BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481434
Length=732
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25820.1 | Symbols: | Integrase-type DNA-binding superfamil... 863 0.0
AT2G44940.1 | Symbols: | Integrase-type DNA-binding superfamil... 115 6e-25
> AT2G25820.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr2:11014890-11015800 FORWARD LENGTH=911
Length=911
Score = 863 bits (467), Expect = 0.0
Identities = 624/694 (90%), Gaps = 34/694 (5%)
Strand=Plus/Plus
Query 1 ATGGTGGATTCTCATGGTTCCGACACGGAATGTTCCTCAACCAAGAAGAGAAAGGAGAAA 60
||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||
Sbjct 97 ATGGTGGATTCTCATGGCTCCGACACGGAATGTTCCT---CCAAGAAGAAAAAGGAGAAA 153
Query 61 CCCAAAGAAAAAGGGGTATATCATGGGGCTCGCATGAGGAGCTGGGGGAAATGGGTCTCG 120
| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 154 ACGAAAGAAAAGGGGGTATATCGTGGGGCTCGCATGAGGAGCTGGGGGAAATGGGTCTCG 213
Query 121 GAGATTCGGGAGCCTCGTAAGAAATCAAGAATCTGGCTCGGGACTTTCCCCACGGCGGAG 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 GAGATTCGGGAGCCCCGTAAGAAATCAAGAATCTGGCTCGGGACTTTCCCCACGGCGGAG 273
Query 181 ATGGCAGCCCGTGCCCACGATGTTGCGGCATTGAGTATCAAAGGAAGTTCCGCAATCCTC 240
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 274 ATGGCAGCGCGTGCCCATGATGTTGCGGCATTGAGTATCAAAGGAAGTTCCGCAATCCTT 333
Query 241 AACTTTCCC-GAGCTCGCGGATTTTCTGCCACGACCTGTCTCGCTCAGCCAACAGGACAT 299
||||| ||| ||||||||||||||||||||| |||| |||||||||||||||||||| ||
Sbjct 334 AACTT-CCCTGAGCTCGCGGATTTTCTGCCAAGACCAGTCTCGCTCAGCCAACAGGATAT 392
Query 300 CCAGGCTGCTGCTACCAAAGCCGCTCTTATGGATTTCAAAACTGTACCATTCCATCTTCA 359
|||||| || || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 CCAGGCCGCAGCCGCCGAAGCCGCTCTTATGGATTTCAAAACTGTACCATTCCATCTTCA 452
Query 360 GGATGAAACAACGCCGTTGCAAACTAGGTGTGATACTGAGAAGATCGAAAAGAGatcatc 419
|||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 453 GGATGACTCAACGCCGTTGCAAACTAGGTGTGATACTGAGAAGATCGAAAAGTGGTCATC 512
Query 420 ctcatc--c-tca---tc--c-tcatcctcatc--c-tc---gtc---atc-T--ATGCT 458
|||||| | ||| || | ||||||||||| | || ||| ||| | |||||
Sbjct 513 CTCATCGTCCTCAGCCTCATCCTCATCCTCATCTTCGTCCTCGTCCTCATCATCTATGCT 572
Query 459 CTCGGAGGAGCTAGGAGATATTGTGGAGTTGCCGAGTCTTGAAAACAATGTAAAA-ACCG 517
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 573 TTCGGGGGAGCTAGGAGATATTGTGGAGTTGCCGAGTCTTGAAAACAATGTAAAATAC-G 631
Query 518 ATT-TCGCGCTTTATGACTCGTTAGAGGGGCTGGTATCGATGCCCCCATGGTTAGATGTT 576
||| | ||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |
Sbjct 632 ATTGT-GCGCTGTATGACTCGTTGGAGGGGCTGGTGTCGATGCCCCCATGGTTAGATGCT 690
Query 577 ACCGAAGAA-GATTTTACGTATGGACATGATTCAGTAATGTTAGACCCACGTCTCCAAGA 635
|||||| || ||||||| ||||||| ||||||| ||| |||| |||||| ||||| ||||
Sbjct 691 ACCGAA-AATGATTTTAGGTATGGAGATGATTCGGTACTGTTGGACCCATGTCTCAAAGA 749
Query 636 AAGTTTTTTGTGGAATTATGAGTAA--ttttttt 667
||| ||||||||||||||||||||| |||||||
Sbjct 750 AAGCTTTTTGTGGAATTATGAGTAAGGTTTTTTT 783
> AT2G44940.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr2:18537257-18538418 FORWARD LENGTH=1162
Length=1162
Score = 115 bits (62), Expect = 6e-25
Identities = 99/117 (85%), Gaps = 2/117 (2%)
Strand=Plus/Plus
Query 94 ATGAGGAGCTGGGGGAAATGGGTCTCGGAGATTCGGGAGCCTCGTAAGAAATCAAGAATC 153
|||||||| ||||| |||||||| ||||||||| | ||||| | |||||||||||||||
Sbjct 350 ATGAGGAGTTGGGGAAAATGGGTGTCGGAGATTAGAGAGCCGAGAAAGAAATCAAGAATC 409
Query 154 TGGCTCGGGACTT-TCCCCACGGCGGAGATGGCAGCCCGTGCCCACGATGTTGCGGC 209
||||||||||||| ||| ||||| ||||||||||| || || || || || |||||
Sbjct 410 TGGCTCGGGACTTATCCA-ACGGCTGAGATGGCAGCTCGAGCTCATGACGTAGCGGC 465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35515541929
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5