BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481422
Length=1292
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25690.1 | Symbols: | Protein of unknown function (DUF581) ... 1683 0.0
> AT2G25690.1 | Symbols: | Protein of unknown function (DUF581)
| chr2:10940147-10942255 REVERSE LENGTH=1446
Length=1446
Score = 1683 bits (911), Expect = 0.0
Identities = 1207/1339 (90%), Gaps = 63/1339 (5%)
Strand=Plus/Plus
Query 1 AGAGATTACAAGATCCATATT---GAAGAAG-------A-AACCGTAAAATGCTGAAGAC 49
||||||||||||||||||||| ||||||| | ||||||||||||||||||||
Sbjct 40 AGAGATTACAAGATCCATATTGAAGAAGAAGAAACATCATAACCGTAAAATGCTGAAGAC 99
Query 50 AAGAGCAATGTTTCCTCACAAAGATCAAGCAATGTCTCTGTCTTTGGATCAACAATCTGA 109
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 100 AAGAGCAATGTTTCCTCACAAAGATCAAGCAATGTCGCTGTCTTTGGATCCACAATCTGA 159
Query 110 TCTTCTTGTCGGACTCAACAACACCAGACCGATCACTAACCCACTTGCTTTGAGTCTTTT 169
|||| | ||||| | || ||||| |||||| |||||||||||||| ||||||||||||||
Sbjct 160 TCTTGTCGTCGGTCACACCAACAACAGACCAATCACTAACCCACTGGCTTTGAGTCTTTT 219
Query 170 GATTGGTCTGAACAACAACAACAAGTGTATCTCAGATTCTGATTTTGTCAGGAGTCCCAA 229
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 220 GATTGGTCTGAACAACAAGAACAAGTGTATCTCAGATTCTGATTTTGTCAGGAGTCCCAA 279
Query 230 ATCTCCTCTTGAATTTAGGATCTTATCTACAATGGCTGATTCATTTTTCCTCAGATCTCC 289
||||||||||||||||||| | || |||||||||||||||||||||||||| ||||||||
Sbjct 280 ATCTCCTCTTGAATTTAGGGTGTTGTCTACAATGGCTGATTCATTTTTCCTTAGATCTCC 339
Query 290 TAGATCATCACTCACTGCTCATCTTAACTGTTGTTGTGGTCCTGCTGCTAAAGTTGGTTT 349
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 340 TCGATCATCACTCACTGCTCATCTTAACTGTTGTTGTGGCCCTGCTGCTAAAGTTGGGTT 399
Query 350 AAGCATTGTTGATTCTCTTGGTGATGATCGGTGTTTGTTACCTGATGTTGTGTTTGGACC 409
||||||||||||||||||||| |||||||||||||||||||| ||| | |||||||||||
Sbjct 400 AAGCATTGTTGATTCTCTTGGCGATGATCGGTGTTTGTTACCGGATATCGTGTTTGGACC 459
Query 410 CGCGTTGAGGATCAAACGTTCGGAGG---T---------T---AA---GTTGTTCCCTGT 451
|| |||||||||||| ||||||||| | | || ||||||||||||
Sbjct 460 GGCTTTGAGGATCAAATGTTCGGAGGTTATGGACAAACATCCCAAGTTGTTGTTCCCTGT 519
Query 452 AG-C--CAAGTCTATGAAGATTGAAAAGGAAAGATCTGGTGTTGTTTTCGAAATCGGTGA 508
|| | |||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 520 AGCCAACAAGTCTAAGAAGATTGAAAATGAAAGATCTGGTGTTGTTTTCGAAATCGGTGA 579
Query 509 TAACTCTTGTGAGGCTGAGCCGATTGGGTTGAGAAACCGATCCTTTTCTGCGAATGATTG 568
|||||||| |||| |||| ||| |||||||||||||||| ||||||||||||||||||||
Sbjct 580 TAACTCTTCTGAGACTGAACCGGTTGGGTTGAGAAACCGGTCCTTTTCTGCGAATGATTG 639
Query 569 TCTGCGAAAAACCCGAGTTCTGTCTCGATCCAAGTTGGGCGC-AGAAGGGGACTTCCAGG 627
||||||||||||||| ||||||||||||||||||||||| | |||||| ||||||| ||
Sbjct 640 TCTGCGAAAAACCCGTGTTCTGTCTCGATCCAAGTTGGG-ACAAGAAGGAGACTTCCCGG 698
Query 628 GGAGTGGTTCTGAAAATGCATTCTCCTCTTGTCTATCTGAGGATGACATGGAGGATTATA 687
||||||||||||| ||||| || | ||| | ||||||||||| ||||||||||| |
Sbjct 699 GGAGTGGTTCTGACAATGC-TT-T-CTC----C--TCTGAGGATGATATGGAGGATTACA 749
Query 688 CTTGTATCATTGCACATGGTCCTAACCCGAAAACCACTCATATTTATGGTGACCGAGTTT 747
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 750 CTTGTATCATTGCACATGGTCCTAACCCGAAAACCACTCATATCTATGGTGACCGAGTTT 809
Query 748 TAGAGTGTCACAAGAATGAGTTGAAGGGAGATGATGATAATAAAGAGCAGAATATCGAAT 807
|||||||||||||||||||||| ||||||||||| |||||||||||| | | | | | |
Sbjct 810 TAGAGTGTCACAAGAATGAGTTAAAGGGAGATGAAGATAATAAAGAG-A-AGT-TTGGTT 866
Query 808 CGGAGTT----T--GATAACTTCCTCAGCATCTGCAACTTCTGCAACAAGAAACTCGGAG 861
| | ||| | |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 867 CTGTGTTCCCCTCCGATAACTTCCTCGGCATCTGCAACTTCTGCAACAAGAAACTCGGAG 926
Query 862 GTGACGACGACATATATATGTACCGAGATAAATCATTTTGCAGTGCAGAGTGTCGTTCAG 921
||| |||||||||||||||||| ||||| || ||||||||||||| ||||||||||||||
Sbjct 927 GTGGCGACGACATATATATGTATCGAGAGAAGTCATTTTGCAGTGAAGAGTGTCGTTCAG 986
Query 922 AGGAGATGATGATAGAAGAGGAGGACCAGGAAGAGCCGTGCATAGCTATGCATGAATCTT 981
|||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 987 AGGAGATGATGATAGATGAGGAGGATTTGGAAGAGCCGTGCATAGATATGCATGAATCTT 1046
Query 982 TAAAGAAGCTCTTCTGAACAAGAAGCAGCTATGACGATGGTCATGGGACGAGCTTTTATA 1041
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1047 TAAAGAAGCTCTTCTGAACAAGAAGCAGCTATGACGATGGCCATGGGACGAGCTTTTATA 1106
Query 1042 GACCCGACCATCGTCTTTTAACTACCTAAAGACTT-ATTATA-TAT--GTATTGACTAGT 1097
||||||| ||||||||||||||||||||||||||| |||||| ||| ||||||||||||
Sbjct 1107 GACCCGATCATCGTCTTTTAACTACCTAAAGACTTTATTATAATATATGTATTGACTAGT 1166
Query 1098 ACTGTCATGCCAATGTTAGGTAACATGTGGCATTAAACCCGTTCATCCGTCTACAAAGAG 1157
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1167 ---GTCATGCCAATGTTAGGTAACATGTGGCACTAAACCCGTTCATCCGTCTACAAAGAG 1223
Query 1158 CTGTGTCTATGCACATCTATTAGCAGCTGCAGCAGCCACGGATGGATTCGTCGGCTTTCT 1217
|||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1224 CTGTGTTTATGCACATCTATTAGCAGCTGCAGCAGCCACGGATGGATTGGCCGGCTTTGG 1283
Query 1218 TTTTGTATATTTTGTAATGGGttt--tttttttt-ttt-ttCTGGATATCGAAGTTGAAG 1273
|||||||||||||||||||||||| |||||||| ||| || ||||| ||||||||||||
Sbjct 1284 TTTTGTATATTTTGTAATGGGTTTCGTTTTTTTTGTTTGTTTTGGATGTCGAAGTTGAAG 1343
Query 1274 GATACTACTAAGATCTTAA 1292
|||||||||||||||||||
Sbjct 1344 GATACTACTAAGATCTTAA 1362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63553889970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5