BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481427
Length=1970
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25740.1 | Symbols: | ATP-dependent protease La (LON) domai... 2992 0.0
> AT2G25740.1 | Symbols: | ATP-dependent protease La (LON) domain
protein | chr2:10980122-10983945 FORWARD LENGTH=2010
Length=2010
Score = 2992 bits (1620), Expect = 0.0
Identities = 1872/1990 (94%), Gaps = 32/1990 (2%)
Strand=Plus/Plus
Query 1 GAGGTGGCGAAAGGAGACTCTATCTATTGGCGGGTAAACGAAAAACTCGAGAGAAGAAAA 60
|||||||||||||| |||||| |||| ||||||||||||| |||||| ||| || |||
Sbjct 1 GAGGTGGCGAAAGGGGACTCTCTCTACTGGCGGGTAAACG--AAACTC--GAG-AG-AAA 54
Query 61 TGGACGACGAGAGGATTCGTgagagagagagaCTTCAGATCGAGCAGATTCGTGAGCTTG 120
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 55 TGGACGACGAGAGGATTCGAGAGCGAGAGAGACTTCAGATCGAGCAGATTCGTGAGCTTG 114
Query 121 ATTTCGAAGAATTACAAGTCGAAGAAGTCGATGACCTTCACGATTCCGATTCCGATG--- 177
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 ATTTCGAGGAATTACAAGTCGAAGAAGTCGATGACCTTCACGATTCCGATTCCGATGATA 174
Query 178 ATAATGATCATCTCTCTTCATTTCCCTTCTCTTCCCACGCTCAAGCTTCTGGTAACCTTG 237
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 175 ATAATGATGATCTCTCTTCATTTCCTTTCTCTTCCCACGCTCAAGCTTCTGGTAACCTCG 234
Query 238 GTGATGATGAATTTATTTTCAACCCAGCTTTGGCTTCTTTACATATGTATCTTGGTGAGG 297
||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 235 GTGATGATGAACTTATGTTCAACCCAGCTTTGGCTTCTTTACATATGTATCTTGGCGAGG 294
Query 298 TTGAGGACACTCAAAACAGAATTGCTTTTGTGGATGGAGGCACAGTTTTGAAAATCCCGC 357
|||| ||||||||||||||| || |||||||||||||||| || || ||||| |||||||
Sbjct 295 TTGAAGACACTCAAAACAGAGTTTCTTTTGTGGATGGAGGAACGGTATTGAAGATCCCGC 354
Query 358 TTTTCTATCTTGAAGGAGTGGTTCTATTTCCTGAGGCAACACTACCCCTTAGAATCGTTC 417
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 355 TTTTCTATCTTGAAGGAGTGGTTCTATTTCCTGAGGCAACACTCCCCCTTAGAATCATTC 414
Query 418 AGCCTAGTTTCTTGGCTGCTGTTGAGAGAGCTTTGAACCAAGCTAACGCTCCATCTACCA 477
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 415 AGCCTAGTTTCTTGGCTGCTGTTGAGAGAGCTTTGAACCAAGCTAACGCTCCTTCTACGA 474
Query 478 TAGGTGTGATTCGTGTTTACAGAGAAGGGGCTCAGTTCAAGTATGCCAGTGTGGGGACAA 537
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 475 TAGGTGTGATTCGTGTTTACAGAGAAGGGGCTCAGTTTAAGTATGCCAGTGTGGGGACAA 534
Query 538 CCGCCGAGATAAGACAATACCGTCGACTTGGTGATGGTTCATTCAACATTATTACTCGTG 597
|||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 535 CCGCAGAGATACGACAATACCGTCGACTTGGTGATGGTTCATTCAATGTTATTACTCGTG 594
Query 598 GACAACAACGGTTCCGTTTAAAGCGTCGCTGGACTGACGTTGAAGGATTTCCTTGCGGAG 657
|||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 595 GACAACAACGTTTCCGTTTAAAGCATCGCTGGACTGACGTTGAAGGATTTACTTGCGGAG 654
Query 658 AGGTTCAAATTGTTGATGAAGATGTGCCCTTGAGGACTCCCAGGGACGCGTTTGGGAAAC 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 655 AGGTTCAAATTGTTGATGAAGATGTGCCCTTGAGGACTCCCAGGGACGCGTTTGGAAAAC 714
Query 718 TGGTACCGTTAAGCAAGTTGCGAGATCGCTACCCCTCGAGTACAGTGTCTTTATCTACAC 777
|||||||| ||||||||||||||| |||||| |||| | |||||| |||||||||||||
Sbjct 715 TGGTACCGCTAAGCAAGTTGCGAGGTCGCTATCCCTTGGGTACAGCATCTTTATCTACAC 774
Query 778 CTCTTAGAGAT-T----------T-GGAAGCAAATTCTGAAGAAAGTTTTGAAAGTGCTC 825
||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 775 CTCTTAGAGATATGGACGCACAGTCTGAAGCAAATTCTGAAGAAAGTTTTGAAAGTGCTC 834
Query 826 TTTCTCCGTCAGAAAAAAGACTTCATTATTCAGTAGTTGACTCAATATTTTGTAACTCAA 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TTTCTCCGTCAGAAAAAAGACTTCATTATTCAGTAGTTGACTCAATATTTTGTAACTCAA 894
Query 886 CAAGTAGTGATGATGATCAAGTAGTCAGCACCTCTACAATCCAATCTAGTGGGTCTAATC 945
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 895 CAAGTAGTGATGATGATCAAGTAGTCAGCACCTCTACAGTCCAATCTAGTGGGTCTAATC 954
Query 946 CATACAGCTCGAGGTCCATTGGATGTTTAGCTTCTAGCCATGACGACGAAAATGAAGAGG 1005
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 955 CATACAGCTTGAGGTCCATTGGATGTTTAGCTTCTAGCCATGACAACGAAAATGAAGACG 1014
Query 1006 AGCAATCGACAATTGGCAAGACTCCTATCTCACAAAAGAAATATCAGAAGCAAAATAGGC 1065
|||||||| ||||||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct 1015 AGCAATCGGCAATTGGCAAGACTCCTGTTTCACAAGAGAAATATCAGAAGCAAAATAGGC 1074
Query 1066 TGGCAAGTTTCCGGGAAAGTACTGATCTAAGCCGATTCCGTATGACCCCAAGAGCATTTT 1125
|||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1075 TGGCAAGTTTCCGGCAAAATACTGATCTAAGCCGATTCCGTATGACGCCAAGAGCATTTT 1134
Query 1126 GGCCATTCTGGGCGTATAGGATGTACGACTCATATTATCTTGCTCAAAGAGCAG-CTGAT 1184
|||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||
Sbjct 1135 GGCCATTCTGGGCGTATAGGATGTTTGACTCATATTATCTTGCTCAAAGAGCAGTC-GAT 1193
Query 1185 CTGTGGAAGCAAATAGTTGCGGTTCCAAACATGGAGGCTTTTGTGAATACACCAAATATT 1244
||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||
Sbjct 1194 CTGTGGAAGCAAATAGTTGGGGTTCCAAACATGGAGGCTTTTGTGAATAAACCAGATATT 1253
Query 1245 CTATCCTTTTCCATTGCTAGTAAAATTCCTGTGTCTGAGTCAATTAGACAAGAGCTCTTG 1304
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1254 CTATCCTTTTCCATTGCGAGTAAAATTCCCGTGTCTGAGTCAATTAGACAAGAGCTCTTG 1313
Query 1305 GAGCTGGATGGAGTCTCCTATAGATTGCAGCGAGAAATTGAATTGCTTGAAAGTTTTGAC 1364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 GAGCTGGATGGAGTCTCCTATAGATTGCAGCGAGAAATTGAATTGCTTGAAAGTTTTGAT 1373
Query 1365 CGTGTTCGTTGTATACACTGTCAGACTGTCATAGCAAGAAGAAAAGACATGTTGGTTATG 1424
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 CGTGTTCGATGTATACACTGTCAGACTGTCATAGCAAGAAGAAAAGACATGTTGGTTATG 1433
Query 1425 TCTAATGAAGGTCCTCTTGGTGCCTACGTAAACCCACATGGCTATGTGCACGAGATAATG 1484
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1434 TCTAATGAAGGTCCTCTTGGTGCCTACGTAAACCCACATGGCTATGTCCACGAGATAATG 1493
Query 1485 ACCTTTTACAAAGCAAATGACATAGCGATTAGAGGTAGACCTGTTAAAAAGGACAGCTGG 1544
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1494 ACCTTTTACAAAGCAAATGACATAGCGCTTAGAGGTAGACCTGTTAAAAAGGACAGCTGG 1553
Query 1545 TTTCCTGGGTATGCATGGACAATTGCAAACTGTGCGACGTGTGAAACCCAACTTGGTTGG 1604
|||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1554 TTTCCTGGGTATGCTTGGACAATTGCAAACTGTGCGACGTGCGAAACCCAGCTTGGTTGG 1613
Query 1605 CTTTTCACAGCGACAAATAAGAAGTTGAAGCCATCATCTTTCTGGGCAGTTCGGGGCTCA 1664
| ||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 1614 CATTTCACAGCGACAAACAAGAAGTTGAAGCCATCGTCTTTTTGGGCAGTTCGTGGCTCA 1673
Query 1665 CAGGTCGCAGATGACATGCGCTGAAACAGCAATTAAA-CCAGGTCTCACTTATGGATCAA 1723
||||| ||||||||||||||||||||||||| ||||| |||||||||||| | |||||||
Sbjct 1674 CAGGTTGCAGATGACATGCGCTGAAACAGCA-TTAAAACCAGGTCTCACTCACGGATCAA 1732
Query 1724 TTCGCGCTT-CAATACCAAATTACCATAGAAAGGTTTCTACCTTTAACTTCCCCACTATG 1782
||||| ||| |||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1733 TTCGC-CTTTCAATACCAAATTACCATAGAAAGGTTTCTAGCTTAAACTTCCCCACTATG 1791
Query 1783 CTGAATATTACTAAATAGCTTGTGAAAGCGA-AAAGCTGACTAGAGTATAGAATTCTAAA 1841
||||||||| | ||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1792 CTGAATATTGCAAAATAGCTTGTGAAAGC-ACAAAGCTGACTAGAGTATAGAATTCTAAA 1850
Query 1842 GTAATATGCATACATACATTATATATATACAGCATAGATGTGATGGAAGTACCCTAGGTA 1901
|||||||||||||||||| ||||||||| ||||||| |||||||||| | ||| ||| ||
Sbjct 1851 GTAATATGCATACATACAATATATATATCCAGCATA-ATGTGATGGAGGAACCATAGTTA 1909
Query 1902 GGAA-AACACGGGAATCTTGAATCTCTTATGGGTTTTGTGTAGACCTAAATGAATTGAAC 1960
||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1910 GGATTAA-ACGGGAATCTTGAATCTCTTATGGGTTTTGTGTAGACCTAAATGAATTTAAC 1968
Query 1961 TCTCACTCTC 1970
||||| ||||
Sbjct 1969 TCTCAGTCTC 1978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97589859480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5