BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481441
Length=1076
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24350.2 | Symbols: SYP32 | syntaxin of plants 32 | chr3:88... 1227 0.0
> AT3G24350.2 | Symbols: SYP32 | syntaxin of plants 32 | chr3:8837608-8839702
FORWARD LENGTH=1511
Length=1511
Score = 1227 bits (664), Expect = 0.0
Identities = 793/856 (93%), Gaps = 6/856 (1%)
Strand=Plus/Plus
Query 227 TTGCAAAGAGGACATCAGTTTTTGATGATCCGACTCAGGAGATACAAGAGCTGACAGTAG 286
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 412 TTGCAAAGAGGACATCAGTGTTTGATGATCCTACTCAGGAGATACAAGAGCTGACGGTAG 471
Query 287 TCATCAAGCAAGAGATCTCTGCTCTAAATACTGCTCTGCTCGACCTGCAAGTGTTTCGTA 346
||||||||||||||||||||||||||||| |||||||| ||||||| ||| |||| || |
Sbjct 472 TCATCAAGCAAGAGATCTCTGCTCTAAATTCTGCTCTGGTCGACCTTCAATTGTTCCGCA 531
Query 347 GCTCTCAGAATGATGAAGGGAACAACTCT--AG--A--GATAAAACTACTCACTCAGCAA 400
| |||||||||||||||||||| |||||| || | || |||| ||||||||||||||
Sbjct 532 GTTCTCAGAATGATGAAGGGAATAACTCTAGAGACAGGGACAAAAGTACTCACTCAGCAA 591
Query 401 CAGTTGTTGACGATCTTAAGTATCGGCTGATGGATACTACCAAAGAGTTTAAGGATGTTC 460
| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 592 CTGTTGTTGACGATCTAAAGTATCGTTTGATGGATACTACCAAAGAGTTTAAGGATGTTC 651
Query 461 TTACCATGAGAACCGAGAACATGAAGGTCCATGAAAATCGAAGGCAACTCTTCTCTTCAA 520
||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||
Sbjct 652 TTACCATGAGAACCGAGAATATGAAGGTCCATGAAAGTAGAAGGCAACTCTTCTCTTCAA 711
Query 521 ATGCGTCAAAAGAATCAACAAACCCATTCGTTCGCCAGCGCCCTTTGGCTGCTAAGGCTT 580
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 712 ATGCTTCAAAAGAATCAACAAACCCATTCGTTCGCCAGCGTCCTTTGGCTGCTAAGGCTG 771
Query 581 CTGCTAGTGAATCTGCTCCTCTTCCATGGGCGAATGCGTCTTCTTCATCGTCATCGCAGT 640
||||||||||||||| ||||||||||||||| |||| |||||||||||| ||||| ||||
Sbjct 772 CTGCTAGTGAATCTGTTCCTCTTCCATGGGCAAATGGGTCTTCTTCATCTTCATCTCAGT 831
Query 641 TAGTCCCATGGAAGCAGGGAGAGGCCGAATCTGCACCATTGTTgcagcagagtcaacaac 700
||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||
Sbjct 832 TAGTCCCATGGAAGCCGGGAGAGGGAGAATCTTCACCATTGTTGCAGCAGAGTCAACAAC 891
Query 701 aacaacagcagcagcagcaacagATGGTCCCATTGCAAGATACATATATGCAGAGCCGAG 760
|||| || ||||| |||||||| ||||||||||||||||| |||||||||||| | ||||
Sbjct 892 AACAGCAACAGCAACAGCAACAAATGGTCCCATTGCAAGACACATATATGCAGGGTCGAG 951
Query 761 CTGAAGCTCTACACAATGTCGAATCAACAATCCATGAGCTAAGCAATATCTTCACACAAC 820
| ||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||
Sbjct 952 CAGAAGCTCTACACACCGTTGAATCAACAATCCATGAGCTAAGCAGTATCTTCACACAAC 1011
Query 821 TAGCAACCATGGTTTCTCAGCAAGGGGAGATTGCTATCAGAATCGATCAAAACATGGAAG 880
||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||
Sbjct 1012 TAGCAACCATGGTTTCTCAACAAGGGGAAATTGCAATCAGGATCGATCAAAACATGGAAG 1071
Query 881 ATACATTAGCGAATGTGGAAGGCGCACAGAGCCAGCTTGCCAGGTATCTAAACAGCATAT 940
|||||||||| ||||||||||||||||||||||| || ||||||||||| ||||| ||||
Sbjct 1072 ATACATTAGCAAATGTGGAAGGCGCACAGAGCCAACTGGCCAGGTATCTCAACAGTATAT 1131
Query 941 CGTCAAACCGATGGCTGATGATGAAGATTTTCTTCGTACTCATTGCATTTCTCATGATTT 1000
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 CATCAAACCGATGGCTAATGATGAAGATTTTCTTCGTACTCATTGCATTTCTCATGATTT 1191
Query 1001 TCCTCTTCTTCGTGGCGTAAACATTGAGACTAAAAATTGACTTTAAAGAGTTTCAACATC 1060
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1192 TCCTCTTCTTCGTGGCATAAACATTGAGACTAAAAATTGATTTTAAAGAGTTTCAACATC 1251
Query 1061 TAGACATGGTTCTTTT 1076
||||||||||||||||
Sbjct 1252 TAGACATGGTTCTTTT 1267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52710572250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5