BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481413
Length=1546
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25620.1 | Symbols: AtDBP1, DBP1 | DNA-binding protein phosp... 2438 0.0
> AT2G25620.1 | Symbols: AtDBP1, DBP1 | DNA-binding protein phosphatase
1 | chr2:10902943-10905245 REVERSE LENGTH=1657
Length=1657
Score = 2438 bits (1320), Expect = 0.0
Identities = 1461/1529 (96%), Gaps = 9/1529 (1%)
Strand=Plus/Plus
Query 25 AATCCATTGTTTACGAATCTCTCATCTAAAGCTACATTCTCCGATAAATC-CTTTTAATC 83
|||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||
Sbjct 131 AATCCATTGTTTACGAATCTCTCATCTAAAGCTACATTCTTCGTTAAATCGTTTTTAATC 190
Query 84 GACTCACTGACTCGTGAGTTGACTCGTAAGCTGTTTCTC-TAATTGCTTATAGAATTTTT 142
||||| || |||||||||||||||||| ||||||||| | ||||||||||| ||||||||
Sbjct 191 GACTCGCTCACTCGTGAGTTGACTCGTCAGCTGTTTC-CATAATTGCTTATTGAATTTTT 249
Query 143 ATGCGATGATGTTTCAATATGGAAGAAACTAGAAGAATTTCTGATCCAGAGAATGGGAGT 202
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 250 ATACGATGATGTTTCAATATGGAAGAAACTAGAGGAATTTCTGATCCAGAGAATGGGAGT 309
Query 203 TCGAGTTACGGCGGTAAACCGCCGAATCCACTCTCTTTCTCTTCTTCCTCAG-C-C-GCT 259
||||||||||||||||||||||||||||||||||| |||||||||||||| | | | |||
Sbjct 310 TCGAGTTACGGCGGTAAACCGCCGAATCCACTCTCCTTCTCTTCTTCCTCCGCCGCTGCT 369
Query 260 GCCGTATACAAGCAAAGCTTCGACGGCGAGCGATCGTTGGCTCCGTGTAATAAGAGGTCA 319
||||| |||| ||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 370 GCCGTTTACAGGCAAACCTTCGACGGCGAGCGATCGTTGGCGCCGTGTAATAAGAGGTCA 429
Query 320 CTTGTTCGACACTCATCTCTCGTGAAGACAAAGGTGTCAGATATATCTGTTGAGAATGAG 379
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 430 CTGGTTCGACACTCATCTCTCGTGAAGACAATGGTGTCAGATATATCTGTTGAGAATGAG 489
Query 380 TTTACTTTAGAGAAGAACAAGTCTGAGTTTGTTCCTGCTATGCGTTCTGGAGCTTGGTCT 439
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 490 TTTACTATAGAGAAGAACAAGTCTGAGTTTGTTCCTGCTACGCGTTCTGGAGCTTGGTCT 549
Query 440 GATATTGGATCCAGGGCAAGCATGGAAGATGCTTATCTATGCGTTGATAATTTCATGGAT 499
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 GATATTGGCTCCAGGTCAAGCATGGAAGATGCTTATCTATGCGTTGATAATTTCATGGAT 609
Query 500 AGCTTTGGACTTCTGAATTCTGAGGCCGGTCCAAGTGCCTTTTACGGGGTATTTGATGGA 559
|||||||| ||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 610 AGCTTTGGCCTTCTGAATTCTGAGGCTGGTCCAAGTGCCTTCTATGGGGTATTTGATGGA 669
Query 560 CATGGTGGGAAGCATGCTGCTGATTTTGCATGTCACCATATACCGAGGTACATTGTTGAA 619
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 670 CATGGTGGGAAGCATGCCGCTGAGTTTGCATGTCACCATATACCGAGGTACATTGTTGAA 729
Query 620 GATCAAGAGTTTCCTAGTGAAATCAATAAGGTGTTGTCTTCAGCATTTCTTCAAACAGAC 679
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 730 GATCAAGAGTTTCCTAGTGAAATCAATAAGGTGTTATCTTCAGCATTTCTTCAAACAGAC 789
Query 680 ACTGCCTTCTTAGAGGCGTGTTCATTGGATGGGAGCCTTGCTTCAGGAACTACTGCTTTG 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 ACTGCCTTCTTAGAGGCGTGTTCATTGGATGGGAGCCTTGCTTCAGGAACTACTGCTTTG 849
Query 740 GCAGCTATTCTTTTTGGGAGGTCGTTGGTGGTAGCAAACGCTGGAGATTGTAGAGCAGTC 799
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 850 GCAGCTATTCTTTTTGGAAGGTCGTTGGTGGTAGCAAACGCTGGAGATTGCAGAGCAGTC 909
Query 800 TTATCCCGTCAGGGAAAAGCCATTGAAATGTCAAGAGACCACAAACCCATGAGCAGTAAG 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 TTATCCCGTCAGGGAAAAGCCATTGAAATGTCAAGAGACCACAAACCCATGAGCAGTAAG 969
Query 860 GAGAGAAGACGCATTGAGGCATCGGGTGGATATGTATTTGATGGCTATCTAAATGGACAA 919
|| || ||||||||||| |||||||||||| ||||||| |||||||||||||||||||||
Sbjct 970 GAAAGGAGACGCATTGAAGCATCGGGTGGACATGTATTCGATGGCTATCTAAATGGACAA 1029
Query 920 CTTAATGTGGCTCGTGCGCTCGGTGACTTTCATATGGAAGGCATGAAGAAGAAGAAAGAT 979
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1030 CTTAATGTGGCTCGAGCGCTAGGTGACTTTCATATGGAAGGCATGAAGAAGAAGAAAGAT 1089
Query 980 GGTTCTGATTGTGGACCTCTCATTGCAGAGCCTGAGCTCATGACAACTAAACTAACAGAA 1039
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1090 GGTTCTGATTGTGGACCTCTAATTGCAGAGCCTGAGCTCATGACAACAAAACTAACAGAA 1149
Query 1040 GAGGACGAGTTCCTCATAATCGGGTGTGATGGGGTTTGGGATGTGTTCATGAGCCAGAAT 1099
||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1150 GAGGATGAGTTCCTTATAATTGGGTGTGACGGGGTTTGGGATGTGTTCATGAGCCAGAAT 1209
Query 1100 GCTGTAGATTTTGCCAGAAGGAGACTACAAGAGCACAATGACCCGGTCATGTGTAGTAAA 1159
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1210 GCTGTAGATTTTGCCAGAAGGAGACTACAGGAGCACAATGACCCGGTCATGTGTAGTAAG 1269
Query 1160 GAGCTGGTTGAGGAAGCTTTGAAGAGGAAGAGTGCGGATAATGTGACGGCAGTGGTTGTG 1219
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1270 GAGCTGGTTGAGGAAGCTTTGAAGAGGAAGAGTGCTGATAATGTGACGGCAGTGGTTGTG 1329
Query 1220 TGTCTTCAACCACAGCCACCACCAAACTTGGTAGCACCGAGGCTGAGAGTTCACAGAAGC 1279
|||||||| |||||||||||||| ||||||||||| |||||| |||||||||||||||||
Sbjct 1330 TGTCTTCAGCCACAGCCACCACCGAACTTGGTAGCGCCGAGGTTGAGAGTTCACAGAAGC 1389
Query 1280 TTCTCGGCGGAGGGTTTGAAAGATCTACAGAGCTACTTGGATGGCTTGGGGAATTAATTG 1339
||||||||||||||||| |||||| ||||||||||||||||||||||||| || ||||||
Sbjct 1390 TTCTCGGCGGAGGGTTTAAAAGATTTACAGAGCTACTTGGATGGCTTGGGAAACTAATTG 1449
Query 1340 GGGGACATGGGGATGGTGACGAATGATTGATT-CTCtgtttttgttttgtcttttcttac 1398
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1450 GGGGACATGAGGATGGTGACGAATGATTGATTTCTCTGTTTTTGTTTTGTCTTTTCTTAC 1509
Query 1399 aattt-atagttttggttttggaggttttgttctgttAAATTCTTGCAATTTGAGTAACT 1457
||||| ||||||| || ||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1510 AATTTTATAGTTTGGGGTTTGGAGGTTTTGTTCTGTTAAATTCTCGCAATTTGAGTAAGT 1569
Query 1458 TATAACATGAGGCGGCATACAATAATTTATTGTTTGGTAGGATATAttttttttGTCACT 1517
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1570 TATAACATGAGGCGGCATACAATAATTTATTGTTTGGTAGGATATATTTTTTT-GTCACT 1628
Query 1518 TTTGCATAATAATAATTCTGCTTCAGTCT 1546
|||||||||||||||||||||||||||||
Sbjct 1629 TTTGCATAATAATAATTCTGCTTCAGTCT 1657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76304828400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5