BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481407
Length=959
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25570.1 | Symbols: | binding | chr2:10885698-10887921 REVE... 1513 0.0
> AT2G25570.1 | Symbols: | binding | chr2:10885698-10887921 REVERSE
LENGTH=1129
Length=1129
Score = 1513 bits (819), Expect = 0.0
Identities = 916/963 (95%), Gaps = 5/963 (1%)
Strand=Plus/Plus
Query 1 AAAATTCTCTCCGGTTAGGTTTCTTCTCCGGCTAAATCATGTTTCGTCGTCTGATTCTCC 60
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 42 AAAATTCTCTCCGGTTAGGTTTCTTCTCCGGCTAAATCATGTTTCGTCGTTTAATTCTCC 101
Query 61 GGCAAGCAGCCGCCGTTGCCGCGGAATCGAAGATTGCTAGTGACCAT-C--TTCATGGAT 117
|||||||||||||||| ||||||||||||||||||||| || | ||| | |||||||||
Sbjct 102 GGCAAGCAGCCGCCGTCGCCGCGGAATCGAAGATTGCTTGTCATCATACTGTTCATGGAT 161
Query 118 TCGATCAGCGAAGAGGATTACACAGTAGGAACAAGAAAGCAATGGAGTATGTAGCCAAAG 177
|||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 162 TCGAACAGCGAAGAGGATTACACAGTAGGAATGAGAAGGCAATGGAGTATGTAGCCAAAG 221
Query 178 GATGGAGCGCGATTAAGGAAGTAGACAGAGTTATCGATTACTGTGAACTCAATGATCGTC 237
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 222 GATGGAGCGCGATTAAAGAAGTAGAGAGAGTTATCGATTACTGTGAACTCAATGATCGTC 281
Query 238 GTCTAATTCCTCTCCTCAGGGGAGCTAAAGAGAACTTTGAACTTGCTCTGGAAGCTGATA 297
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 GTCTTATTCCTCTCCTCAGGGGAGCTAAAGAGAACTTTGAACTTGCTCTGGAAGCTGATA 341
Query 298 ATTTGAACACTCATGCTAGATATTGGCTTTCCAAGTTGCACTTGAAGTATCATGTTCCTG 357
||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||
Sbjct 342 ATTTGAACACTCATGCTAGGTATTGGCTTTCCAAGTTGCACCTGAAGTACCATGTTCCTG 401
Query 358 GAGCGTGTAAAGCTGTTGGAGCTGCTTTGCTTGTCGAAGCTGCAGACATGGGTAATGCAG 417
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 GAGCTTGTAAAGCTGTGGGAGCTGCTTTGCTTGTCGAAGCTGCAGACATGGGTAATGCAG 461
Query 418 ATGCTCAATATGAGTTAGGGTGTCGTTTAAGAGTCGAGAATGATCATGTCCAATCGGATC 477
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 462 ATGCTCAATATGAGCTAGGGTGTCGTTTAAGAGTCGAGAATGATCATGTCCAGTCGGATC 521
Query 478 AACAGGCGTTTCACTATATAGAGAATGCTGTTGATCAGCTGCATCCAGGTGCCCTCTATC 537
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 522 AACAGGCGTTTCACTATATAGAGAATGCTGTTGATCAGCTACATCCAGGTGCCCTCTATC 581
Query 538 TTTTAGGAATAGTGTATCTGACGGGAGACTGTGTGAAGCAAGATGTGGATTCAGCTATAT 597
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 582 TTTTAGGAATAGTGTATCTGACAGGAGACTGTGTGAAGCAAGATGTGGATTCAGCTATAT 641
Query 598 GGTGTTTCCATAGGGCTTCAGAGAAGGGACATGCCGGTGCTGCTATAGCGTATGGATCTC 657
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 642 GGTGTTTCCATAGGGCTTCAGAGAAGGGACATGCTGGTGCTGCTATAGCATATGGATCTC 701
Query 658 TTTTACTTAGAGGCGTGCAAGTCCCAGAATCTCTTACAAAATTGAACGCCGTGGGAGTTT 717
||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 702 TTTTACTTAGAGGTGTGCAAGTCCCAGAATCTCTAACAAAATTGAACGTCGTGGGAGTTT 761
Query 718 CACCGCCCAAGAGATCAAAAAAGAACCTGGAAAATCTGGAGATGAATCCATTAGAGATGG 777
|||| ||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 762 CACCTCCCAAGAGAGCAAGAAAGAACCTGGAAAATCCGGAGATGAATCCATTAGAGATGG 821
Query 778 CAAAAGAACAGTTCCAAATGGCTGCAAGAGCAGGGTGCGATCTGGGGCTGCAATGGCTGC 837
||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||
Sbjct 822 CAAAAGAACAGTTCCAAATCGCTGCAAGAGCAGGGTGCGATCTAGGGCTGAAATGGCTGC 881
Query 838 AAAGGGTGGAGCAGGAAGAGAAACTTCTTATGAGTGAACAAGATAACGAATGTGCCTATG 897
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 882 AAAGGGTGGAGCAAGAAGAGAAACTTCTTATGAGGGAACAAGATAACGAATGTGCCTATG 941
Query 898 TATGATGCA-CTGCATATGTAATACTTAAGTGTCTCGTGACGCGAATCATCAAGCAGCTT 956
||||||||| |||| ||||||||||| | || |||| ||| |||| ||||||||||||||
Sbjct 942 TATGATGCATCTGCGTATGTAATACTCATGTCTCTCATGAAGCGA-TCATCAAGCAGCTT 1000
Query 957 AAG 959
|||
Sbjct 1001 AAG 1003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46918693298
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5