BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481429
Length=2408
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25760.2 | Symbols: | Protein kinase family protein | chr2:... 3613 0.0
> AT2G25760.2 | Symbols: | Protein kinase family protein | chr2:10984808-10988924
REVERSE LENGTH=2613
Length=2613
Score = 3613 bits (1956), Expect = 0.0
Identities = 2262/2402 (94%), Gaps = 52/2402 (2%)
Strand=Plus/Plus
Query 1 CTTTAGATTCTTCGATTGCCAAGTCTCATAAATCCCCAAAATCTCTCTACCCATTTGGAT 60
|||| |||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 76 CTTTGGATTCTTCAATTGCTTAGTCTCATAAATCCCCAAAATCTCTCCACCCAGTTGGAT 135
Query 61 TTGCAG--CTCTCAGATTCATC---TTCTTGA--TC----------TC--TTTCACGAAG 101
|||||| |||||||||||||| ||||||| || || ||||||||||
Sbjct 136 TTGCAGCTCTCTCAGATTCATCAGTTTCTTGATCTCTTTGTTATATTCAATTTCACGAAG 195
Query 102 ATTGTATCC--ATCAGATGGTTCTGGAAGCTTCTTTCTTTCCCAGTGAGTTCGGTCGTTC 159
||||||||| | ||||||| |||||||||||||||||||| |||||| |||| ||||||
Sbjct 196 ATTGTATCCAGAGCAGATGGGTCTGGAAGCTTCTTTCTTTCTCAGTGATTTCGATCGTTC 255
Query 160 CATGGACCAGACGTACGATGCCTGAGCTGCGTAGCAACGCACGCAGAGATCGGGCTAATA 219
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 256 CATGGACCAGACGTACGATGCCTGAGCTGCGTAGCAACGCACGCAGAGATCGGG---ATA 312
Query 220 AGAACCCGAAGCCGAACCAGAAGAACCCAATTGCTTTGAAACAATCACCAGTTAGGAGAA 279
|||| ||| ||| | || |||||||||||||||||||||||||||| ||||||||||
Sbjct 313 AGAA---GAACCCG-A--AGCAGAACCCAATTGCTTTGAAACAATCACCTGTTAGGAGAA 366
Query 280 ACCCGAGGCGGCA---GAAGAAGAAAGTGGTGGTGAAGG-AGACGATCGTAGAAGCAGAA 335
| ||||||||||| ||||||||||||||||||||||| || ||||||| | ||| |||
Sbjct 367 ATCCGAGGCGGCAGCTGAAGAAGAAAGTGGTGGTGAAGGAAG-CGATCGTTGCAGCTGAA 425
Query 336 AAGACGACGCCTTTGGTGAAAGAGGAAG--G-AGAGATTAGGGTTTCGAGAGAAGATAAG 392
|||||||||||||||||||||||||||| | | |||||||||||||||| |||||||||
Sbjct 426 AAGACGACGCCTTTGGTGAAAGAGGAAGAAGAACAGATTAGGGTTTCGAGTGAAGATAAG 485
Query 393 AAGATGGATGAAAACGACAGTGGTGGTCAAGCAGCACCAGTGCCTGATGATGAAGGAAAC 452
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 486 AAGATGGATGAGAACGACAGTGGTGGTCAAGCAGCTCCAGTGCCTGATGATGAAGGAAAC 545
Query 453 ACTCCTCCACTTCCTGAAAAGGTTTC-GGTTGGTGGTTCCCCCATGTACAAGTTAGATAG 511
||||||||||||||||||||| ||| ||||||| ||| ||||||||||||||||||||
Sbjct 546 GCTCCTCCACTTCCTGAAAAGG-TTCAGGTTGGTAATTCACCCATGTACAAGTTAGATAG 604
Query 512 AAAGCTAGGGAAAGGAGGTTTTGGACAAGTTTATGTTGGTCGAAAGATGGGCACGAGCAC 571
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 605 AAAGCTAGGCAAAGGTGGTTTTGGACAAGTTTATGTTGGTCGAAAGATGGGCACGAGTAC 664
Query 572 TTCTAATGCTAGATTTGGCCCCGGAGCTTTGGAGGTGGCTTTGAAGTTTGAGCATAGAAC 631
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 665 TTCTAATGCTAGATTTGGCCCGGGAGCTTTGGAGGTGGCTTTGAAGTTTGAGCATAGAAC 724
Query 632 CAGCAAAGGGTGTAACTATGGGCCACCGTATGAGTGGCAAGTTTACAATGCACTTGGTGG 691
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 CAGCAAAGGATGTAACTATGGGCCACCGTATGAGTGGCAAGTTTACAATGCACTTGGTGG 784
Query 692 CAGTCATGGTGTGCCACGAGTTCATTTTAAAGGTCGGCAAGGCGATTTTTACGTGATGGT 751
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 785 CAGTCATGGTGTGCCACGAGTTCATTTTAAGGGTCGGCAGGGCGATTTTTACGTGATGGT 844
Query 752 TATGGATATTCTTGGGCCTAGCTTATGGGATGTTTGGAATAGTACCACTCAAGCGATGTC 811
||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 845 TATGGATATCCTTGGGCCTAGCTTATGGGATGTTTGGAATAGTACCACCCAGGCGATGTC 904
Query 812 AACAGAGATGGTTGCGTGCATTGCGATTGAGGCAATATCCATATTGGAAAAGATGCATTC 871
||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 905 AACAGAGATGGTTGCATGCATTGCAATTGAGGCAATATCCATATTAGAAAAGATGCATTC 964
Query 872 TAGGGGATATGTGCATGGCGATGTAAAACCAGAGAATTTTCTGCTTGGGCCTCCCGGAAC 931
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 965 TAGAGGATATGTGCATGGCGATGTAAAACCAGAGAATTTTCTGCTTGGGCCTCCTGGAAC 1024
Query 932 TCCTGAAGAGAAAAAACTTTTCCTTGTCGACCTCGGCTTAGCAACCAAATGGCGTGATAC 991
||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||
Sbjct 1025 TCCTGAAGAGAAAAAACTTTTCCTTGTAGACCTCGGCTTAGCATCCAAATGGCGAGATAC 1084
Query 992 TGCTACTGGACTTCATGTTGAATATGACCAGCGTCCTGATGTTTTTAGAGGAACAGTACG 1051
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 TGCAACTGGACTACATGTTGAATATGACCAGCGTCCTGATGTTTTTAGAGGAACAGTACG 1144
Query 1052 TTATGCTAGTGTACATGCTCATCTTGGCAGAACTTGTAGTCGGAGGGATGACCTGGAATC 1111
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1145 TTATGCTAGTGTACATGCTCATCTTGGCAGAACTTGCAGTCGGAGGGATGACCTGGAATC 1204
Query 1112 TCTTGCTTACACTCTTGTTTTCCTTCTTCGAGGCCGGCTTCCATGGCAAGGGTACCA--- 1168
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 TCTTGCTTACACTCTTGTTTTCCTTCTTCGAGGCCGGCTTCCATGGCAAGGGTACCAGGT 1264
Query 1169 --GGG--A--GAGAACAAAGGTTTCCTTGTTTGCAAGAAGAAGATGGCTACTTCCCCAGA 1222
||| | | ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1265 TGGGGACACTAAAAACAAAGGTTTCCTTGTTTGCAAGAAGAAGATGGCCACTTCCCCAGA 1324
Query 1223 AACTCTTTGCTGCTTCTGCCCCCAACCTTTTCGTCAATTTGTTGAGCATGTTGTCAACTT 1282
|||||||||||||||||| ||||||||||||||||| ||||| ||| |||| ||||| ||
Sbjct 1325 AACTCTTTGCTGCTTCTGTCCCCAACCTTTTCGTCAGTTTGTCGAGTATGTGGTCAATTT 1384
Query 1283 GAAGTTTGATGAGGAGCCTGACTATGCTAAATATATCTCCCTTTTTGATGGAATAGTCGG 1342
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1385 GAAGTTTGATGAGGAGCCTGATTATGCTAAATATGTCTCCCTTTTTGATGGAATAGTCGG 1444
Query 1343 CCCAAACCCAGATATTAGGCCAATAAATACTGAGGGTGCACAGAAGCTCATACATCAAGT 1402
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 CCCAAACCCAGACATTAGGCCAATAAATACTGAGGGTGCACAGAAGCTCATACATCAAGT 1504
Query 1403 GGGTCAAAAGAGGGGGAGGCTGACAATGGACGAGGAGGACGAACAACCAACAAAGAAGAT 1462
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1505 GGGTCAAAAGAGGGGGAGGCTGACAATGGACGAGGAGGATGAACAACCAACAAAGAAGAT 1564
Query 1463 CAGATTGGGCATGCCAGCAACACAATGGATCAGCATTTACAGTGCTCACAGACCAATGAA 1522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1565 CAGATTGGGCATGCCAGCAACACAATGGATCAGCATTTACAGTGCTCACAGACCAATGAA 1624
Query 1523 ACAACGATATCATTATAATGTTACTGATACAAGGCTTGCACAGCACATTGAAAAAGGAAC 1582
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1625 ACAACGATATCATTATAATGTTACTGATACAAGGCTTGCACAACACATTGAAAAAGGAAA 1684
Query 1583 TGAGGATGGGTTATTTATCAGCAGTGTGGCTTCTTGTGCGGATCTCTGGGCTTTGATCAT 1642
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1685 TGAGGATGGGTTATTTATCAGCAGTGTGGCTTCTTGCACGGATCTCTGGGCTTTGATCAT 1744
Query 1643 GGATGCAGGAACTGGCTTTACGGATCAAGTTTACCAGCTATCACCAAGCTTTCTCCACAA 1702
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1745 GGATGCAGGAAGTGGCTTTACGGATCAAGTTTACCAGTTATCACCAAGCTTTCTCCACAA 1804
Query 1703 GGAATGGATTATGGAACAATGGGAAAAGAATTACTATATTACAGCAGTAGCAGGAGCAAA 1762
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1805 GGAATGGATTATGGAACAATGGGAAAAGAATTACTATATTACAGCAGTGGCAGGAGCAAA 1864
Query 1763 TAATGGGAGCTCATTCGTGGTTATGTCAAAAGGGACCCAGTATTTACAACAATCCTACAA 1822
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1865 TAGTGGGAACTCATTCGTGGTTATGTCAAAAGGGACCCAGTATTTACAACAATCCTACAA 1924
Query 1823 AGTCAGTGATTCTTTTCCCTTCAAGTGGATAAATAAAAAGTGGAGGGAAGGATTTTATGT 1882
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1925 AGTCAGTGATTCTTTTCCCTTCAAGTGGATAAATAAAAAGTGGAGGGAAGGGTTTTATGT 1984
Query 1883 TACATCAATGGCAACTGCTGGAAGCAAATGGGGAATTGTAATGTCTCGTGGAGCTAATTT 1942
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1985 TACATCAATGGCAACTGCTGGAAGCAAATGGGGAATTGTAATGTCTCGTGGGGCTTCTTT 2044
Query 1943 TTCTGACCAGGTTGTAGAACTAGATTTTCTATACCCTAGTGAAGGTATACATCGTCGATG 2002
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2045 TTCTGATCAGGTTATAGAACTAGATTTTCTATACCCTAGTGAAGGTATACATCGTCGATG 2104
Query 2003 GGAAAATGGCTACCGAATTACATCAGTTGCTGCAACTTGGGATCAGGCTGCCTTTGTTCT 2062
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2105 GGAAAATGGCTACAGAATTACATCAGTTGCTGCAACTTGGGATCAGGCTGCCTTTGTTCT 2164
Query 2063 TAGTGTGCCAAGAAGGAAGCTTACTGATGAGACACAGGAGACTCTTAGAACCTCTGCATT 2122
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 2165 TAGTGTGCCAAGAAGGAAGCTTACCGATGAGACACAGGAGACTCTTAGAACCTCTGCTTT 2224
Query 2123 TCCTAGTAATCATGTCAAGGAAAAATGGGGCAAGAATCTTTACATTGCATCGATTTGCTA 2182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2225 TCCTAGTAATCATGTCAAGGAAAAATGGGGCAAGAATCTTTACATTGCATCGATTTGTTA 2284
Query 2183 TGGTCGAACTGTGTCATGAAGTTCTAG-TTTTT-GTTAGGATGCAACTCAATTTAGCTTT 2240
|||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 2285 TGGTCGAACTGTGTCATGAAGTTCTAAATTTTTTGTTAGGATGCATCTCAATTTAGCTTT 2344
Query 2241 ACCATATATCGGCTAAGAAAGAAGAATCTTTGTGATCAGTGATGCTATGTGCTTAGGGGA 2300
|||||||||| ||||||||| ||||||| ||||||||||||||| |||| |||||||| |
Sbjct 2345 ACCATATATCCGCTAAGAAAAAAGAATCGTTGTGATCAGTGATGGTATGGGCTTAGGG-A 2403
Query 2301 ACCTTTTAGCAAGGTTGAATGAATGTTTGCCAAACTTCACTGATGCTGTAATGTAGTGTA 2360
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 2404 ACCTTTTAGCAAGGTTGAATGAATGTTTGCCAAACTTCAGTGATGCTGCAATGTAGTGTA 2463
Query 2361 TC 2362
||
Sbjct 2464 TC 2465
Score = 82.4 bits (44), Expect = 2e-14
Identities = 46/47 (98%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 2362 CTTTTCAACTTGGATGACTTGTTTGATGAAAGAAGTTCAAATTTCTT 2408
||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2486 CTTTTCAACTTGGATGACTTGTTTGATGAAAGAAGTTAAAATTTCTT 2532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119577698190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5