BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481444
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25900.1 | Symbols: ATCTH, ATTZF1 | Zinc finger C-x8-C-x5-C-... 1637 0.0
> AT2G25900.1 | Symbols: ATCTH, ATTZF1 | Zinc finger C-x8-C-x5-C-x3-H
type family protein | chr2:11041331-11043209 FORWARD
LENGTH=1787
Length=1787
Score = 1637 bits (886), Expect = 0.0
Identities = 1040/1110 (94%), Gaps = 28/1110 (3%)
Strand=Plus/Plus
Query 1 AACTTTACCGTAGTTAATA-TTGACCCAACCATGGTTAAAATAAAGCAGTTTATAACACA 59
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 296 AACTTTACCGTAGTTAATATTTGACCCAACCATGGTTAAAATAAAGCAGTTTATATCACA 355
Query 60 GAAACACACTTCTCTCATC-TCTAGACTCACTCACAACAAAAATGATGATCGGAGAAAAT 118
|| |||||| |||||| || |||||||||||| | |||||||||||||||||| ||||||
Sbjct 356 GACACACACCTCTCTC-TCTTCTAGACTCACT-A-AACAAAAATGATGATCGGCGAAAAT 412
Query 119 AATAACCGGCCACATCCGACGATCCATATCCCTCAATGGGATCAAATCAACGATCCAACG 178
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 AAAAACCGGCCACATCCAACGATCCATATCCCTCAATGGGATCAAATCAACGATCCAACG 472
Query 179 GTCACAATCTCTTCACCATTCACTTCCGTCAACAC-AAACGGCGTTAACGACTACCCACA 237
| ||||||||||||||||||| ||||||||||| | ||| |||||||||||||||||||
Sbjct 473 GCCACAATCTCTTCACCATTCTCTTCCGTCAAC-CTTAACAGCGTTAACGACTACCCACA 531
Query 238 CTCTCCGTCACCGTACCTCGAATCCTTCGCTTCTCTCTTCCGTTACCTCCCGTCAAACGA 297
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 532 CTCTCCGTCACCGTATCTCGACTCCTTCGCTTCTCTCTTCCGTTACCTCCCGTCAAACGA 591
Query 298 GTTAACAAACGATTCCGACTCATCAAGCGGAGACGAGTCATCATCACTCACCGACTCGTT 357
||||||||||||||| ||||||||||| || |||||||||||| ||||||||||||| ||
Sbjct 592 GTTAACAAACGATTCAGACTCATCAAGTGGCGACGAGTCATCACCACTCACCGACTCATT 651
Query 358 CTCCTCCGACGAGTTTCGCATGTACGAGTTCAAAATCCGGCGATGCGCTCGAGACCGATC 417
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 652 CTCCTCCGACGAGTTTCGCATCTACGAGTTCAAAATCCGGCGATGCGCTCGAGGTCGATC 711
Query 418 TCATGATTGGACGGAGTGTCCGTTTGCACATCCCGGAGAAAAAGCTCGCCGACGTGATCC 477
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 712 TCATGATTGGACGGAGTGTCCGTTCGCACATCCCGGAGAAAAAGCTCGACGACGTGATCC 771
Query 478 AAGGAAGTTTCATTACTCCGGCACCGCTTGTCCTGAGTTTCGAAAAGGAAGTTGTAGAAG 537
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 772 GAGAAAGTTTCATTACTCCGGCACCGCTTGTCCTGAGTTTCGTAAAGGAAGTTGTAGAAG 831
Query 538 AGGTGATTCGTGTGAGTTCGCTCATGGAGTTTTCGAGTGTTGGCTTCATCCTTCTCGTTA 597
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 832 AGGTGATTCGTGTGAGTTCTCTCATGGAGTTTTCGAGTGTTGGCTCCATCCTTCTCGTTA 891
Query 598 TCGTACTCAGCCGTGTAAAGACGGAACGAGTTGCCGGAGAAGGATCTGTTTCTTCGCTCA 657
|||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 892 CCGTACTCAGCCGTGTAAAGACGGAACTAGCTGCCGGAGAAGAATCTGTTTCTTCGCTCA 951
Query 658 TACGACGGAGCAGTTACGAGTTTTACCTTGTTCGTTAGATCCAGATCTTGGATTCTTCTC 717
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 952 TACGACGGAGCAGTTACGTGTATTACCTTGTTCGTTAGATCCAGATCTTGGATTCTTCTC 1011
Query 718 A---TC-G--ACTTCTCCGACTTCGATTCTTGTTTCTCCTTCGTTTTCTCCACCGTCGGA 771
| | | |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1012 AGGATTAGCTACTTCTCCGACTTCGATTCTTGTTTCTCCTTCGTTTTCACCACCGTCGGA 1071
Query 772 ATCTCCGCCGCTTTCTCCGAGTACCGGTGAACTTATTGCGTCGATGAGGAAAATGCAATT 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 ATCTCCGCCGCTTTCTCCGAGTACCGGTGAACTTATTGCGTCGATGAGGAAAATGCAATT 1131
Query 832 GAACGGAGGTGGTTC--C-TGGAGTTCTTCTCCGGTGAGATCTGGAGTTAGGTTACCTTT 888
|||||||||||||| | ||||||||| | | | ||||||||| |||||||||||||||
Sbjct 1132 GAACGGAGGTGGTTGTTCGTGGAGTTCT-C-C-GATGAGATCTGCAGTTAGGTTACCTTT 1188
Query 889 TTCGTCGTCTTTGCGTCCGATTCAGGCG-CAGACGTGGCCGAGAATAAGAGAGTTTGAGA 947
|||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 1189 TTCGTCGTCTCTGCGTCCGATTCAGGCGGCA-ACGTGGCCGAGGATAAGAGAGTTTGAGA 1247
Query 948 TCGAAGAAGCTCCGGCGATGGAGTTTGTGGAATCTGGGAAAGAGCTGAGAGCGGAGATGT 1007
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1248 TCGAAGAAGCTCCGGCGATGGAATTTGTGGAATCTGGGAAAGAGCTGAGAGCGGAGATGT 1307
Query 1008 ATGCAAGACTCAGTAGAGAGAACTCACTCGGTTGAGTCGACTCGGCGACTCGGTCGAGTC 1067
|||||||||||||||||||||||||||||||||||||||||| || | ||| ||||
Sbjct 1308 ATGCAAGACTCAGTAGAGAGAACTCACTCGGTTGAGTCGACTTGG--A-TCG----AGTC 1360
Query 1068 TTTGATGACGTGGCGACTCGATCTGATTTT 1097
||||||||||||||||||||||||||||||
Sbjct 1361 TTTGATGACGTGGCGACTCGATCTGATTTT 1390
Score = 128 bits (69), Expect = 1e-28
Identities = 71/72 (99%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 1213 tcggctttactttgtttgttgtttattaatgttatatcattttgtaattaGTTCTCAAAT 1272
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 TCGGCTTTATTTTGTTTGTTGTTTATTAATGTTATATCATTTTGTAATTAGTTCTCAAAT 1673
Query 1273 GTATTTGGATAA 1284
||||||||||||
Sbjct 1674 GTATTTGGATAA 1685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63152285610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5