BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481426
Length=1625
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25737.1 | Symbols: | Sulfite exporter TauE/SafE family pro... 2361 0.0
> AT2G25737.1 | Symbols: | Sulfite exporter TauE/SafE family protein
| chr2:10976936-10979900 FORWARD LENGTH=1892
Length=1892
Score = 2361 bits (1278), Expect = 0.0
Identities = 1463/1550 (94%), Gaps = 21/1550 (1%)
Strand=Plus/Plus
Query 79 ttcttcttcGTAAACAATGGCGAAATTGAGATCGAAATGGTTAGGTTTAAGATCTGTAAT 138
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 223 TTCTTCTTCGTATACAATGACGAAATTGAGATCGAAATGGTTAGGTTTAAGATCTGTAAC 282
Query 139 CATGGTT-TTAATCAATTTCTCTCTAGCTTTTGCTTTCGTTTCCGCTGAGAGAAGAATCT 197
||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 CAT-CTTCTTAATCAATTTCTCTCTAGCTTTTGCTTTCGTTTCCGCTGAGAGAAG----- 336
Query 198 TCAAAGGAAAATCTCTGAGGTTAAATTCAGATGAAACGCGGGAAAATGAATCAAGTTTCT 257
|||||||||||||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct 337 ----AGGAAAATCTCTGAGGTTAAGTACAGACGAAACGCGGGAAAATGAATCAAGTTTCT 392
Query 258 TCCTTAAAGCTGTCAATTTTCTATGGGAATCTGATCAAATTGGTTATCGTCATGTTTGGC 317
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 393 TCCTTAAAGCTATCAATTTTCTATGGGAATCTGATCAAATAGGTTATCGTCATGTTTGGC 452
Query 318 CTGAATTTGAGTTTAATTGGCAAATTGTTTTGGGAACTCTTGTTGGATTCTTTGGAGCTG 377
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 453 CTGAATTTGAGTTTAATTGGCAAATTGTATTGGGAACACTTGTTGGATTCTTTGGAGCTG 512
Query 378 CCTTTGGTAGTGTTGGAGGTGTTGGTGGTGGTGGCATTTTTGTACCTATGCTTAGTTTGA 437
| ||||||||||| || ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 513 CGTTTGGTAGTGTAGGTGGTGTTGGTGGTGGTGGGATTTTCGTACCTATGCTTAGTTTGA 572
Query 438 TTATTGGGTTTGATCCTAAATCAGCTACAGCTATTTCAAAATGTATGATTATGGGTGCTT 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 TTATTGGGTTTGATCCTAAATCAGCTACAGCTATTTCAAAATGTATGATTATGGGTGCTT 632
Query 498 CTGTGTCAACTGTCTATTACAATCTTAGATTGAGGCATCCAACACTTGATATGCCAATCA 557
||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 633 CTGTGTCCACTGTGTATTACAATCTTAGATTGAGGCATCCAACACTTGACATGCCTATCA 692
Query 558 TTGATTATGATCTCGCGTTGCTGATCCAGCCTATGCTTATGCTTGGGATTAGTATTGGTG 617
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 693 TTGATTATGATCTCGCTTTACTGATCCAGCCTATGCTTATGCTTGGGATTAGTATTGGTG 752
Query 618 TTGCTTTTAATGTTATTTTTCCGGATTGGTTGGTTACAGTTCTACTCATCATCCTCTTTC 677
||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 753 TTGCTTTTAATGTGATTTTTCCAGATTGGTTGGTTACAGTTCTACTCATCGTCCTCTTTC 812
Query 678 TAGGCACATCAACAAAGGCGTTTTTGAAGGGTTCTGAGACTTGGAACAAGGAAACTATAG 737
| ||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 813 TTGGCACGTCAACAAAGGCGTTCTTGAAGGGTTCTGAGACTTGGAACAAGGAGACTATAG 872
Query 738 AGAAAAAGGAGGCTGCTAAGCGTTTAGAGTCAAATGGTGTATCTGGGGCAGAAGTGGAAT 797
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 873 AGAAAAAGGAGGCTGCTAAACGTTTAGAGTCAAATGGTGTATCTGGCACAGAAGTGGAAT 932
Query 798 ACGTGCCTCTTCCCGCAGCCCCGAGCACGAACCCTGGAAACAAAAAGAAAGAAGAAGTAA 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 ACGTGCCTCTTCCCGCAGCCCCGAGCACGAACCCTGGAAACAAAAAGAAAGAAGAAGTAA 992
Query 858 GTATTATTGAAAATGTATATTGGAAGGAACTGGGACTTCTCGTGTTTGTCTGGGTTGTGT 917
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 993 GTATTATTGAAAATGTATACTGGAAGGAACTGGGACTTCTCGTGTTTGTCTGGATTGTGT 1052
Query 918 TCCTGGCACTGCAGATATCCAAGCAAAATCTGGCTAATTGTTCAGTAGCATATTGGGTCA 977
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 TCCTGGCGCTGCAGATATCCAAGCAAAATCTGGCTAATTGTTCAGTAGCATATTGGGTCA 1112
Query 978 TAAATCTGTTACAGATTCCGGTTGCAGTTGGTGTATCAGGCTATGAAGCAGTAGCTTTGT 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 TAAATCTGTTACAGATTCCGGTTGCAGTTGGTGTATCAGGCTATGAAGCAGTAGCTTTGT 1172
Query 1038 ACCAGGGTAGAAGAATCATTGCATCTAAAGGG-CAAGGAGACTCGAATTTCACCGTTGGT 1096
|||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||
Sbjct 1173 ACCAGGGTAGAAGAATCATTGCGTCTAA-GGGACAAGGAGACTCGAATTTCACCGTTGGT 1231
Query 1097 CAGCTAGTTATGTACTGTACATTTGGTATATTGGCAGGCATAGTCGGTGGTTTACTTGGT 1156
||||| |||||||| ||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct 1232 CAGCTTGTTATGTATTGTACATTTGGCATAATAGCAGGCATAGTCGGTGGTTTACTTGGT 1291
Query 1157 TTAGGCGGAGGTTTCATCATGGGTCCATTGTTCTTGGAGCTCGGTGTCCCGCCACAGGTT 1216
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1292 TTAGGCGGAGGTTTCATCATGGGTCCATTGTTCTTGGAGCTCGGTGTCCCACCACAGGTC 1351
Query 1217 TCAAGTGCCACAGCCACTTTTGCAATGACTTTCTCTTCATCAATGTCTGTTGTAGAATAC 1276
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1352 TCAAGTGCCACAGCCACTTTTGCAATGACTTTCTCATCATCCATGTCTGTTGTAGAATAC 1411
Query 1277 TATCTTCTCAAACGATTCCCTGTTCCATATGCTCTGTACCTTGTTGGAGTGGCAACAATT 1336
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1412 TATCTTCTCAAACGATTCCCTGTTCCATATGCTTTGTACCTTGTGGGAGTGGCAACAATT 1471
Query 1337 GCAGCTTTTGTAGGACAGCATGTAGTTAGAAGGCTCATTGCAGCCCTCGGCCGGGCATCT 1396
||||||| || |||||||||||||| |||||||| || |||||| ||||||| ||||||
Sbjct 1472 GCAGCTTGGGTTGGACAGCATGTAGTCAGAAGGCTAATCGCAGCCATCGGCCGCGCATCT 1531
Query 1397 CTCATAATCTTCATCCTCGCGTCCATGATTTTTATCAGTGCGATATCGCTTGGTGGCGTG 1456
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1532 CTCATCATCTTCATCCTCGCGTCCATGATCTTTATCAGTGCGATATCGCTTGGTGGCGTG 1591
Query 1457 GGAATAGTGAACATGATCGGCAAAATCCAACGGCACGAGTACATGGGATTCGAAAACCTC 1516
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 1592 GGAATAGTGAATATGATCGGCAAAATCCAACGGCATGAGTACATGGGTTTCGAGAACCTT 1651
Query 1517 TGCAAGTACGGTGGCTGACGTTGTACTCAGCATGTAACTTGTTAATTAAGTGTTAA-CTT 1575
||||||||||||||||||||||||||| |||||||| |||||||| ||||||| |||
Sbjct 1652 TGCAAGTACGGTGGCTGACGTTGTACTTAGCATGTAGCTTGTTAA----GTGTTAAACTT 1707
Query 1576 ATAAAGCTTCATTTTTGATGGCAAGACTACTTATGGTCTATTGATTGTGT 1625
||||||||||||| |||||||||||||| | ||||||| ||||||||||
Sbjct 1708 ATAAAGCTTCATTCTTGATGGCAAGACT--T-ATGGTCTTTTGATTGTGT 1754
Score = 137 bits (74), Expect = 3e-31
Identities = 83/87 (95%), Gaps = 1/87 (1%)
Strand=Plus/Plus
Query 1 CCTGTCGTGTGAATCCTGATCTCGCTTTAGATCGTGGAAAGCGTTCGACACATTTCCCCT 60
|||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||| |
Sbjct 90 CCTGTCGTGTGAATCCTGATCTCGCTTTAGATTGTGG-AAGCCTTCGACACATTTCCCAT 148
Query 61 TTTGAATTTGtcttcttcttcttcttc 87
|||||||||||||||||||||||||||
Sbjct 149 TTTGAATTTGTCTTCTTCTTCTTCTTC 175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80270671455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5