BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481404
Length=1905
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25530.1 | Symbols: | AFG1-like ATPase family protein | chr... 2911 0.0
> AT2G25530.1 | Symbols: | AFG1-like ATPase family protein | chr2:10863059-10866757
FORWARD LENGTH=2128
Length=2128
Score = 2911 bits (1576), Expect = 0.0
Identities = 1802/1912 (94%), Gaps = 12/1912 (1%)
Strand=Plus/Plus
Query 1 ATGCCTAATGTTTCTCAGATCTCTACTGTTCTACGTCTAGGGTTTTCTTCTAAAAGAAGA 60
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 205 ATGCCTAATGTTTCTCAGATCTCTACTGTTCTACGTCTAGCGTTTTCTTGTAAAAGAAGA 264
Query 61 CTCTCCAATGGCTTCCACTTCGTTTCTCGTTCTTATTCCACCTCTGATCCTCCC--A-AA 117
|||||||||||||| ||||||||| ||||||| ||||||||||||||||||||| | ||
Sbjct 265 CTCTCCAATGGCTTACACTTCGTTGCTCGTTCCTATTCCACCTCTGATCCTCCCAAACAA 324
Query 118 CCATCAGGTCCACTGACGAGTTACAGTAAGTTAGTGGAGCAAGGGAGGTTACAACATGAT 177
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 325 CCATCAGGTCCACTGACGAATTACTCTAAGTTAGTGGAGCAAGGGAGGTTACAACATGAT 384
Query 178 CCATTCCAAGAGAAAGTTGTTTCAGCATTTGAAAATTTGTTTGGAAGATTGGAACATTTC 237
|||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 385 CCATACCAAGAGAAAGTTGTTTCGGCATTCGAAAATTTGTTTGGAAGATTGGAACATTTC 444
Query 238 GAGAAGGAAATGGAAGATTATCATGTGATATTAGCagagtgggagaagaagagagaggaa 297
|||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 445 GAGAAGCAAATGGAGGATTATCATGTGAGATTAGCAGAGTGGGAGAAGAAGAGAGAGGAG 504
Query 298 gagcggcgaaagctaatggtggaagaagctgagaagaaggaagaagatggaaTGTGGGCA 357
|| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 505 GAACGAAGAAAGCTAATGGTGGAAGAAGCTGAGAAGAAGGAAGATGATGGAATGTGGGCA 564
Query 358 TCTGTGAATAAACATGGG-CAAAAGCTTTTGGGAAGATGGGTATTAGGGCGAAGACAGAT 416
||||||||||| || ||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 565 TCTGTGAATAAGCA-GGGACAAAAGCTTTTGGGAAGATGGGTATTAGGGCGGAGACAGAT 623
Query 417 GAATGTAGAACCTGGAGTTGGTAAATGGGTATCGTATCTTAACCGAGAGAGAAAATTGGA 476
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 624 GAATGTAGAACCTGGAGTTGGTAAATGGGTATCGTACCTTAACCGAGAGAGAAAATTGGA 683
Query 477 CTCGATCGTCGGTTCTCGTCCTGCGGTACCACCAGCTCCCAAAGGGTTATATATCTATGG 536
|||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 684 CTCGATTGTCGGTTCTCGTCCCGCGGTACCACCAGCTCCAAAAGGATTATATATCTATGG 743
Query 537 AAATGTAGGATGTGGCAAGACTATGTTGATGGATATGTTTTATGGCGCCACGGATGGGAT 596
||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 744 AAATGTAGGATGTGGCAAGACTATGTTGATGGATATGTTTTATGGTGCTACTGATGGGAT 803
Query 597 CATTAGACATAGACAACGGTTTCACTTTCATGAGGCTATGCTAAAGATAAATGAACAAAT 656
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 804 CATTAGACATAGACAACGGTTTCACTTTCATGAGGCTATGCTGAAGATAAATGAACAAAT 863
Query 657 GCACAAGTATTGGAAGGAGAATGGTGCCGAAAAGTCACCACAATATAGCATTTCGAGCTG 716
||||||||||||||||||||||||||| || ||| || ||||||||||||||||||||
Sbjct 864 GCACAAGTATTGGAAGGAGAATGGTGCTGAGAAGCCAATGCAATATAGCATTTCGAGCTG 923
Query 717 GATTATGAATCTTCCTGTTGATGAAAAAGTTAAGGAATGGCTAGCTGGAGAAGAATTTTA 776
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 924 GATTATGAATCTTCCTGTTGATGAAAAAGTTAAGGAATGGCTAGCAGGAGAAGAATTTTA 983
Query 777 TAAGCAGCAACTCCAAATGAAACACATTCTTCCAGCTGTGGCTGACAAGTTTCTCGTTGA 836
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 984 TAAGCAGCAACTCCAAATGAAACACATTCTTCCAGCTGTGGCTGATAAGTTTCTCGTTGA 1043
Query 837 TCAGCAATCGAGTAAAAAAGGAGCCAGCATCCTCTGCTTTGATGAGATTCAGACAGTTGA 896
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1044 TCAGCAATCGAGTAAAAAAGGAGCTAGCATCCTCTGCTTTGATGAGATTCAGACAGTTGA 1103
Query 897 TGTATTTGCTATTGTGGCCTTATCTGGAATTATGAGCAGATTGCTGACTACTGGAACTGT 956
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1104 TGTATTTGCTATTGTGGCCTTATCTGGAATTATGAGCAGATTGTTGACTACTGGAACTGT 1163
Query 957 TCTTGTGGCCACCAGTAACCGAGCACCACGGGAGTTGAATCAGGACGGAATGCAGAAGGA 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 TCTTGTGGCCACCAGTAACCGAGCACCACGGGAGTTGAATCAGGACGGAATGCAGAAGGA 1223
Query 1017 GATATTTGACAAGTTTATTTCTAAATTGGAGAAACATTGTGAGATAATCTCAATTGGAAG 1076
||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1224 GATATTTGATAAGTTTATCTCTAAATTGGAGAAACATTGTGAAATAATCTCAATTGGAAG 1283
Query 1077 TGAAGTAGATTACCGCCGAGTTGCAGCCCAAAACTCAGTTGAAAATGTTCACTACTTATG 1136
||||||||||||||||||||||||||| |||| || | |||||||||||||||||||||
Sbjct 1284 TGAAGTAGATTACCGCCGAGTTGCAGCAAAAAATTCGGCTGAAAATGTTCACTACTTATG 1343
Query 1137 GCCTTTAAATAATGCTGTTCTGGAAGAGTTCGAGAAAATGTGGCGTCAGATCACTGACCA 1196
|||||| ||| |||||||||||||||| || |||||||||||||||||| ||||||||||
Sbjct 1344 GCCTTTGAATGATGCTGTTCTGGAAGAATTTGAGAAAATGTGGCGTCAGGTCACTGACCA 1403
Query 1197 GTACGGTGGAGAAACAACCTCTGCGACTCTCCCAGTGATGTTTGGAAGAACAGTGGAGGT 1256
|||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 1404 GTACGGTGGAGAAATAACTTCGGCGACTCTCCCAGTGATGTTTGGAAGAACAGTGGAAGT 1463
Query 1257 TCCTCAAAGCTGTAACGGAGTGGCAAGATTCACATTCGAGTATCTTTGTGGTCGACCCGT 1316
|||| ||||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 1464 TCCTGAAAGCTGTAGTGGAGTGGCAAGGTTCACATTCGAGTATCTATGTGGTCGACCGGT 1523
Query 1317 AGGTGCGGCAGATTATATCGCAGTGGCCAAAAACTATCATACAATCTTTATATCTGATAT 1376
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1524 AGGTGCAGCAGATTATATCGCAGTGGCCAAAAACTATCATACAATTTTTATATCTGATAT 1583
Query 1377 TCCAGCAATGAGCATGGAAATACGTGACAAGGCACGTAGGTTTATAACCCTTGTAGATGA 1436
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1584 TCCAGCAATGAGCATGGAGATACGCGACAAGGCACGTAGGTTTATAACCCTTGTAGATGA 1643
Query 1437 GCTATACAACCACCATTGTTGTCTTGTCTCATGCGCGGAGACACCTATCGATGAGTTGTT 1496
| |||||||||| |||||||||||||||||| ||||||||||| | || |||||||||||
Sbjct 1644 GTTATACAACCATCATTGTTGTCTTGTCTCAAGCGCGGAGACAGCAATTGATGAGTTGTT 1703
Query 1497 TCAAGGAACTGCAGAAGGAACGCTCTTTGACCTTGAAAGCTTCCAGTTTGAGACGGAGAC 1556
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1704 TCAAGGAACTGCAGAGGGAACGCTCTTTGACCTGGAAAGCTTCCAGTTTGAGACAGAGAC 1763
Query 1557 GGAAGATTCAAGATTAAGGCGAGATGTGCTTGCAGAAGGTAGCATAAGTGCAGCTGGATC 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1764 GGAAGATTCAAGATTAAGGCGAGATGTGCTTGCAGAAGGTAGCATAAGTGCAGCTGGCTC 1823
Query 1617 GCCTTCTTCGATCGTATCAATGCTTTCTGGCGAAGAAGAAATGTTTGCTTTTGCTCGAGC 1676
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1824 GCCTTCTTCGATCGTATCAATGCTTTCTGGTGAAGAGGAAATGTTTGCTTTTGCTCGAGC 1883
Query 1677 CGCCTCGCGGTTGATTGAAATGCAGACTCCGTTGTACCTTGAAGGAGTTCGTTTCTTGCA 1736
|| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1884 TGCGTCTCGGTTAATTGAGATGCAGACTCCGTTGTACCTTGAAGGAGTTCGTTTCTTGCA 1943
Query 1737 TCCTTATTTCCATCAGCAAAAGTAATTCAATAATAATAACAGATGAATAATTGACTTATA 1796
|||||| ||||||||||| ||||||| || || | ||||| ||||| | |||||||||
Sbjct 1944 TCCTTACTTCCATCAGCAGAAGTAATGCAC-AA-A-TAACAAATGAACAGTTGACTTATT 2000
Query 1797 TTGCGCCATTAtttttttCCCCTGTGATTATTGTTT-AGCAGAAGTGACCAACCAAG-G- 1853
||| ||||||||||||| | |||||||||||||| ||||||||||||||||||| |
Sbjct 2001 TTGAGCCATTATTTTTT-CTACTGTGATTATTGTTCGAGCAGAAGTGACCAACCAAAAGC 2059
Query 1854 TTTGGTCTTTTGCCTTTATACTAAGGCGATTCATGAATAAAAATGTTATTTT 1905
||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2060 TTTGGTCTTTTGCCTTTATACTAAGGCCATTCATGAATAAAAATGTTATTTT 2111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94326824055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5