BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481442
Length=970
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25880.1 | Symbols: AtAUR2, AUR2 | ataurora2 | chr2:11034652... 1375 0.0
AT4G32830.1 | Symbols: AtAUR1, AUR1 | ataurora1 | chr4:15842453... 850 0.0
> AT2G25880.1 | Symbols: AtAUR2, AUR2 | ataurora2 | chr2:11034652-11036910
REVERSE LENGTH=1185
Length=1185
Score = 1375 bits (744), Expect = 0.0
Identities = 849/900 (94%), Gaps = 6/900 (1%)
Strand=Plus/Plus
Query 1 TATCTTAGG-TCATCATCGATCTCTTCCATGGGGATTTCTACAGAGACGCAGCAAAATGC 59
|||||| || |||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 57 TATCTT-GGCTCATCAACGATCTCTTCCATGGGGATTTCTACAGAGACGCAGCAAATTGC 115
Query 60 GGTTTCAGAGGCTGCACAAAAGAGATGGACTACTAGCGATTTCGACGTTGGAAAGCCTCT 119
|| |||||||||||||||||||||||||||||| ||||||||||| | |||||||| ||
Sbjct 116 GGCTTCAGAGGCTGCACAAAAGAGATGGACTACAAGCGATTTCGATATCGGAAAGCCACT 175
Query 120 TGGTAGAGGGAAGTTTGGCCATGTTTATCTAGCAAGAGAGAAACGGAGCAATCACATTGT 179
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 176 TGGTAGAGGAAAGTTTGGCCATGTTTATCTAGCAAGAGAGAAACGGAGCGATCACATTGT 235
Query 180 GGCTCTT-AAGGTTCTTTTTAAGACTCAGCTTCAACAATCTCAAGTTGAGCACCAATTAC 238
|||| || ||||||||||||||| ||||||||||||||||||||||||| ||||| ||||
Sbjct 236 GGCT-TTAAAGGTTCTTTTTAAGGCTCAGCTTCAACAATCTCAAGTTGAACACCAGTTAC 294
Query 239 GAAGGGAAGTAGAGATTCAGTCTCATCTTCGGCATCCCAATATTCTGCGACTCTACGGTT 298
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 295 GAAGGGAAGTAGAGATTCAATCTCATCTTCGGCATCCCAATATTCTGCGGCTCTACGGTT 354
Query 299 ACTTCTATGATCAGAAAAGAGTTTATTTGATTTTAGAGTATGCAGCT-AGAGGTGAGCTT 357
|||||||||||||||||||||||||||||||||| |||||||| | | || |||||||||
Sbjct 355 ACTTCTATGATCAGAAAAGAGTTTATTTGATTTTGGAGTATGCTG-TAAGGGGTGAGCTT 413
Query 358 TATAAAGAGCTTCAGAAGTGCAAGTACTTCAGCGAACGTCGAGCAGCAACTTATGTTGCG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TATAAAGAGCTTCAGAAGTGCAAGTACTTCAGCGAACGTCGAGCAGCAACTTATGTTGCG 473
Query 418 TCATTGGCAAGAGCCCTCATCTATTGCCATGGAAAGCACGTTATTCACAGAGATATAAAG 477
|||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 474 TCATTGGCTAGAGCCCTCATCTATTGCCATGGAAAGCATGTAATTCACAGAGATATAAAA 533
Query 478 CCTGAAAATCTATTGATTGGTGCTCAGGGTGAGCTCAAGATTGCAGACTTTGGATGGTCA 537
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 534 CCTGAAAATCTGTTGATTGGTGCTCAGGGTGAGCTCAAGATTGCAGATTTTGGATGGTCA 593
Query 538 GTACACACATTCAACCGCAGAAGGACTATGTGTGGCACTTTGGATTACCTTCCGCCTGAG 597
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 594 GTACACACATTCAACCGTAGAAGGACTATGTGTGGCACTTTGGATTACCTTCCACCTGAG 653
Query 598 ATGGTCGAAAGCGTAGAACATGATGCAAGTGTGGATATATGGAGTCTAGGAATTCTCTGC 657
||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 654 ATGGTGGAAAGCGTTGAACATGATGCGAGTGTCGATATATGGAGTCTAGGAATTCTCTGC 713
Query 658 TACGAATTTCTTTATGGTGTCCCTCCTTTTGAGGCCAGGGAGCATTCAGAGACATACAAA 717
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 714 TACGAATTTCTTTATGGTGTTCCTCCTTTTGAGGCCAGGGAGCATTCAGAGACATACAAA 773
Query 718 AGGATTGTCCAAGTGGATCTCAAGTTCCCTCCAAAACCTATTGTGTCTTCATATGCAAAG 777
|||||||| ||||||||||||||||||||||| ||||| |||||||| |||| |||||||
Sbjct 774 AGGATTGTTCAAGTGGATCTCAAGTTCCCTCCCAAACCCATTGTGTCATCATCTGCAAAG 833
Query 778 GACTTGATTAGCCAGATGCTGGTTAAGGAGTCTACACAACGTTTGGCCTTGCACAAGCTT 837
||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 834 GACCTGATTAGCCAGATGTTGGTTAAGGAGTCTACGCAACGTTTGGCCTTGCACAAGCTT 893
Query 838 CTTGAACACCCGTGGATTGTGCAAAACGCAGATCCGTCGGGCATCTACAGAGGTTGAAGC 897
|||||||||||||||||||||||||||||||| || || ||| | |||||||| ||||||
Sbjct 894 CTTGAACACCCGTGGATTGTGCAAAACGCAGACCCATCAGGCCTTTACAGAGGATGAAGC 953
> AT4G32830.1 | Symbols: AtAUR1, AUR1 | ataurora1 | chr4:15842453-15844536
FORWARD LENGTH=1171
Length=1171
Score = 850 bits (460), Expect = 0.0
Identities = 707/827 (85%), Gaps = 14/827 (2%)
Strand=Plus/Plus
Query 70 GCTGCACAAAAGAGATGGACTACT-AGCGATTTCGACGTTGGAAAGCCTCTTGGTAGAGG 128
||||||||||||||||||||| | |||||||||||| | || ||||||||||| |||||
Sbjct 165 GCTGCACAAAAGAGATGGACT-TTAAGCGATTTCGACATCGGTAAGCCTCTTGGCAGAGG 223
Query 129 GAAGTTTGGCCATGTTTATCTAGCAAGAGAGAAACGGAGCAATCACATTGTGGCTCTTAA 188
|| || || || || ||||| || ||||| ||||||||||||||| |||| ||||| ||
Sbjct 224 CAAATTCGGTCACGTCTATCTCGCCAGAGAAAAACGGAGCAATCACGTTGTCGCTCTAAA 283
Query 189 GGTTCTTTTTAAGA-CTCAGCTTCAACAATCTCAAGTTGAGCACCA-ATTACGAAGGGAA 246
||||||||| |||| | |||||||||||||| |||||||| || || | | |||| |||
Sbjct 284 GGTTCTTTTCAAGAGC-CAGCTTCAACAATCCCAAGTTGAACATCAGCTCA-GAAGAGAA 341
Query 247 GTAGAGATTCAGTCTCATCTTCGGCATCCCAATATTCTGCGACTCTACGGTTACTTCTAT 306
|| |||||||||||||||||||| || ||||| || || || || || || || ||||||
Sbjct 342 GTTGAGATTCAGTCTCATCTTCGTCACCCCAACATACTCCGGCTTTATGGCTATTTCTAT 401
Query 307 GATCAGAAAAGAGTTTATTTGAT-TTTAGAGTATGCAGCTAGAGGTGAGCTTTATAAAGA 365
||||| ||||||||||||||||| || |||||||| |||||||| || ||||| || ||
Sbjct 402 GATCAAAAAAGAGTTTATTTGATACTT-GAGTATGCTGCTAGAGGCGAACTTTACAAGGA 460
Query 366 GCTTCAGAAGTGCAAGTACTTCAGCGAACGTCGAGCAGCAACTTATGTTGCGTCATTGGC 425
|||||||| ||||| |||||||||||| | ||||| || ||||||||||| ||||||||
Sbjct 461 TCTTCAGAAATGCAAATACTTCAGCGAAAGACGAGCTGCTACTTATGTTGCCTCATTGGC 520
Query 426 AAGAGCCCTCATCTATTGCCATGGAAAGCACGTTATTCACAGAGATA-TAAAGCCTGAAA 484
|| || ||||||||||||||||| ||||| || || |||||||||| |||| || || |
Sbjct 521 GAGGGCTCTCATCTATTGCCATGGCAAGCATGTGATACACAGAGATATTAAA-CCAGAGA 579
Query 485 ATCTATTGATTGGTGCTCAGGGTGAGCTCAAGATTGCAGACTTTGGATGGTCAGTACACA 544
|||| | |||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 580 ATCTGCTAATTGGTGCTCAGGGTGAGCTCAAGATTGCAGACTTTGGTTGGTCGGTACACA 639
Query 545 CATTCAACCGCAGAAGGACTATGTGTGGCACTTTGGATTACCTTCCGCCTGAGATGGTCG 604
|||| ||||| |||||||| ||||||||||| | ||||||||||| |||||||||||||
Sbjct 640 CATTTAACCGAAGAAGGACCATGTGTGGCACACTAGATTACCTTCCTCCTGAGATGGTCG 699
Query 605 AAAGCGTAGAACATGATGCAAGTGTGGATATATGGAGTCTAGGAATTCTCTGCTACGAAT 664
||||||||||||||||||| ||||| ||||| ||||| || || |||||||| ||||| |
Sbjct 700 AAAGCGTAGAACATGATGCTAGTGTAGATATCTGGAGCCTTGGGATTCTCTGTTACGAGT 759
Query 665 TTCTTTATGGTGTCCCTCCTTTTGAGGCCAGGGAGCATTCAGAGACATACAAAAGGATTG 724
||||||||||||| ||||||||||| |||| |||||| ||||| ||||||| ||||||||
Sbjct 760 TTCTTTATGGTGTACCTCCTTTTGAAGCCATGGAGCACTCAGACACATACAGAAGGATTG 819
Query 725 TCCAAGTGGATCTCAAGTTCCCTCCAAAACCTATTGTGTCTTCATATGCAAAGGA-CTTG 783
| ||||||||||||||||||||||| ||||| || | ||| ||| ||||||||| |||
Sbjct 820 TGCAAGTGGATCTCAAGTTCCCTCCCAAACCAATAATCTCTGCATCTGCAAAGGATCTT- 878
Query 784 ATTAGCCAGATGCTGGTTAAGGAGTCTACACAACGTTTGGCC-TTGCACAAGCTTCTTGA 842
|||||||||||||| || ||||||||| | |||||| || || |||||||||||||| ||
Sbjct 879 ATTAGCCAGATGCTTGTCAAGGAGTCTTCGCAACGTCTG-CCATTGCACAAGCTTCTGGA 937
Query 843 ACACCCGTGGATTGTGCAAAACGCAGATCCGTCGGGCATCTACAGAG 889
|| |||||||| ||||||||||| ||||| || || ||||||||||
Sbjct 938 GCATCCGTGGATCGTGCAAAACGCTGATCCTTCTGGAATCTACAGAG 984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47471268915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5