BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481412
Length=814
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25610.1 | Symbols: | ATPase, F0/V0 complex, subunit C prot... 1112 0.0
AT4G32530.2 | Symbols: | ATPase, F0/V0 complex, subunit C prot... 211 8e-54
> AT2G25610.1 | Symbols: | ATPase, F0/V0 complex, subunit C protein
| chr2:10901291-10902531 REVERSE LENGTH=868
Length=868
Score = 1112 bits (602), Expect = 0.0
Identities = 757/825 (92%), Gaps = 37/825 (4%)
Strand=Plus/Plus
Query 1 ATTCAAATCGAAGAGATAGAGAGAGAAAATGTCCGGTGTTGTGGCTATTCATGCGAGTTC 60
||||| ||| ||||||| ||||||||||||||| | | |||||||||||||||||||||
Sbjct 12 ATTCATATCAAAGAGAT--AGAGAGAAAATGTCC-G-G-TGTGGCTATTCATGCGAGTTC 66
Query 61 ATGGGGCGCGGCTCTGGTGAGAATCTCTCCGTACACTTTCTCCGCCATCGGAATCGCCAT 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 67 ATGGGGCGCGGCTCTGGTGAGAATCTCCCCGTACACTTTCTCCGCCATCGGAATCGCCAT 126
Query 121 CTCCATCGGCGTCTCCGTTCTTGGTGCCGCCTGGGGAATTTACATTACCGGAAGTAGTTT 180
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 127 CTCCATCGGCGTCTCTGTTCTTGGTGCTGCCTGGGGAATTTACATTACCGGAAGTAGTTT 186
Query 181 GATCGGTGCCGCCATTGAAGCTCCTCGTATCACTTCCAAGAATCTCATCAGTGTAATCTT 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 187 GATCGGTGCCGCCATTGAAGCTCCTCGAATCACTTCCAAGAATCTCATCAGTGTAATCTT 246
Query 241 TTGTGAAGCGGTGGCTATATACGGTGTTATTGTTGCAATCATATTACAAACGAAGTTGGA 300
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 247 CTGTGAAGCCGTGGCTATATACGGTGTTATTGTGGCAATCATATTACAAACGAAGTTGGA 306
Query 301 GAGTGTACCATCATCGAAGATGTATGATGCTGAGTCTCTAAGAGCTGGATATGCAATCTT 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 GAGTGTACCATCATCAAAGATGTATGATGCTGAGTCTCTAAGAGCTGGATATGCAATCTT 366
Query 361 TGCTTCTGGAATCATTGTTGGATTCGCAAACCTTGTATGCGGATTATGTGTAGGAATCAT 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 367 TGCTTCTGGAATCATTGTTGGATTCGCAAACCTTGTATGCGGGTTATGTGTAGGAATCAT 426
Query 421 TGGAAGCAGTTGTGCGTTGTCTGATGCTCAGAACTCGACGCTCTTTGTTAAGATTCTTGT 480
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 TGGAAGCAGTTGCGCATTGTCTGATGCTCAGAACTCGACGCTCTTTGTTAAGATTCTTGT 486
Query 481 GATTGAGATCTTTGGTAGTGCTCTCGGGTTGTTTGGAGTTATCGTTGGGATCATTATGTC 540
||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 487 GATTGAGATCTTTGGGAGTGCTCTCGGGTTATTTGGAGTTATCGTTGGGATTATTATGTC 546
Query 541 GGCTCAAGCTACATGGCCTACAAAATAGAGATATATAAACTGGTA--T-A----CT---- 589
|||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 547 AGCTCAAGCTACATGGCCTACAAAATAGAGATATATAAACTGGTAACTTATGGACTTGTA 606
Query 590 CT--ATAC-CT-T---TT--ATGATCTATTTTTCAAAATCCCGGA-AGAATTTTTATCTT 639
|| ||| || | || ||||||||||||||||| | ||||| | || || | |||
Sbjct 607 CTCTATAGTCTATACATTCTATGATCTATTTTTCAAAGTTCCGGATAAAAATTACA-CTT 665
Query 640 CTTTGCTGCTATATCTC--GTGTAGAAGACAAAACCATGTGTGATTAAGATTCTC-T-G- 694
|||||||| |||||||| |||||||||| ||||||||||||||||||||||||| | |
Sbjct 666 CTTTGCTGTTATATCTCTTGTGTAGAAGA-AAAACCATGTGTGATTAAGATTCTCCTTGA 724
Query 695 -T-GAATCCTTATTTTTTGGTAATGTTCAAACTTGGGAATAAGTCACTTGGAGAAACCTC 752
| |||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 725 GTTGAATCCCTATTTTTTGGTAATGTTCAAATTTGGTAATAAGTCACTTGGAGAAACCTC 784
Query 753 TTCATGTTTGTATTCTTTGGTTCT-TTTGTGACAAATCATAAGAG 796
|||||| ||||| ||||||||||| ||| |||||||| |||||||
Sbjct 785 TTCATGCTTGTACTCTTTGGTTCTCTTT-TGACAAATGATAAGAG 828
> AT4G32530.2 | Symbols: | ATPase, F0/V0 complex, subunit C protein
| chr4:15693114-15695100 REVERSE LENGTH=1060
Length=1060
Score = 211 bits (114), Expect = 8e-54
Identities = 155/175 (89%), Gaps = 2/175 (1%)
Strand=Plus/Plus
Query 404 TTATGTGTAGGAATCATTGGAAGCAGTTGTGCGTTGTCTGATGCTCAGAACTCGACGCTC 463
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||
Sbjct 611 TTATGTGTAGGAATCATTGGAAGCAGTTGTGCATTGTCCGATGCTCAGAACTCCACACTT 670
Query 464 TTTGTTAAGATTCTTGTGATTGAGATCTTTGGTAGTGCTCTCGGGTTGTTTGGAGTTATC 523
||||| |||||||||||||| ||||| || || ||||||||||||||||||||||||||
Sbjct 671 TTTGTAAAGATTCTTGTGATCGAGATATTCGGGAGTGCTCTCGGGTTGTTTGGAGTTATT 730
Query 524 GTTGGGA-TCATTATGTCGGCTCAAGCTACATGGCCTACAAAATAGAGATATATA 577
|| |||| | |||||||| || ||||| |||||||| || ||||||| |||||||
Sbjct 731 GT-GGGAATTATTATGTCTGCACAAGCGACATGGCCAACGAAATAGATATATATA 784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39634741983
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5