BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481406
Length=2425
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25560.1 | Symbols: | DNAJ heat shock N-terminal domain-con... 3406 0.0
> AT2G25560.1 | Symbols: | DNAJ heat shock N-terminal domain-containing
protein | chr2:10880671-10883868 FORWARD LENGTH=2512
Length=2512
Score = 3406 bits (1844), Expect = 0.0
Identities = 2262/2452 (92%), Gaps = 75/2452 (3%)
Strand=Plus/Plus
Query 1 AACTAAGCAGTCaaaaaaaaaaaaTCAAGGGAACGAGTTGTGAAATTAGAGaaaaaaaaa 60
|||||||||||||||||||||||| || |||||||||||||||||||| || ||||
Sbjct 1 AACTAAGCAGTCAAAAAAAAAAAA-AAAAAAAACGAGTTGTGAAATTAGAG--AAGAAAA 57
Query 61 CAAAACTCAGAGCAGTGACAAACATCGATTCAAGAATTGTGAAGCGCCGCCGATTTTCGT 120
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 58 -AAAACTCAGAGCAGTGACAAACATCGATTCAAGAGTTGTGAAGCGCCGCCGATTTTCGT 116
Query 121 AGAAGATAATCTAATTCCAAAATTCTC--TTTTGGGATCGCTTTGCTACTTCTGATTCCA 178
|||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 117 AGAAGATAATCTGATTCCAAATTTCTCTTTTTTGGGATCGCTTCGCTACTTCTGATTCCA 176
Query 179 TTTTTCCTCGGCAAAAAATCTGGAATCTGTATCGTCACTA-CCAAAAATTCTCTTCCTTT 237
||| ||||||| |||||||||||||||||| |||||| | || ||||||||||||| ||
Sbjct 177 TTTCACCTCGGC-AAAAATCTGGAATCTGTACCGTCAC-AGCCGAAAATTCTCTTCC-TT 233
Query 238 C-CCGTTTCGTTTCGCTTCTTATTTTGCGGATTTGTCGTTGGTGCTTAATTCCCGTAGAA 296
| ||||||||||||||| |||||| ||||||||||||||||||||| ||||||| |||||
Sbjct 234 CACCGTTTCGTTTCGCTGCTTATTGTGCGGATTTGTCGTTGGTGCTCAATTCCCCTAGAA 293
Query 297 TCTGTATCCAATCCATCTCTCGTG---C----A-A-CA------TTATTGAGAAGTCGAT 341
|| ||||||| ||||||||||||| | | | || ||||||||||||||||
Sbjct 294 TCGGTATCCAGTCCATCTCTCGTGCAACTTTTATATCAGTCTCTTTATTGAGAAGTCGAT 353
Query 342 TCAGTTTTCCCGAGCTGGTATTAGAGTCTGGTCCCTGCTCCTCCATTCGTGGCATTTTGT 401
|| |||| ||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 354 TCGGTTTCCCCGAGC---------AGTCAGGTCCCTGCTCCTCCATTCGTGGCATTTTGT 404
Query 402 AGAGGAGGGTATAAATTAGGAGACTTCAAATGGAATGTAATAAAGAAGACGCTATAAGGG 461
||||||| |||| ||||||||||||| |||||| | |||||||||||| |||| |||||
Sbjct 405 AGAGGAGAATATACATTAGGAGACTTCCAATGGAGTTTAATAAAGAAGAAGCTACAAGGG 464
Query 462 CTAGAGAGATTGCAAAGAGGAAGTTTTTAGCAAATGATTTTGCGGGGGCCAGGAAATTTG 521
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 465 CTAGAGAGATTGCAAAGAGGAAGTTTTTAGCAAATGATTTTGCGGGGGCGAGGAAATTTG 524
Query 522 CCTTGAAGGCTCAGTTCCTGTATCCTGAACTCGATGGAATTGCCCAAATGGTGGCCACAT 581
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
Sbjct 525 CCTTGAAGGCTCAGTTTCTGTATCCTGAACTCGATGGAATTGCTCAAATGGTGGCCACTT 584
Query 582 TTGATGTTCATTTATCTGCTCAGAATATAATATATGGGGA-GATAGACTTCTATGGTGTA 640
||||||||||||||||||| |||||||| || |||||||| | ||||| ||||||||||
Sbjct 585 TTGATGTTCATTTATCTGCACAGAATATCATTTATGGGGATG-TAGACCACTATGGTGTA 643
Query 641 CTTGGTCTGAACCCTGAGGCTGATCACGAAACT-GTGAGGAAGCGTTACAGAAAGTTGGC 699
|||||||||||||||||||||||| |||||| | ||||||||||||||||||||||| ||
Sbjct 644 CTTGGTCTGAACCCTGAGGCTGATGACGAAA-TAGTGAGGAAGCGTTACAGAAAGTTAGC 702
Query 700 TGTAATGCTTCATCCTGACAGGAACAAGTCTA-TCGGAGCAGAGGAAGCCTTTAAGTTTC 758
||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||
Sbjct 703 TGTAATGCTTCATCCAGACAGGAACAAGTC-AGTCGGAGCAGAGGAAGCCTTTAAGTTTC 761
Query 759 TTTCGCAGGCATGGGGTGTGTTCTCTGACAAGGCAAAGAGAGCTGACTATGACCTGAAGA 818
|||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 762 TTTCACAGGCTTGGGGTGTCTTCTCTGACAAGGCAAAGAGAGCTGACTATGACCTGAAGA 821
Query 819 GGAATGTGGGATTGTATAAGGGAGGAGGGGCATCATCATCAAGGCCTGCAACCAATGGAT 878
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
Sbjct 822 GGAATGTGGGATTGTATAAGGGAGGAGGAGCATCATCGTCAAGGCCTGCAACCAATGGGT 881
Query 879 TTCAGAAAGTTACTAAAGCTAGCGCTAACACAACCAAAGTAAAGAGTTCAAAGAGAGGTA 938
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 882 TTCAGAAAGTTACTAAAGCTAGCGGTAACACAACCAAAGTAAAGAGTTCAAAGAGAGGTA 941
Query 939 TAAAACGGGCAAGTGACGCCTCTGCTGCCGCTACT-C--CTACTTCGGCCCAGAAAACAA 995
|||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||||
Sbjct 942 TAAAACGGGCAAGTGATGCCTCTGCTGCCGCTACTACTTCTACCTCGGCCCAGAAAACAA 1001
Query 996 CTGCTGATGGGACCTTTTGGACTGTATGCCGTACTTGCAGAACACAATATGAATATCATC 1055
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1002 CTGCTGATGGGACCTTTTGGACTGTATGCCGTACTTGCAGAACACAGTATGAATATCATA 1061
Query 1056 GTGTTTATCTAAATCAAAACCTCTTGTGTCCCAACTGTCGTAAGCCATTTATAGCGGTGG 1115
|||||||||||||||| |||||| |||||||||||||||||||||| |||||||| ||||
Sbjct 1062 GTGTTTATCTAAATCAGAACCTCCTGTGTCCCAACTGTCGTAAGCCGTTTATAGCTGTGG 1121
Query 1116 AAACAGATCCTCCAGGTTCAGGTTCGATTCGCAAGACCTTTCACGAGCACCAATTCGACT 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 AAACAGATCCTCCAGGTTCAGGTTCGATTCGCAAGACCTTTCACGAGCACCAATTCGACT 1181
Query 1176 CTCTCCGCCATACAACGGACGGAAGAAAGAAAAATGTATCTGGAAGAGACAACAATGGGG 1235
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1182 CTCTCCGCCATACAACAGACGGAAGAAAGAAAAATGTACCTGGAAGAGACAACAATGGGG 1241
Query 1236 TGTATGGTGAATGTGATTCCTTTGAGTGGGG-GATGTTCACTGGAACCAAAAATTCTGCT 1294
|||||||||||| |||||||||||||||||| | ||||||||||||| |||| |||||||
Sbjct 1242 TGTATGGTGAATATGATTCCTTTGAGTGGGGTG-TGTTCACTGGAACTAAAACTTCTGCT 1300
Query 1295 CATGCTACACAGACTGGGTCACGAAAAGATGAGGTTGTGCGTAGAGAGTATACCAAGAGG 1354
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1301 CATGCTACACCGACCGGGTCACGAAAAGATGAGGTTGTGCGTAGAGAGTATACCAAAAGG 1360
Query 1355 GTGGCTGGTGTTTCATCAACAATTCCTCCAAAAAGAAGAAAGGTTACGGAAAATGCAGTT 1414
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1361 ACGGCTGGTCCTTCATCAACAATTCCTCCAAAAAGAAGAAAGGTTATGGAAAATGCAGTT 1420
Query 1415 GCTGGTGCCAACATTGCAAGTTGTTTTGCTCCCAAGTCCACCGGTGCAAAAGAAATTTCT 1474
|| |||| |||||||||||||||| |||||||||||||||| |||| ||||||| |||||
Sbjct 1421 GCGGGTGGCAACATTGCAAGTTGTCTTGCTCCCAAGTCCACTGGTGTAAAAGAAGTTTCT 1480
Query 1475 GAGGATGAGCTGAAGAATTTATTGAAGAAGAAAGCTAAATCAGTAATCAGCAGAAACCTG 1534
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 GAGGACGAGCTGAAGAATTTATTGAAGAAGAAAGCTAAATCAGTAATCAGCAGAAACCTG 1540
Query 1535 CCAG-GATTATGCACCATCGTTGCTGAAACTGAAACTGACGCAAACGAAAGGGGAATGGA 1593
|||| | |||||||||||||||||||||||||||||| ||| ||| ||||||||||
Sbjct 1541 CCAGAG-TTATGCACCATCGTTGCTGAAACTGAAACTAACG-----GAA-GGGGAATGGA 1593
Query 1594 AACTGAGGATCTCAATGGTTTCATTGCAGGTTCTTCAGTAAACAAAAATGCCATTGAATC 1653
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1594 AACTGAGGATCTCAATGGTTTCAATGCAGGTTCTTCAGTAAACAAAAATGCCATTGAATC 1653
Query 1654 CTGCTGCATGGACTCCATTGAGGATACTTCTGCTACTGACAAGGATTTGAATTCCCTGGG 1713
||||||||| | || | || | || | | ||| |||||||| |||||
Sbjct 1654 ATGCTGCATG-A----AT--A-----CT---G--AC--A-A-GGAATTGAATTCACTGGG 1692
Query 1714 AGCCTTGACATTAGATGTTACTGCTCCAGATTTTTGTGACTTTGACAAGGATCGAACTGA 1773
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1693 AGCCTTGACATTAGATGTTACTGCGCCGGATTTTTGTGACTTTGACAAGGATCGAACTGA 1752
Query 1774 AAAGTCAATTAGGGATGACCAGGTATGGGCTTTTTACGATTCTCTTGAAGGGATGCCTCG 1833
||||||| ||| |||| ||||| ||||||||||||||||||||| |||||| |||||||
Sbjct 1753 AAAGTCAGTTAAGGATAACCAGATATGGGCTTTTTACGATTCTCATGAAGGTCTGCCTCG 1812
Query 1834 ATCATATGCCTTGATACATAATGTTATCTCCGTAGATCCATTCAAGGTGCGAATGAGTTG 1893
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1813 ATCATATGCCTTGATACATAATGTTATCTCCGTAGATCCATTCAAGGTGCGTATGAGTTG 1872
Query 1894 GCTTACTCCAGTAACAAACAGTGAGCTTAGCTCAACAAATTGGCTTGGTTTTGGTATACC 1953
||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||
Sbjct 1873 GCTTACTCCAGTAACAAACGGTGAGCCTAGCTCAACGAATTGGCTTGGTTTTGGTATACC 1932
Query 1954 TAAAAGTTGTGGAGGTTTTAGAGTTAGGAAAACCCAAATATGCAGGTCACCTTACAGTTT 2013
||||||||||||||||| |||||||||||||| | ||| | ||||||||||||||||||
Sbjct 1933 AAAAAGTTGTGGAGGTTTCAGAGTTAGGAAAACACTAATCTACAGGTCACCTTACAGTTT 1992
Query 2014 CTCACACAAAGTAAACCTGGTCAAAGGCAGTCATGGGGAATTTCTTATATATCCTAGAAG 2073
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1993 CTCACACAAAGTAAACCTGGTCAAAGGCAATCATGGGGAATTCCTTATATATCCTAGAAC 2052
Query 2074 AGGCGATGTATGGGCTCTGTATCGGAAATGGTCCCCTGACTGGAACTATCTTACAGGAGT 2133
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2053 AGGCGATGTCTGGGCTCTGTATCGGAAATGGTCCCCTGACTGGAACTATCTTACAGGAGT 2112
Query 2134 CGAAACAATTGAGTACGATATAGTTGAAGTAGTTGAAGGATATACAGAGGAATATGGTGT 2193
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2113 CGAAACAGTTGAGTACGATATAGTTGAAGTAGTTGAAGGATACACAGAGGAATATGGTGT 2172
Query 2194 GTTAGTGGTTCCTCTGGTTAAAGTTGCTGGTTTCAAAGCCGTGTTTCACCATCATTTGGA 2253
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2173 GGTAGTGGTTCCTCTGGTTAAAGTTGCTGGTTTCAAAGCCGTGTTTCACCATCATTTGGA 2232
Query 2254 TCCCAAAGAAACTAGAAGGATCCTTAGGGATGAAATTTCAAGATTCTCTCACAAGATACC 2313
| |||||||||| | |||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 2233 TTCCAAAGAAACCAAAAGGTTCCTTAGGGATGAAATTTCGAGATTCTCTCACAAGATACC 2292
Query 2314 GTCTTACTTGCTCACAGGTCAAGAAGCACCCGGTGCACCCAGAGGTTGCAGACAGCTTGA 2373
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2293 GTCTTACTTGCTGACAGGTCAAGAAGCACCCGGTGCACCCAGAGGTTGCAGACAGCTTGA 2352
Query 2374 CCCGGCAGCAACACCGTCTCAGCTTCTTCAGGCTATCGATGATTATCGGTAA 2425
|||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2353 CCCGGCAGCAACACCGTCACAGCTTCTTCAGGCTATCGATGATTATCGGTAA 2404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120431107455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5