BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481432
Length=3211
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25800.1 | Symbols: | Protein of unknown function (DUF810) ... 4909 0.0
> AT2G25800.1 | Symbols: | Protein of unknown function (DUF810)
| chr2:11005924-11009739 REVERSE LENGTH=3189
Length=3189
Score = 4909 bits (2658), Expect = 0.0
Identities = 3041/3220 (94%), Gaps = 50/3220 (2%)
Strand=Plus/Plus
Query 1 AATGGCTCATCTCTTCAGAGAGCTGTCTCTGGGTCACTCCAAGAGAGAGTCTACGCCGCC 60
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 11 AATGGCTCATCTCTTCAGGGAGCTGTCTCTGGGCCACTCCAAGAGAGAGTCTACGCCGCC 70
Query 61 GCCGCCGTCACAATCGGCGACTTCACGCTCTTCTTCAATGTCTTCCGATCTACCTCCATC 120
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 71 GCCGCCGTCACATTCGGCGACTTCACGTTCTTCTTCAATGTCTTCCGATCTACCTCCATC 130
Query 121 TCCACTCGGACAACTCGCTGTTCAACTTTCCGATTCCGATCTCCGTCTCACTGCTTACGA 180
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 131 ACCACTCGGACAACTCGCTGTCCAACTTTCCGATTCCGATCTCCGTCTCACTGCTTACGA 190
Query 181 GATCTTCGTCGCCGCATGTCGTAGCGCCACCGGAAAACCTCTCTCATCGGCTGTTTCAGT 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 191 GATCTTCGTCGCCGCATGTCGTAGCGCCACCGGTAAACCTCTCTCATCGGCTGTTTCAGT 250
Query 241 CGCTGTTTCGAATCCGGATTCTCCCAATGGCTCACCTGCTTCGCCAGCGATTCAGCGTTC 300
|||||||| ||||| |||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 251 CGCTGTTTTGAATCAGGATTCTCCCAATGGCTCTCCTGCTTCGCCGGCGATTCAGCGTTC 310
Query 301 TCTGACCTCAACCGCCGCTAGTAAGATGAAGAAGGCTTTGGGGTTGAGGTCGTCTTCTTC 360
|||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 311 TCTGACCTCAACCGCCGCTAGTAAAATGAAGAAAGCTTTGGGGTTAAGGTCGTCTTCTTC 370
Query 361 GCTTTCACCTGGATCTAATAAGAGTCCTGGTTCGGGTTCGGGTTCTGCTTCGGGTTCGAA 420
||||||||||||||||||||||| |||| | ||||||||||||||||| ||
Sbjct 371 GCTTTCACCTGGATCTAATAAGA------GTTC----T--GGTTCTGCTTCGGGTTCTAA 418
Query 421 TGGTAAGTCGAAGCGTCCTACTACTGTCGGTGAGCTTATGCGGATCCAAATGCGAGTATC 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TGGTAAGTCGAAACGTCCTACTACTGTCGGTGAGCTTATGCGGATCCAAATGCGAGTATC 478
Query 481 GGAGGCTGTTGATTCTCGTGTTCGTAGAGCTTTTCTTAGAATCGCTGCTAGTCAGGTTGG 540
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 479 GGAGGCTGTCGATTCTCGTGTTCGTAGAGCTTTTCTTAGAATCGCTGCTTCACAGGTTGG 538
Query 541 AAGGAAGATTGAGTCAGTGGTTCTTCCTTTAGAATTGTTACAGCAGCTAAAGTCTTCTGA 600
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 539 AAGGAAGATTGAGTCAGTAGTTCTTCCTTTAGAGTTGTTACAGCAGCTAAAGTCTTCTGA 598
Query 601 TTTTACGGATCAGCAAGAATATGATGCTTGGCTTAAGAGATCATTGAAGGTTCTTGAGGC 660
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 599 TTTTACGGATCAGCAAGAATATGATGCTTGGCTGAAGAGATCATTGAAGGTTCTTGAGGC 658
Query 661 TGGTCTTCTGTTGCATCCTCGTGTACCTCTTGATAAGACGAATAGTTCTCAGCGATTGCG 720
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 659 AGGTCTTTTGTTGCATCCTCGTGTACCTCTTGATAAGACGAATAGTTCTCAACGACTGCG 718
Query 721 TCAGATTATTCATGGTGCTTTAGA-CAGGCCTTTGGAGACTGGAAGGAACAATGAGCAAA 779
||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||
Sbjct 719 ACAGATTATTCATGGTGCTTTAGATC-GGCCTTTGGAGACTGGAAGGAATAATGAGCAAA 777
Query 780 TGCAAAGTCTTCGATCAGCGGTCATGTCTCTTGCAACTAGATCTGATGGGTCTTTCTCTG 839
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TGCAAAGTCTTAGATCAGCGGTCATGTCTCTTGCAACTAGATCTGATGGGTCTTTCTCTG 837
Query 840 ATTCCTGTCATTGGGCTGATGGATCTCCATTTAATCTCAGGCTCTATGAACTGCTTTTAG 899
|||| ||||| ||||||||||||||||| |||||||||||||| |||||| |||||||||
Sbjct 838 ATTCTTGTCACTGGGCTGATGGATCTCCGTTTAATCTCAGGCTTTATGAATTGCTTTTAG 897
Query 900 AAGCGTGTTTTGATTCTAATGACGCGACGTCCATGGTTGAGGAAGTTGATGACCTTATGG 959
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 898 AAGCGTGTTTTGATTCTAATGATGCGACGTCCATGGTTGAGGAAGTTGACGACCTAATGG 957
Query 960 AACACATAAAGAAGACGTGGGTAATTCTTGGAATCAACCAAATGCTTCATAACCTCTGTT 1019
|||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 958 AACATATAAAGAAGACGTGGGTAATTCTTGGAATCAATCAAATGCTGCATAACCTCTGTT 1017
Query 1020 TTACGTGGATTTTGTTTAGTCGCTATGTTGTTACTGGACAAGTTGAGATGGACCTGCTTC 1079
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1018 TTACGTGGCTTTTGTTTAGTCGTTATGTTGTTACTGGACAAGTTGAGATGGACCTGCTTC 1077
Query 1080 ATGCTTGTGATTCTCAACTGGCAGAAGTTGCTAAAGATGCAAAGACAACAAAGGATCCTG 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 ATGCTTGTGATTCTCAACTGGCAGAAGTTGCTAAAGATGCAAAGACAACAAAGGATCCTG 1137
Query 1140 AATACTCCCAAGTTTTAAGTTCTACACTGAGTGCTATATTAGGTTGGGCAGAGAAAAGGC 1199
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1138 AATACTCCCAGGTTTTAAGTTCTACACTGAGTGCTATATTAGGATGGGCAGAGAAAAGGC 1197
Query 1200 TCCTGGCATACCATGATACCTTTGACCGAGGTAATATTCATACCATGGAGGGAATTGTTT 1259
|||| ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1198 TCCTTGCATACCATGACACTTTTGACCGAGGAAATATTCATACCATGGAGGGAATTGTTT 1257
Query 1260 CTTTGGGTGTATCAGCAGCCAGGATATTAGTTGAAGATATATCTAACGAGTACCGTAGAA 1319
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CTTTGGGTGTATCAGCTGCCAGGATATTAGTTGAAGATATATCTAACGAGTACCGTAGAA 1317
Query 1320 GAAGGAAAGGAGAAGTTGATGTAGCTCGTACCAGGATTGAGACATACATCAGGTCCTCAC 1379
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1318 GAAGGAAAGGAGAAGTTGATGTAGCTCGTACCAGGATTGAGACGTACATCAGGTCCTCAC 1377
Query 1380 TACGAACTTCTTTTGCGCAGGCAAGTATTTGTATTAGAATGGAGAAAGCAGATTCAAGCC 1439
|||||||||||||| || || | | |||||||||||||||||||||||||
Sbjct 1378 TACGAACTTCTTTT--GC--GC----A---G----AGAATGGAGAAAGCAGATTCAAGCC 1422
Query 1440 GGAGAGCATCTAGAAACCAGAAAAATCCTCTTCCTGTTCTTGCCATCCTTGCTAAGGACA 1499
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1423 GGAGAGCATCTAGGAACCAGAAAAATCCTCTTCCTGTTCTAGCCATCCTTGCTAAGGACA 1482
Query 1500 TTGGTGAGCTAGCTGTTCAGGAAAAGCGGATGTTCAGTCCAATATTGAAGAGATGGCATC 1559
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 TTGGTGAGCTAGCTATTCAGGAAAAGCGGATGTTCAGTCCAATATTGAAGAGATGGCATC 1542
Query 1560 CATTTGCTGCAGGGGTTGCTGTGGCTACCCTCCACGTTTGTTATGGAAATGAGATTAAAC 1619
| ||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||||
Sbjct 1543 CGTTTGCTGCAGGGGTTGCTGTGGCGACCCTTCATGTTTGTTACGGAAATGAGATTAAAC 1602
Query 1620 AGTTTATATCCGGAATATCTGAATTGACACCCGATGCTGTCCAGATACTAAGAGCTGCAG 1679
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1603 AGTTTATAGCCGGAATATCTGAATTGACACCTGATGCTGTCCAGATACTAAGAGCTGCAG 1662
Query 1680 ATAAGCTAGAAAAGGATCTGGTTCAAATCGCAGTAGAGGATTCTGTTGACAGTGATGATG 1739
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1663 ATAAGCTAGAAAAGGATCTGGTGCAAATCGCAGTAGAGGATTCTGTTGACAGTGATGATG 1722
Query 1740 GTGGCAAAGCAATTATCCGTGAAATGCCTCCCTTCGAAGCTGAGACGGTTATTGCTAATT 1799
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1723 GTGGCAAAGCAATTATCCGTGAAATGCCTCCCTTCGAAGCTGAGACCGTAATTGCTAATT 1782
Query 1800 TGGTCAAAGACTGGATCAAGGCAAGAATAGACAGACTTAAGGAATGGGTTGACAGGAATT 1859
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1783 TGGTCAAAGACTGGATAAAGGCAAGAATAGACAGACTTAAGGAATGGGTTGACAGGAATT 1842
Query 1860 TGCAGCAAGAGGTTTGGAAACCTCTGGAGAACCAAGAAGGAGGATATGCACAATCTGCTG 1919
|||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||
Sbjct 1843 TGCAGCAAGAGGTTTGGAAACCCCTGGAGAACCTAGAAGGAGGATATGCACAGTCTGCTG 1902
Query 1920 CCGAAGTGTTGCGGATTACTGATGAAACTTTGGAAGCGTTTTTTCAGCTTCCCATACCCA 1979
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1903 CCGAAGTGTTGCGGATTACTGATGAAACTTTGGAAGCTTTTTTTCAGCTTCCCATACCTA 1962
Query 1980 TGCATCCTGCTGTATTACCTGATTTAATCATTGGTTTAGACAAATATCTTCAGTATTATG 2039
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1963 TGCATCCTGCTGTATTACCTGATTTAATTATTGGTTTAGACAAATATCTTCAGTATTATG 2022
Query 2040 TCTCAAAGGCAAAATCTGGCTGCGGCTCTCGGACTACGTACATGCCCACAATGCCTGCAC 2099
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2023 TCTCAAAGGCGAAATCTGGCTGCGGCTCTCGGACTACGTACATGCCTACAATGCCTGCAC 2082
Query 2100 TCACCCGATGTACAACGGAATCAAAATTCCAATGGAAGAAGAAAGAAAAGACACCTATCT 2159
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 2083 TCACCAGATGTACAACGGGATCAAAATTCCAATGGAAGAAGAAAGAAAAGACACCTACCA 2142
Query 2160 CTCAGAAGAGAGACGCTCAGGTTTCGGTTATGAACGGTGAGAATTCCTTTGGGGTCACGC 2219
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2143 CTCAGAAGAGAGAATCTCAGGTTTCGGTTATGAACGGTGAGAATTCTTTTGGGGTCACGC 2202
Query 2220 AGATATGTGTCAGAATAAACAGCTTGCACAAAATCCGCAGTGAGCTCGATGTTGTGGAAA 2279
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2203 AAATATGTGTCAGAATAAACAGCTTGCACAAAATCCGCAGTGAGCTTGATGTTGTGGAAA 2262
Query 2280 AAAGAGTGATCACACATTTGAGGAACTGTGAGTCAGCTCACACTGATGACTTTTCCAACG 2339
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2263 AAAGAGTGATCACACATTTGAGGAACTGTGAGTCAGCTCACACCGATGACTTTTCCAACG 2322
Query 2340 GCTTAGaaaaaaaGTTTGAGCTCACACCAGCGGCTTGCATCGAAGGTGTTCAACAGCTTT 2399
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 2323 GCTTAGAAAAAAAGTTTGAGCTCACACCAGCGGCTTGCATAGAAGGCGTTCAACAGCTTT 2382
Query 2400 CTGAGTCTTTGGCTTACAAAGTCGTTTTCCACGACCTAAGCCACACATTATGGGATGGGT 2459
|||||||| ||||||| || ||||| |||||||||||||||||||| |||||||| ||||
Sbjct 2383 CTGAGTCTCTGGCTTATAAGGTCGTCTTCCACGACCTAAGCCACACGTTATGGGACGGGT 2442
Query 2460 TATACATCGGTGACCTCTCTTCCTCTAGAATAGATCCTTTCCTCAAGGAGCTCGAACAGA 2519
|||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 2443 TATACATCGGAGACCTCTCTTCCTCTAGAATCGATCCTTTCCTCAAGGAACTCGAACAGA 2502
Query 2520 ATTTGACAGTCATAGCAGAGACAGTACATGAAAGAGTCCGAACACGCATCATAACCGATA 2579
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 2503 ATTTGACAGTCATAGCAGAGACAGTACATGAAAGAGTTCGAACACGCATCATCACCGATA 2562
Query 2580 TTATGAGAACCTCTTTCGATGGCTTCTTACTTGTCCTGCTCGCTGGAGGACCCTCTAGGG 2639
|||||||| ||||||| ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 2563 TTATGAGAGCCTCTTTAGATGGCTTCTTACTTGTCCTGCTTGCCGGAGGACCCTCTAGGG 2622
Query 2640 CGTTCACAAGACAAGACTCTCAGATAATGGAAGAAGATTTCAAATCAATGAAAGATATGT 2699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2623 CGTTCACAAGACAAGACTCTCAGATAATGGAAGAAGATTTCAAATCAATGAAAGATATGT 2682
Query 2700 TCTGGGCGAACGGAGATGGTCTAGCCATGGACCTGATCGATAAATTCTCGACCACGGTCA 2759
||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 2683 TCTGGGCTAACGGAGACGGTCTAGCCATGGACCTGATCGATAAATTCTCAACCACTGTCA 2742
Query 2760 GAGGTGTGCTTCCTCTGTTTAGCACAGACACGGACAGTTTAATAGAGAGGTTCAAGGGAA 2819
|||| |||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct 2743 GAGGCGTGCTTCCTCTGTTCAGTACAGATACAGACAGTTTAATAGAGAGGTTCAAGGGAA 2802
Query 2820 CGACGCTCGAAGCTTACGGGTCTTCAGCTAAGTCGAGGCTTCCGTTGCCTCCAACATCAG 2879
|||| |||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 2803 CGACCCTCGAAGCATATGGTTCTTCAGCTAAGTCGAGGCTTCCGTTGCCTCCAACATCAG 2862
Query 2880 GCCAGTGGAATGGCATGGAGCCAAACACGCTCTTACGTGTTTTATGTTACCGTAACGATG 2939
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 2863 GCCAGTGGAATGGCATGGAGCCAAACACACTCTTACGTGTTTTGTGTTACCGTAACGACG 2922
Query 2940 AATCTGCCACGAGGTTTCTCAAGAAAACATATAATCTGCCAAAGAAGCTCTAGTGGACTT 2999
||||||||||||||||||||||||| ||||||||||| || |||||||| |||| ||||
Sbjct 2923 AATCTGCCACGAGGTTTCTCAAGAAGACATATAATCTACCTAAGAAGCTTTAGTAAACTT 2982
Query 3000 A-GGACTACTACTGCAACGTTTAATAACCTCACAAGAAGAAGAGTGTGT-T-CCACTTGC 3056
| || ||||||||||||||| |||||||||||||||| ||||||||||| | ||||||||
Sbjct 2983 ACGG-CTACTACTGCAACGTATAATAACCTCACAAGATGAAGAGTGTGTGTTCCACTTGC 3041
Query 3057 AGGAGGGAGCATCCGAGATTTGTATAGTGAGTTTCAtttttttttgttttatggtttttt 3116
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3042 AGGAGGGAGCCTCCGAGATTTGTATAGTGAGTTTCATTTTTTTT-GTTTTATGGTTTTTT 3100
Query 3117 g----a-tacattcctatacgtatttatatattttttctattcatttatctcgtttgtta 3171
| |||||||||||||||| | ||||| || | ||| || |||| |||||||
Sbjct 3101 TTTCTAATACATTCCTATACGTACT-ATATAATT---C-ATTTAT--ATCT--TTTGTTA 3151
Query 3172 ttattatttttgaagattatACAAATAACTTATTCGATGT 3211
||||||||||||||| | ||||||||||||||||||||||
Sbjct 3152 TTATTATTTTTGAAG-T-ATACAAATAACTTATTCGATGT 3189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 159731546512
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5