BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481423
Length=1299
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25710.1 | Symbols: HCS1 | holocarboxylase synthase 1 | chr2... 1836 0.0
AT1G37150.2 | Symbols: HCS2 | holocarboxylase synthetase 2 | ch... 1199 0.0
> AT2G25710.1 | Symbols: HCS1 | holocarboxylase synthase 1 | chr2:10952658-10955377
FORWARD LENGTH=1481
Length=1481
Score = 1836 bits (994), Expect = 0.0
Identities = 1146/1218 (94%), Gaps = 16/1218 (1%)
Strand=Plus/Plus
Query 1 AGCAAGATGATTGATTTGGTTACCTCATAGTTTTGTTTTAATGGAAGCAGTTCGTT---T 57
||||||||||||||||||| || || | | | | ||||||||||||||||||||
Sbjct 28 AGCAAGATGATTGATTTGGCTA-CT--T--TATAG-TTTAATGGAAGCAGTTCGTTCAAC 81
Query 58 AACAACTTTATCTAATTTTCATCTACTGAATATTTTAGTCCTGCGTTCTCTCAAGCCTCT 117
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 82 AACAACCTTATCTAATTTTCATCTACTGAATATTTTAGTCCTGCGTTCTCTCAAGCCTCT 141
Query 118 GCGTCGTCTATCTTTCTCTGTCTCTGCCTCAGCAATGGAGAGTGATGCTTCTTGTAACTT 177
|| |||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||
Sbjct 142 GCATCGTCTATCTTTCTCTTTCTCTGCCTCAGCAATGGAGAGTGATGCATCTTGTAGCTT 201
Query 178 GGTTTTGTATGGGAAGTCCTCTGTGGAAACTGAGATAGCAAAGTGTTTGAAGAATAAGAA 237
||||||| |||||| |||||||||||||||||| |||||||| |||||||||| |||||
Sbjct 202 AGTTTTGTGTGGGAAATCCTCTGTGGAAACTGAGGTAGCAAAGGGTTTGAAGAACAAGAA 261
Query 238 CTCACTTACACTCCCAGATAATACCAAAGTTTCACTCTTTTTAGAATCTGAGGCTAAGAA 297
||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 262 CTCTCTTAAACTCCCAGATAATACCAAAGTTTCACTCATTTTAGAATCTGAGGCTAAGAA 321
Query 298 TTTGGTTAAAGATGATG---ATTCTTTCAATCTTTCACTCTTTATGAACTCGATTATAAC 354
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 322 TTTGGTTAAAGATGATGATAATTCCTTCAATCTTTCACTCTTTATGAACTCGATTATAAC 381
Query 355 TCATCGGTTTGGGCGGTTTCTCATTTGGTCTCCGCGCTTGTCTTCCACGCACGATGTTGT 414
|||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 382 TCATCGGTTTGGACGGTTTCTCATTTGGTCTCCGCGTTTGTCTTCCACTCACGATGTTGT 441
Query 415 TTCTCATAATTTCTCTGAGCTTCCAGTTGGTTCAGTTTGTGTCACAGATATCCAGTTTAA 474
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 442 TTCTCATAACTTCTCTGAGCTTCCAGTTGGTTCAGTTTGTGTCACTGATATCCAGTTTAA 501
Query 475 AGGTCGAGGCAGAACAAAGAATGTATGGGAATCTCCAAAGGGTTGTCTTATGTATTCTTT 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 GGGTCGAGGCAGAACAAAGAATGTATGGGAATCTCCAAAGGGTTGTCTTATGTATTCTTT 561
Query 535 TACTCTAGAAATGGAAGATGGTCGAATCGTGCCGTTGATACAGTATGTGGTATCTCTTGC 594
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 562 TACTCTAGAAATGGAAGATGGTCGAGTCGTGCCTTTGATACAGTATGTGGTATCTCTTGC 621
Query 595 TGTAACTGAGGCAGTGAAAGATGTTTGTGACAAGAAGGGTTTGCCGTACATTGACGTTAA 654
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 622 TGTAACTGAGGCAGTGAAAGATGTTTGTGACAAGAAGGGTTTGCCGTACATTGATGTTAA 681
Query 655 AATTAAGTGGCCAAATGATCTCTACTTGAATGGTCTTAAGGTTGGAGGCATTTTGTGTAC 714
||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 682 AATAAAGTGGCCAAATGATCTGTACGTGAATGGTCTTAAGGTTGGAGGCATTTTGTGTAC 741
Query 715 CTCTACATATAGATCAAAGAAGTTCCATGTCAGTGTTGGTGTGGGGTTGAATGTGGACAA 774
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 742 CTCTACGTATAGATCAAAGAAGTTCAATGTCAGTGTTGGTGTGGGGTTGAATGTGGACAA 801
Query 775 CGAGCAACCGACGACGTGTTTAAATGCAGTACTAAAAGGCATGTCTCCTGAATCAACCCT 834
|| ||||||||| ||||| |||||||||||||||||||||||| |||||||||||| |||
Sbjct 802 CGGGCAACCGACCACGTGCTTAAATGCAGTACTAAAAGGCATGGCTCCTGAATCAAACCT 861
Query 835 ACTTAAAAGAGAGGAAATCCTTGGTGCCTTCTTTCATAAATTTGAAAAATTCTTTGATCT 894
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 862 ACTTAAAAGAGAGGAAATCCTTGGTGCCTTCTTTCATAAATTTGAAAAATTCTTCGATCT 921
Query 895 ATTCATGGACCAAGGCTTTAAATCTCTGGAGGAGCTTTACTACAGAACATGGTTACACAG 954
||||||||||||||| ||||||||||| || |||||||||||||| |||||| |||||||
Sbjct 922 ATTCATGGACCAAGGTTTTAAATCTCTCGAAGAGCTTTACTACAGGACATGGCTACACAG 981
Query 955 TGAGCAAAGAGTGATTGTTGAAGAAAAAGGAGAGGACCAAGTTGTTCAAAATGTTGTGAC 1014
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 982 CGAGCAAAGAGTGATTGTTGAAGACAAAGTAGAGGACCAAGTTGTTCAAAATGTTGTGAC 1041
Query 1015 TATCCAGGGTTTGACATCTTCAGGATATTTACTGGCTATTGGAGATGACAATCAAATGTA 1074
||||||||||||||| ||||| |||||||| |||||| ||||||||||||||||||||||
Sbjct 1042 TATCCAGGGTTTGACTTCTTCTGGATATTTGCTGGCTGTTGGAGATGACAATCAAATGTA 1101
Query 1075 TGAGCTTCACCCTGATGGCAATAGTTTCGACTTTTTCAAAGGTCTGGTTCGAAGAAAAAT 1134
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1102 TGAGCTTCACCCTGATGGCAATAGTTTTGACTTTTTCAAAGGTCTGGTTCGAAGAAAAAT 1161
Query 1135 ATGATCCAAAGATTTTCTTGCTGGTGGAAGTAGATGCTGTG--T-GTTT-AGTACCATGG 1190
|||||||||||||||||||||||||| ||||||||| |||| | |||| ||||||||||
Sbjct 1162 ATGATCCAAAGATTTTCTTGCTGGTGAAAGTAGATGTTGTGCGTTGTTTTAGTACCATGG 1221
Query 1191 CCACAACTAATATCAGTT 1208
|||||||| ||||||||
Sbjct 1222 ACACAACTATTATCAGTT 1239
> AT1G37150.2 | Symbols: HCS2 | holocarboxylase synthetase 2 |
chr1:14174981-14177302 REVERSE LENGTH=1129
Length=1129
Score = 1199 bits (649), Expect = 0.0
Identities = 895/1012 (88%), Gaps = 23/1012 (2%)
Strand=Plus/Plus
Query 148 AGCAATGGAGAGTGATGCTTCTTGTAACTTGGTTTTGTATGGGAAGTCCTCTGTGGAAAC 207
||| ||||| | ||||||||| |||| ||||||||| ||||| || |||||||| |||||
Sbjct 88 AGCCATGGATATTGATGCTTCGTGTAGCTTGGTTTTATATGGTAAATCCTCTGTAGAAAC 147
Query 208 TGAGATAGCAA-AGTGTTTGAAGAATAAGAAC-TCACTTACACTCCCAGATAATACCAAA 265
||| | ||||| | |||||||||| || ||| | |||| ||||||||||||| |||||
Sbjct 148 TGATACAGCAACA-CGTTTGAAGAACAATAACGT-TCTTAAACTCCCAGATAATTCCAAA 205
Query 266 GTTTCACTCTTTTTAGAATCTGAGGCT-AAGAAT-TTGGTTAAAGATGATGATTC-T--T 320
|||||| |||||||| ||||||| | | |||||| || || | |||||||||||| | |
Sbjct 206 GTTTCAATCTTTTTACAATCTGA-GATCAAGAATCTT-GTCAGAGATGATGATTCTTCCT 263
Query 321 TCAATCTTTCACTCTTTATGAACTCGATTAT-AACTCATCGGTTTGGGCGGTTTCTCATT 379
|||||||||| | || |||||||||||| | |||||||||||||| ||||||||||||
Sbjct 264 TCAATCTTTCGTTGTTCATGAACTCGATT-TCGACTCATCGGTTTGGTCGGTTTCTCATT 322
Query 380 TGGTCTCCGCGCTTGTCTTCCACGCACGATGTTGTTTCTCATAATTTCTCTGAGCTTCCA 439
|||||||| |||||||||||| |||||||||||||||||||| ||||||||| |||||
Sbjct 323 TGGTCTCCATACTTGTCTTCCACTCACGATGTTGTTTCTCATAACTTCTCTGAGATTCCA 382
Query 440 GTTGGTTCAGTTTGTGTCACAGATATCCAGTTTAAAGGTCGAGGCAGAACAAAGAATGTA 499
|||||||||||||||||| | ||||| || ||||||||||||||||||||||||||||
Sbjct 383 GTTGGTTCAGTTTGTGTCTCTGATATACAACTTAAAGGTCGAGGCAGAACAAAGAATGTT 442
Query 500 TGGGAATCTCCAAAGGGTTGTCTTATGTATTCTTTTAC-TCTAGAAATGGAAGATGGTCG 558
|||||||||||||| ||||||||||||||||| ||||| | |||||||||||||||||||
Sbjct 443 TGGGAATCTCCAAAAGGTTGTCTTATGTATTCGTTTACAT-TAGAAATGGAAGATGGTCG 501
Query 559 AATCGTGCCGTTGATACAGTATGTGGTATCTCTTGCTGTAACTGAGGCAGTGAAAGATGT 618
| | ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 502 AGTAGTGCCTTTGATACAGTATGTGGTGTCTCTTGCTGTTACTGAGGCAGTGAAAGATGT 561
Query 619 TTGTGACAAGAAGGGTTTGCCGTACATTGACGTTAAAATTAAGTGGCCAAATGATCTCTA 678
||||||||||||||||||| |||| | ||| |||||||| ||||||||||||||||| ||
Sbjct 562 TTGTGACAAGAAGGGTTTGTCGTATAATGATGTTAAAATAAAGTGGCCAAATGATCTATA 621
Query 679 CTTGAATGGTCTTAAGGTTGGAGGCATTTTGTGTACCTCTACATATAGATCAAAGAAGTT 738
||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 622 CTTGAATGGCCTTAAGATTGGAGGCATTTTGTGTACCTCTACATATAGATCAAGGAAGTT 681
Query 739 CCATGTCAGTGTTGGTGTGGGGTTGAATGTGGACAACGAGCAACCGACGACGTGTTTAAA 798
|| |||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 682 CCTTGTCAGTGTTGGTGTGGGATTGAATGTGGACAACGAGCAACCGACCACGTGCTTAAA 741
Query 799 TGCAGTACTAAAAGGCATGT-CTCCTGAATCAACCCTACTTAAAAGAGAGGAAATCCTTG 857
||| |||||||||| | | | | ||| ||||| ||||||||||||||| ||||| ||||
Sbjct 742 TGCGGTACTAAAAGACGTTTGC-CCTCCATCAAACCTACTTAAAAGAGAAGAAATTCTTG 800
Query 858 GTGCCTTCTTTCATAAATTTGAAAAATTCTTTGATCTATTCATGGACCAAGGCTTTAAAT 917
||||||||||| | || |||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 801 GTGCCTTCTTTAAGAAGTTTGAAAATTTCTTTGATCTATTCATGGAACAAGGTTTTAAAT 860
Query 918 CTCTGGAGGAGCTTTACTACAGAACATGG-TTACACAGT-GAGCAAAGAGTGATTGTTGA 975
|||| |||||||||||||| || |||||| || |||||| || ||||||||||||| |||
Sbjct 861 CTCTTGAGGAGCTTTACTATAGGACATGGCTT-CACAGTGGA-CAAAGAGTGATTGCTGA 918
Query 976 AGAAAAAGGA-GAGGACCAAGTTGTTCAAAATGTTGTGACTATCCAGGGTTTGACATCTT 1034
||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 919 AGAAAAA-AACGAGGACCAAGTTGTTCAAAATGTTGTGACTATCCAGGGTTTGACTTCTT 977
Query 1035 CAGGATATTTACTGGCTATTGGAGATGACAATCAAATGTATGAGCTTCACCCTGATGGCA 1094
| |||||||| || |||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 978 CGGGATATTTGCTAGCTATTGGAGATGACAATGTAATGTATGAGCTTCATCCTGATGGCA 1037
Query 1095 ATAGTTTCGACTTTTTCAAAGGTCTGGTTCGAAGAAAAATATGATCCAAAGA 1146
||||||| || ||||||||||| ||||| ||||||||| ||||| ||| |||
Sbjct 1038 ATAGTTTTGATTTTTTCAAAGGGCTGGTCCGAAGAAAACTATGAACCAGAGA 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63905293785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5