BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481407 Length=959 Score E Sequences producing significant alignments: (Bits) Value AT2G25570.1 | Symbols: | binding | chr2:10885698-10887921 REVE... 1513 0.0 > AT2G25570.1 | Symbols: | binding | chr2:10885698-10887921 REVERSE LENGTH=1129 Length=1129 Score = 1513 bits (819), Expect = 0.0 Identities = 916/963 (95%), Gaps = 5/963 (1%) Strand=Plus/Plus Query 1 AAAATTCTCTCCGGTTAGGTTTCTTCTCCGGCTAAATCATGTTTCGTCGTCTGATTCTCC 60 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 42 AAAATTCTCTCCGGTTAGGTTTCTTCTCCGGCTAAATCATGTTTCGTCGTTTAATTCTCC 101 Query 61 GGCAAGCAGCCGCCGTTGCCGCGGAATCGAAGATTGCTAGTGACCAT-C--TTCATGGAT 117 |||||||||||||||| ||||||||||||||||||||| || | ||| | ||||||||| Sbjct 102 GGCAAGCAGCCGCCGTCGCCGCGGAATCGAAGATTGCTTGTCATCATACTGTTCATGGAT 161 Query 118 TCGATCAGCGAAGAGGATTACACAGTAGGAACAAGAAAGCAATGGAGTATGTAGCCAAAG 177 |||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 162 TCGAACAGCGAAGAGGATTACACAGTAGGAATGAGAAGGCAATGGAGTATGTAGCCAAAG 221 Query 178 GATGGAGCGCGATTAAGGAAGTAGACAGAGTTATCGATTACTGTGAACTCAATGATCGTC 237 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 222 GATGGAGCGCGATTAAAGAAGTAGAGAGAGTTATCGATTACTGTGAACTCAATGATCGTC 281 Query 238 GTCTAATTCCTCTCCTCAGGGGAGCTAAAGAGAACTTTGAACTTGCTCTGGAAGCTGATA 297 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 282 GTCTTATTCCTCTCCTCAGGGGAGCTAAAGAGAACTTTGAACTTGCTCTGGAAGCTGATA 341 Query 298 ATTTGAACACTCATGCTAGATATTGGCTTTCCAAGTTGCACTTGAAGTATCATGTTCCTG 357 ||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||| Sbjct 342 ATTTGAACACTCATGCTAGGTATTGGCTTTCCAAGTTGCACCTGAAGTACCATGTTCCTG 401 Query 358 GAGCGTGTAAAGCTGTTGGAGCTGCTTTGCTTGTCGAAGCTGCAGACATGGGTAATGCAG 417 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 402 GAGCTTGTAAAGCTGTGGGAGCTGCTTTGCTTGTCGAAGCTGCAGACATGGGTAATGCAG 461 Query 418 ATGCTCAATATGAGTTAGGGTGTCGTTTAAGAGTCGAGAATGATCATGTCCAATCGGATC 477 |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 462 ATGCTCAATATGAGCTAGGGTGTCGTTTAAGAGTCGAGAATGATCATGTCCAGTCGGATC 521 Query 478 AACAGGCGTTTCACTATATAGAGAATGCTGTTGATCAGCTGCATCCAGGTGCCCTCTATC 537 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 522 AACAGGCGTTTCACTATATAGAGAATGCTGTTGATCAGCTACATCCAGGTGCCCTCTATC 581 Query 538 TTTTAGGAATAGTGTATCTGACGGGAGACTGTGTGAAGCAAGATGTGGATTCAGCTATAT 597 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 582 TTTTAGGAATAGTGTATCTGACAGGAGACTGTGTGAAGCAAGATGTGGATTCAGCTATAT 641 Query 598 GGTGTTTCCATAGGGCTTCAGAGAAGGGACATGCCGGTGCTGCTATAGCGTATGGATCTC 657 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 642 GGTGTTTCCATAGGGCTTCAGAGAAGGGACATGCTGGTGCTGCTATAGCATATGGATCTC 701 Query 658 TTTTACTTAGAGGCGTGCAAGTCCCAGAATCTCTTACAAAATTGAACGCCGTGGGAGTTT 717 ||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 702 TTTTACTTAGAGGTGTGCAAGTCCCAGAATCTCTAACAAAATTGAACGTCGTGGGAGTTT 761 Query 718 CACCGCCCAAGAGATCAAAAAAGAACCTGGAAAATCTGGAGATGAATCCATTAGAGATGG 777 |||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 762 CACCTCCCAAGAGAGCAAGAAAGAACCTGGAAAATCCGGAGATGAATCCATTAGAGATGG 821 Query 778 CAAAAGAACAGTTCCAAATGGCTGCAAGAGCAGGGTGCGATCTGGGGCTGCAATGGCTGC 837 ||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||| Sbjct 822 CAAAAGAACAGTTCCAAATCGCTGCAAGAGCAGGGTGCGATCTAGGGCTGAAATGGCTGC 881 Query 838 AAAGGGTGGAGCAGGAAGAGAAACTTCTTATGAGTGAACAAGATAACGAATGTGCCTATG 897 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 882 AAAGGGTGGAGCAAGAAGAGAAACTTCTTATGAGGGAACAAGATAACGAATGTGCCTATG 941 Query 898 TATGATGCA-CTGCATATGTAATACTTAAGTGTCTCGTGACGCGAATCATCAAGCAGCTT 956 ||||||||| |||| ||||||||||| | || |||| ||| |||| |||||||||||||| Sbjct 942 TATGATGCATCTGCGTATGTAATACTCATGTCTCTCATGAAGCGA-TCATCAAGCAGCTT 1000 Query 957 AAG 959 ||| Sbjct 1001 AAG 1003 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46918693298 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5