BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481416
Length=2241
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25640.1 | Symbols: | SPOC domain / Transcription elongatio... 1989 0.0
AT5G25520.2 | Symbols: | SPOC domain / Transcription elongatio... 243 8e-63
> AT2G25640.1 | Symbols: | SPOC domain / Transcription elongation
factor S-II protein | chr2:10910498-10913969 FORWARD LENGTH=2421
Length=2421
Score = 1989 bits (1077), Expect = 0.0
Identities = 1320/1435 (92%), Gaps = 25/1435 (2%)
Strand=Plus/Plus
Query 213 TCAGATCTCTGGTGGGAGGCAGGATTTTCATGTAATGTTGCCTACTGCTGTTGGTTTAGG 272
||| |||||||||||||| || |||||||||||||||||||||| || ||||||||||||
Sbjct 242 TCATATCTCTGGTGGGAGACAAGATTTTCATGTAATGTTGCCTAGTGTTGTTGGTTTAGG 301
Query 273 ATCAGTTAATATGGATACA-AATCTGTTACCCGGTAAGCGGAAATCTCCGTTGCAGCAAT 331
||||||||||||||||| | | ||||||||| ||||||||||||||||||||||| | |
Sbjct 302 ATCAGTTAATATGGATA-AGACTCTGTTACCTGGTAAGCGGAAATCTCCGTTGCATCCTT 360
Query 332 CTGTGCCAAATAAACGGATGGTACTACCTATGGAACATAGACCATGGGTGTCTGCTCCAA 391
|||||| |||||||||||||| | ||||||||||| | |||| |||| |||||||||||
Sbjct 361 CTGTGCAAAATAAACGGATGGCATTACCTATGGAAGGTCGACCGTGGGCGTCTGCTCCAA 420
Query 392 TGCAGGTGCAGTTATCTTCTGTTTCCCCCAGAACACAGTATTTGCCTGCATCATTTGTTA 451
||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 421 TGCCTGTGCAGTTATCTTCTGTTTCCCCTAGAACACAGTATTTGCCTGCTTCGTTTGTTA 480
Query 452 GTAAGAATAGTTCTGTTTCTTGTAATAAACCCGGTAAGCAAACTGCGGCGAGAAAACAGA 511
|||||||||||| |||||||| || |||||| || |||||| ||||||||||||||| ||
Sbjct 481 GTAAGAATAGTTTTGTTTCTTTTAGTAAACCTGGGAAGCAAGCTGCGGCGAGAAAACCGA 540
Query 512 CTTCGCAGAAACCGATGTTGCTGAAACCTCAGAGTGAATCATCTGGATCTGTTAGGTTTA 571
||| |||||||||||||||||||||||||| ||||| || ||||| ||||| |||| ||
Sbjct 541 CTTTACAGAAACCGATGTTGCTGAAACCTCAAAGTGAGTCGTCTGGTTCTGTGAGGTCTA 600
Query 572 AAATGAGAGAATCTTTAGCTGGTGCATTGGCAATGGTACAGTGTGATATGGAAGTTCCTA 631
|||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 601 AAATGAGAGAATCTTTAGCTGGTGCATTGGCAATGGTACAGTGTCAAATGGATGTTCCTA 660
Query 632 AAGAGTCGAAAAGGTTAGATAGTGAGACTGTAGCTAATCCTCTCGAAGGTCATGTTAGTG 691
| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 661 ACGAGTCGAAAATGTTAGATAGTGAGACTGTAGCTAATCCTCTAGAAGGTCATGTTAGTG 720
Query 692 AGCCAGTGTCAGCTGCTTCTGGAGTTGATGTGATGGTATCTAATGGGAGCACAGAGATTC 751
||||||||||||||||||||||||||||||||||||||||||||| || || ||||| |
Sbjct 721 GGCCAGTGTCAGCTGCTTCTGGAGTTGATGTGATGGTATCTAATGGAAGTACTGAGATGC 780
Query 752 TGACCCTCAGTGATCCTAGTACT-TTAGAAGGTGTCTCTGTTCAGACTGTGTTACCGGAG 810
|||||||||||||||||||| || || | ||| ||||||||||||| ||||||||||||
Sbjct 781 TGACCCTCAGTGATCCTAGTCCTGTT-GCGGGTATCTCTGTTCAGACAGTGTTACCGGAG 839
Query 811 ATTTTGACTATCACCAAGACAACTGATGCCCAAGAAATTATTGCACAAGAACCTGAGGCT 870
|||||| ||||| ||||||||| ||||||||||| | ||||||||||
Sbjct 840 ATTTTGTCTATCGCCAAGACAAGTGATGCCCAAG-------T--------ACCTGAGGCT 884
Query 871 TTAAAACCGTTTGTGCAAGACAATGTTTCATATAGTGACAATGTGTTTTCAAAAGATGAT 930
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 GTAAAACCGTTTGTGCAAGACAATGTTTCATATAGTGACAATGTGTTTTCAAAAGATGAT 944
Query 931 CTTTTGCAAGGGAATGACCTCTCTTGGGCTCTTGAGTCGGATATTGATTTTACTGTCAAT 990
|||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct 945 CTTTTGCAAGGGAATGACCTCTCTTGGGCTCTCGAGTCGGACATTGAGTTTACTGTCAAT 1004
Query 991 TGTCAAAATGATATGATTGGAGCAATGGCTAATGATGGGAGTCAGGAGAAATTGTTAATG 1050
||||||||||| |||||||| |||||||||||||||||||| | ||| ||||||||| ||
Sbjct 1005 TGTCAAAATGAAATGATTGGTGCAATGGCTAATGATGGGAGCCTGGAAAAATTGTTACTG 1064
Query 1051 GATCCACAAGTTTTGGCATTTGAAATAGAGGCAGAACTGTTTAAGTTATTTGGTGGTGTG 1110
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1065 GATCCACAAGTTTTGGCATTTGAAATAGAGACAGAACTCTTTAAGTTATTTGGTGGTGTA 1124
Query 1111 AATAAGAAATATAAAGAGAAAGGAAGGTCTCTCTTGTTCAATTTGAAAGACAAGAGTAAT 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 AATAAGAAATATAAAGAGAAAGGAAGGTCTCTCTTGTTCAATTTGAAAGACAAGAGTAAT 1184
Query 1171 CCTAAACTCAGGGAAAAGGTTATGTATGGAGAAATTGCAGCAGAGCGATTGTGTTCCATG 1230
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CCTAAACTCAGGGAAAAAGTTATGTATGGAGAAATTGCAGCAGAGCGATTGTGTTCCATG 1244
Query 1231 TCAGCAGAAGAACTTGCTTCAAAGGAACTAGCTGAGTGGCGACAAGCAAAAGCAGAAGAG 1290
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 TCAGCAGAGGAACTTGCTTCAAAGGAACTAGCTGAGTGGCGACAAGCAAAAGCAGAAGAG 1304
Query 1291 ATGGCTCAGATGGTTGTTCTGCAGGACACAGAGGTGGATATCAGAAGCCTAGTAAGGAAA 1350
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1305 ATGGCTCAGATGGTTGTTCTGCAGGACACTGAGGTGGATATCAGAAGCCTAGTAAGGAAA 1364
Query 1351 ACACACAAAGGAGAGTTCCAAGTGGAAGTTGAACCAATGGATAGTGGCTCAGTAGAGGTC 1410
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1365 ACACACAAAGGAGAGTTCCAAGTGGAAGTTGAACCAATGGATAGTGGTTCTGTAGAGGTC 1424
Query 1411 TCTGTTGGAATGAGTTCGCTTAATTGGTCTCGACCAAAGAATATCAAGAAGAAAACCCCT 1470
|||||||||||||||||| |||| ||||||||| |||||||| | |||||||||||||||
Sbjct 1425 TCTGTTGGAATGAGTTCGATTAACTGGTCTCGAACAAAGAATTTTAAGAAGAAAACCCCT 1484
Query 1471 TCCATTACTAAAACACTTGGAATCAAGAAGGAATTGAAT-GTCTCTGATGAGGGCGA-TG 1528
||||| || ||||| |||||| ||||||| |||||||| | |||| ||||| || | ||
Sbjct 1485 TCCATCACGAAAACTCTTGGAGTCAAGAATGAATTGAACAG-CTCTAATGAGAGC-ACTG 1542
Query 1529 GCGC-AATAAATGGAGTCACAATAGATGATGAGATGCAGGCTGCCACTGTATCTCTTCCT 1587
| || |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1543 G-GCCAATAAACGGAGTCACAATAGATGATGAGATGCAGGCTGCCACTGGATCTCTTCCT 1601
Query 1588 CCAATTGTCTCTCTTGATGAATTCATGTCATCCATAGATTCTGAATCTCCGTCTG 1642
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1602 CCAATTGTCTCTCTTGATGAATTCATGTCATCCATAGATTCTGAATCTCCGTCTG 1656
Score = 769 bits (416), Expect = 0.0
Identities = 490/526 (93%), Gaps = 4/526 (1%)
Strand=Plus/Plus
Query 1718 CATCACCAGTTAAGGCTGAGGATGGTGACATAGTATCGTTAAAGCCTGA-TTCTGATTTG 1776
||||||| ||||| |||||||||| |||||||||||||| ||||||| | ||||||||||
Sbjct 1813 CATCACCTGTTAACGCTGAGGATGCTGACATAGTATCGTCAAAGCCT-AGTTCTGATTTG 1871
Query 1777 AAATCTGAAATTATATCTGGTTTCATACCTGATGGTGAACGCGTATGGGAAGGTGCGCTC 1836
||||| ||| || ||||| ||||||||||||||||||||| |||||||||||| ||||
Sbjct 1872 AAATCCAAAACTACATCTGTTTTCATACCTGATGGTGAACGTTTATGGGAAGGTGTGCTC 1931
Query 1837 CAGCTGAGTGCTTCTACTGTGAGCTCTGTCATCGGCATTCTAAGAAGTGGCGAAAAGACT 1896
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1932 CAGCTGAGTCCTTCTACTGTGAGCTCTGTCATCGGCATTCTAAGAAGTGGCGAAAAGACT 1991
Query 1897 ACTACTAAAGAGTGGCCTATGTTGCTTGAGATCAAGGGTAGAGTCAGATTAGATGCATTT 1956
||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 1992 ACTACAAAAGAGTGGCCTATTTTGCTCGAGATTAAGGGTAGAGTCAGATTAGATGCATTT 2051
Query 1957 GAGAAATTTGTTCGAGAGCTCCCAAATTCCAGGAGCCGTGCTGTTATGGTTATGACTTTC 2016
||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| ||||
Sbjct 2052 GAGAAGTTTGTTCGAGAGCTCCCAAATTCCAGGAGTCGTGCTGTAATGGTTATGTGTTTC 2111
Query 2017 GTCTGTAGAGAAGAGTGCTCAAAGACAGACCAAGAGATCATTTCCGAGGTGGTGGATTCG 2076
||||| | ||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 2112 GTCTGCAAAGAAGAGTGCTCAAAGACAGAACAAGAGAACATTTCCGAGGTGGTGGATTCA 2171
Query 2077 TACGCTAAAGATGAGAGGGTGGGTTACGCAGAACCGGCTTCAGGAGTTGAGCTATACCTA 2136
||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 2172 TACGCTAAAGATGGGAGGGTGGGTTATGCAGAACCAGCTTCAGGAGTTGAGCTATACCTA 2231
Query 2137 TGCCCAACCCGTGGGAGAACCG-CAGAGATTCTAAACAAGATTGTTCCGAGAAACCAACT 2195
|||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 2232 TGCCCAACCCGTGGGAGAACTGTC-GAGATTCTAAACAAGATTGTTCCGAGAAACCAACT 2290
Query 2196 CGATTTCTTGAAATCTTTAAATGATGATGGTCTTATAGGTGTTGTT 2241
|||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2291 CGATTTCTTGAAATCTATAAATGATGATGGTCTTATAGGTGTTGTT 2336
Score = 209 bits (113), Expect = 8e-53
Identities = 187/220 (85%), Gaps = 16/220 (7%)
Strand=Plus/Plus
Query 1 AAGTTCCATTTAGGGTTTTCTTCTTCACTAT--ACACTCATGGTCTTCTCTTTCCAATCG 58
||||||| ||||||||||||||||||||||| | ||||||| ||||||||| |||||||
Sbjct 1 AAGTTCCCTTTAGGGTTTTCTTCTTCACTATAGAGACTCATGCTCTTCTCTTCCCAATCG 60
Query 59 CCGCCTCTGATCTCTCTTCCTCGCTTCTCAGATTAGGTAATTCTTTGTTTTGTTACATTG 118
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 61 CCGCCTCTGATCTCTCTTCCTCGCTTCTCAGATTAGC-----CTTTGTTTTGTTAGATTG 115
Query 119 ATTTGCCTGTTATGTCCAACAATCTCTCGCCTCAGCATTGTTTACAAATGGGTCAATTCA 178
||||| | | |||||||||||||| | |||||||| |||| | ||||||||||||||||
Sbjct 116 ATTTG--T-T-ATGTCCAACAATCTATTGCCTCAGCCTTGTATGCAAATGGGTCAATTCA 171
Query 179 TCAATGTTGAC-ACT---ACTCCAGACCTGACTTCTAATC 214
| ||||| | ||| ||||| || |||| ||||||||
Sbjct 172 TTAATGTCC-CTACTCCCACTCCTGAGCTGATTTCTAATC 210
Score = 137 bits (74), Expect = 4e-31
Identities = 92/100 (92%), Gaps = 3/100 (3%)
Strand=Plus/Plus
Query 1639 TCTGTGTCAGATAATAATGATGCAGAGGCGGTTTTAGTTTGTATATCACCCAAAGAAAGT 1698
||||| |||||||||||||||| ||||| |||||||| || | ||||||||||||||||
Sbjct 1689 TCTGTTTCAGATAATAATGATGTAGAGGAGGTTTTAG-TT-T-CATCACCCAAAGAAAGT 1745
Query 1699 GCTAATATTGATCTTGGTACATCACCAGTTAAGGCTGAGG 1738
||||||||||||||| ||||||||||||||||||||||||
Sbjct 1746 GCTAATATTGATCTTTGTACATCACCAGTTAAGGCTGAGG 1785
> AT5G25520.2 | Symbols: | SPOC domain / Transcription elongation
factor S-II protein | chr5:8885088-8889620 FORWARD LENGTH=3334
Length=3334
Score = 243 bits (131), Expect = 8e-63
Identities = 291/369 (79%), Gaps = 8/369 (2%)
Strand=Plus/Plus
Query 1050 GGATCCACAAG-TTTTGGCATTTGAAATAGAGGCAGAACTGTTTAAGTTATTTGGTGGTG 1108
||||||| || | ||||||| | |||| ||| ||||| |||||| ||||||| ||||
Sbjct 1278 GGATCCA-GAGCTCTTGGCATCTAAAATTGAGTTGGAACTTTTTAAGCTATTTGGAGGTG 1336
Query 1109 TGAATAAGAAATATAAAGAGAAAGGAAGGTCTCTCTTGTTCAATTTGAAAGACAAGAGTA 1168
|||| ||||| || |||||||| |||||||||||||| ||||||||||| || |||| |
Sbjct 1337 TGAACAAGAAGTACAAAGAGAAGGGAAGGTCTCTCTTATTCAATTTGAAGGATAAGAACA 1396
Query 1169 ATCCTAAACTCAGGGAAAAG-GTTATGTATGGAGAA-AT-TGCAGCAGAGCGATTGTGTT 1225
||||| | || || | |||| || |||| ||| || || | | ||||| |||| |||
Sbjct 1397 ATCCTGAGCTAAGAG-AAAGTGTCATGTCCGGA-AAGATAT-CTCCAGAGAGATTATGTA 1453
Query 1226 CCATGTCAGCAGAAGAACTTGCTTCAAAGGAACTAGCTGAGTGGCGACAAGCAAAAGCAG 1285
||| |||| || ||||||||||| ||||| || || |||||||||||||||||||||
Sbjct 1454 ATATGACAGCTGAGGAACTTGCTTCTAAGGAGCTTTCTCAGTGGCGACAAGCAAAAGCAG 1513
Query 1286 AAGAGATGGCTCAGATGGTTGTTCTGCAGGACACAGAGGTGGATATCAGAAGCCTAGTAA 1345
|||||||||| |||||||||| || | ||||||||| | ||| |||||| || || |
Sbjct 1514 AAGAGATGGCGGAGATGGTTGTCCTACGGGACACAGACATTGATGTCAGAAATCTGGTGA 1573
Query 1346 GGAAAACACACAAAGGAGAGTTCCAAGTGGAAGTTGAACCAATGGATAGTGGCTCAGTAG 1405
||||||| || ||||| |||||||| || ||| |||| || | || ||||| |||| |
Sbjct 1574 GGAAAACGCATAAAGGTGAGTTCCAGGTAGAAATTGATCCCGTTGACAGTGGGACAGTGG 1633
Query 1406 AGGTCTCTG 1414
| |||||||
Sbjct 1634 ATGTCTCTG 1642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111194207175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5