BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481430
Length=485
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25780.1 | Symbols: | Protein of unknown function (DUF1677)... 660 0.0
> AT2G25780.1 | Symbols: | Protein of unknown function (DUF1677)
| chr2:10995141-10996024 FORWARD LENGTH=591
Length=591
Score = 660 bits (357), Expect = 0.0
Identities = 444/485 (92%), Gaps = 10/485 (2%)
Strand=Plus/Plus
Query 10 ATTCTTCGAAAGGCCTTCTCTGATGTTTCTTTGGAGAGAAAACGAAATATAAGCGAAAAA 69
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 44 ATTCTTCGAAAGGCCTTCTCTGATGTTTCCTTGGAGAGAAAACGAAATATAAGCCAAAAC 103
Query 70 GACGAGCAAGAACAAGACCGAGAGCTAGAAGTGAAGCAAGTGAAATGTGATTGTTGTGGT 129
||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||
Sbjct 104 GACGAGCAAGAACAAGAAGGAGAGGTAGAAGTGAACCAAGTGAAATGTGATTGTTGTGGT 163
Query 130 ATAGAAGAAGAATGTACTATGCAATACATAGACAAAGTTA-AAGACTTGTATTCAGGCAA 188
||||||||||||||||||||||||||||||| |||||| | || ||||||||||||||||
Sbjct 164 ATAGAAGAAGAATGTACTATGCAATACATAGCCAAAGTCAGAA-ACTTGTATTCAGGCAA 222
Query 189 TTGGGTTTGTGGTCTTTGTGCCGTAGTGGTCACTGAGAGATTTCGGAAAGATCCCCCTAC 248
|||||||||||||||||||| || ||| || ||||||||| ||||||||||||| || |
Sbjct 223 TTGGGTTTGTGGTCTTTGTGGCGAAGTAGTAACTGAGAGACTTCGGAAAGATCCTCCAAT 282
Query 249 AGCCACTGGGATACAAGAAGCCTTTGACTGGCACAAAGGAATTTGTGATGCCTTCAATTC 308
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 AGCCGCTGGGATACAAGAAGCCTTTGACTGGCACAAAGGAATTTGTGATGCCTTCAATTC 342
Query 309 TACTACAAGAGTGAACCCTAAACTCGATTTCGCACGGTCAATGAGAGAGATCGCTAAACG 368
||||||||| ||||||||||||||||| ||| || | || ||||||||||||||||||||
Sbjct 343 TACTACAAGGGTGAACCCTAAACTCGACTTCACAAGATCGATGAGAGAGATCGCTAAACG 402
Query 369 AAGCAGTCAGAATAGGATG-TC-C-GACTTTTCGTTAGGTTCCAAAATTGCTCGAACAAT 425
|||||||||||| |||||| | | ||||||||| |||| ||||||||||||||||||||
Sbjct 403 AAGCAGTCAGAACAGGATGATGTCAGACTTTTCGATAGGATCCAAAATTGCTCGAACAAT 462
Query 426 CAGTTGTGACCCAAGGCTCGAGACTTGA--AAT--T-ATGTAGACCCAAGCTCTAGTTAT 480
||||||||| |||||||||||||||||| ||| | ||||||||||||||| |||||||
Sbjct 463 CAGTTGTGATCCAAGGCTCGAGACTTGAGCAATAATGATGTAGACCCAAGCTGTAGTTAT 522
Query 481 TCTTA 485
| |||
Sbjct 523 TGTTA 527
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23107707620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5