BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481420
Length=1457
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25680.1 | Symbols: MOT1 | molybdate transporter 1 | chr2:10... 2246 0.0
> AT2G25680.1 | Symbols: MOT1 | molybdate transporter 1 | chr2:10933061-10934551
REVERSE LENGTH=1491
Length=1491
Score = 2246 bits (1216), Expect = 0.0
Identities = 1389/1471 (94%), Gaps = 17/1471 (1%)
Strand=Plus/Plus
Query 1 CAAAACACAAACAATGGAGTCTCAGTCTCAGAGTGGTCAACACCAAACCCCGAAACGTTC 60
||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 2 CAAAACAGAAACAATGGAGTCTCAGTCTCAGAGAGGTCAACACGAAACCCCGAAACGTTC 61
Query 61 TCGGTTCACCGGAATGTTCCATAAACTGAAGACGAATCTTGTTTTCCGGTCGAAGCTAGC 120
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 62 TAGGTTCACCGGAATGTTCCATAAACTGAAAACGAATCTTGTTTTCCGGTCGAAGCTAGC 121
Query 121 CGAAATAAACGGTGCAATGGGTGATCTTGGTACTTACATACCAATCGTCCTCGCTTTAAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 CGAAATAAACGGTGCAATGGGTGATCTTGGTACTTACATACCAATCGTCCTCGCTTTAAC 181
Query 181 TCTGGCCAAGGATTTGGATTTAGGCACAACACTGATATTCACCGGGATATACAACGCGAT 240
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 182 TCTAGCCAAGGATTTGGATTTAGGCACAACACTGATATTCACCGGCATATACAACGCGAT 241
Query 241 AACTGGAGCGGTTTACGGTGTCCCCATGCCGGTTCAACCGATGAAATCGATTGCAGCCGT 300
||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 242 AACCGGAGCAGTTTACGGTGTCCCCATGCCGGTTCAACCGATGAAATCGATAGCAGCCGT 301
Query 301 GGCGATTTCGTCTACCGCGGAAGATTTCGGTATACCGGAGATTATGGCTGCTGGAATTTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 302 GGCGATTTCGTCTACCGCGGAAGATTTCGGTATACCGGAGATTATGGCTGCCGGAATATG 361
Query 361 CACCGGAGGGATCTTGTTCGTGTTAGGGATCTCTGGTTTGATGCAGCTTGTGTTCAATAT 420
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 362 TACCGGAGGGATCTTGTTCGTGTTGGGGATCTCTGGTTTGATGCAGCTTGTGTTCAATAT 421
Query 421 AATTCCTTTATCGGTTGTTAGAGGAATTCAGTTGTCACAAGGCTTAGCCTTTGCCATGTC 480
||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 422 AATCCCTTTATCGGTTGTTAGAGGGATTCAGTTGTCACAAGGCTTAGCTTTTGCCATGTC 481
Query 481 TGCGGTTAAGTATATAAGGAAAGAGCAGAATTTTTCAAAGTCAAAGAGTGTCGGTGATAG 540
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 482 TGCGGTTAAGTATATAAGGAAAGAGCAGAATTTTTCGAAGTCAAAGAGTGTTGGTGATAG 541
Query 541 GCCATGGTTAGGGCTTGATGGTTTGGTTTTGGCTTTGGTTTGTGTTCTGTTCATAATTCT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 542 GCCATGGTTAGGGCTTGATGGTTTGGTTTTGGCTTTGGTTTGTGTTCTGTTCATAGTTCT 601
Query 601 TGTTAATggagatggggaagaagaagaggaagaggaagagggagatggttcaagaggaag 660
||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 602 TGTGAATGGAGATGGTGAAGAAGAAGAGGAAGAGGAAGAAGGAGATGGTTCGAGAGGAAG 661
Query 661 aagaagacaggtttcgataaggaaggTTATAGCTAATGTGCCATCTGCTCTGTTGATATT 720
| ||||| || |||| | ||||||||||||||||| |||||||||||||||||||||||
Sbjct 662 AGGAAGATGGGGTTCGGTGAGGAAGGTTATAGCTAACGTGCCATCTGCTCTGTTGATATT 721
Query 721 CTTGTTAGGTGTTGTTTTGGCATTTATAAGGAAGCCGAGTATTGTACATGGCATCAAGTT 780
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 722 CTTGTTGGGTGTTGTTTTGGCATTTATAAGGAAGCCGAGTATTGTACATGACATCAAGTT 781
Query 781 TGGACCGTCGAAGATGAAGATAGTGAGAATAAGCAAAAAAGCATGGAAAAACGGCTTTTT 840
||||||||| ||||||||||| |||||||||||| ||||||||||| |||||| |||||
Sbjct 782 TGGACCGTCAAAGATGAAGATTGTGAGAATAAGCCGAAAAGCATGGAGAAACGGGTTTTT 841
Query 841 GAAAGGGACGGTCCCGCAGTTACCT-TTGTCTGTTCTTAATTCTGTTGTGGCTGTGTGTA 899
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 842 GAAAGGGACGGTCCCGCAGTTACCTCTT-TCTGTTCTTAATTCTGTTGTGGCTGTGTGTA 900
Query 900 AGCTGTCGTATGATCTGTTCCCCGAGAAGGAGTTCTCGGCTGCATCGGTTTCGATGACTG 959
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 901 AGCTGTCGTATGATCTGTTCCCCGAGAAGGAGTTCTCGGCTGCATCGGTTTCCATGACTG 960
Query 960 TTGGGCTGATGAATATGGTGGGGTGTTGGTTTGGGGCAATGCCTACTTGTCATGGAGCTG 1019
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 961 TTGGGCTGATGAATATGGTGGGATGTTGGTTTGGAGCAATGCCTACTTGTCATGGAGCTG 1020
Query 1020 GTGGGTTAGCCGGGCAGTACAAGTTTGGTGGGAGGAGTGGTGGGTGTGTGGCACTGTTGG 1079
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GTGGTTTAGCCGGGCAGTATAAGTTTGGTGGGAGGAGTGGTGGGTGTGTGGCACTGTTGG 1080
Query 1080 GAGTGGCTAAACTGGTGCTAGGGTTGGTCTTAGGAGGTTCATTGGTGGGTATATTGGAGA 1139
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1081 GAGTAGCTAAACTGGTGCTAGGGTTGGTCTTGGGAGGTTCATTGGTGGGTATATTGGAGA 1140
Query 1140 AGTTTCCGGTTGGTGTGCTCGGGGCATTGCTTTTATTTGCAGGGATAGAGCTTGCAATGG 1199
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1141 AGTTTCCGGTTGGTGTGCTCGGGGCATTGCTACTATTTGCAGGGGTAGAGCTTGCAATGG 1200
Query 1200 CGGCTAGAGATATGAATACAAAGGGAGATGCATTTGTGATGCTTATATGCAC-TGCCGTC 1258
||||||||||||||||||||||||||||||||||||| |||||||| ||||| | | |||
Sbjct 1201 CGGCTAGAGATATGAATACAAAGGGAGATGCATTTGTAATGCTTATGTGCACAT-CAGTC 1259
Query 1259 TCTTTGGGATCAAATGCTGCCATAGGCTTTGTGGCTGG-GATTCTTTTGTATGTGGTTTT 1317
|||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||
Sbjct 1260 TCTTTGGGATCAAATGCTGCCATAGGCTTTGTTGCTGGTGAT-CTTTTGTATGTGGTTTT 1318
Query 1318 GTGGATGAGGAACTACGGGCGAGCCAAGCCGATCAGCCTTCCCCCGCAATCCGATGAACA 1377
||||||| |||||||||||||||| ||||||| |||||||||||||||||||| ||||||
Sbjct 1319 GTGGATGCGGAACTACGGGCGAGCGAAGCCGAGCAGCCTTCCCCCGCAATCCGGTGAACA 1378
Query 1378 TGCTTGAAAGTCTT-TAGTGTTC-GC-TC-T-T-C--T-TTCTTCT-A-TGCTTTCCAAT 1426
|||||||||||||| | |||| | | | | | | ||||||| | ||||||| ||
Sbjct 1379 TGCTTGAAAGTCTTCTTTTGTTGTGTGTAGTGTTCGCTCTTCTTCTTAATGCTTTCGTAT 1438
Query 1427 AAAAAGTTCAAAACTTCATTGAACTGCATAT 1457
||||||||||||||||| |||||||||||||
Sbjct 1439 AAAAAGTTCAAAACTTCTTTGAACTGCATAT 1469
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71836979895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5