BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481446 Length=2055 Score E Sequences producing significant alignments: (Bits) Value AT2G12420.1 | Symbols: | transposable element gene | chr2:5027... 1718 0.0 AT4G05505.1 | Symbols: | transposable element gene | chr4:2785... 1709 0.0 AT4G06570.1 | Symbols: | transposable element gene | chr4:3518... 1548 0.0 AT4G06627.1 | Symbols: | transposable element gene | chr4:3604... 1515 0.0 AT1G38140.1 | Symbols: | transposable element gene | chr1:1430... 455 8e-127 AT2G05647.1 | Symbols: | transposable element gene | chr2:2104... 302 1e-80 AT4G08598.1 | Symbols: | transposable element gene | chr4:5480... 250 4e-65 AT5G28464.1 | Symbols: | transposable element gene | chr5:1039... 86.1 1e-15 > AT2G12420.1 | Symbols: | transposable element gene | chr2:5027376-5029321 REVERSE LENGTH=1946 Length=1946 Score = 1718 bits (930), Expect = 0.0 Identities = 1283/1440 (89%), Gaps = 77/1440 (5%) Strand=Plus/Plus Query 666 TAT-TGGTAAGCTGAGTAGATTAGG-TTTAGGGTTAATATTGAGTAATGTGTGTGTGTAT 723 ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 459 TATATGGTAAGCTGAGTAGATTAGGTTTTAGGGTTAATATTGAGTAATGTGTGTGTATAT 518 Query 724 --CTGCTAAGTAGATTAGGTGTGTATATGGTAAGCTGAGTATATTAGGTTTAGGGTTAAT 781 |||||||| |||| |||||||||||||||||||| ||| |||| |||||||| |||| Sbjct 519 AGATGCTAAGTTGATTGGGTGTGTATATGGTAAGCTGTGTAGATTACGTTTAGGGGTAAT 578 Query 782 ATTGAGTAATATGTGTGTGTATGGTA-A-GCTGAGTAGATTAGTATAAAGCTTGCTAATT 839 |||||||||||||||| ||||| || | ||| ||| |||||| | ||| |||||| Sbjct 579 ATTGAGTAATATGTGTATGTAT-ATAGATGCTAAGTTGATTAG-GT----CTT-CTAATT 631 Query 840 GGTTTATGTAATTGTAGGTTTGGTCACGACAATGG----TAAGCTGACCCGGAAGATCAC 895 ||||||||||||||||| ||||||||||||||||| |||| ||||| ||||||| | Sbjct 632 GGTTTATGTAATTGTAGATTTGGTCACGACAATGGTAATTAAGTTGACCTGGAAGATTGC 691 Query 896 AAAGGTATTCACAAACAAGTTTAATGGGCCA-TATTACAATTGGAGCTGTGTACCTACTG 954 |||||||||||||||||||||| |||||||| | ||||| ||||||||||||| |||||| Sbjct 692 AAAGGTATTCACAAACAAGTTTGATGGGCCATTTTTACAGTTGGAGCTGTGTATCTACTG 751 Query 955 AAAGAAGACACAAATACTTCCTCGAATTCGCGGT-AA-----A-------TTAA-C--TT 998 ||| |||||| |||||||||||||||||| | || || | |||| | || Sbjct 752 AAA-AAGACATAAATACTTCCTCGAATTCAC-GTAAACTTCTATCTCCTGTTAATCTTTT 809 Query 999 -CTATTGTCTGTATCCATTTGGTTTGGTTTGGTTGTTTGATCACTAACATCAAACTCTCC 1057 ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 810 ACTATTGTCTATATCCATTTGGTTTGGTTTCGTTGTTTGATCACTAACATCAAACTCTCC 869 Query 1058 TC-TTGTTTTGTAGAAAACACACACATGGCATCCATCACTGACCGGTGTAATTGAAGAGA 1116 || || |||||||||||||||||||||| ||||||||||| |||||| |||||||||||| Sbjct 870 TCTTTTTTTTGTAGAAAACACACACATGACATCCATCACTAACCGGTATAATTGAAGAGA 929 Query 1117 AATTCTACAAAATATGTCAGCTGCGTATGAAGGACATGGTTTCTAAGGCTTGCTCAAAAC 1176 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 930 AATTCTACAAAATATGTTAGCTGCGTATGAAGGACATGGTTTCTAAGGCTTGCTCAAAAT 989 Query 1177 GAGCCACTGAG-AGACCGCCATGGATTG-AGAAGACATTGTGGAAGGAAATGTGTGAGTA 1234 |||||| | || | |||||||||||||| || |||||||||||||||||||||||||||| Sbjct 990 GAGCCAATTAGCA-ACCGCCATGGATTGAAG-AGACATTGTGGAAGGAAATGTGTGAGTA 1047 Query 1235 TTGGGACACAGAAGAAG-CACTTGCCAAGAGTT-CAACCACATCAGCAGCTCGAATGTCT 1292 ||| ||||||||||||| || |||||||||||| ||| |||||||||||||||||||||| Sbjct 1048 TTGAGACACAGAAGAAGCCA-TTGCCAAGAGTTCCAATCACATCAGCAGCTCGAATGTCT 1106 Query 1293 GACCGTAATGGTCTTGGTCCTCACAAGCATGTATCGGGGCCAAAGTCTTTCTTACAAATC 1352 |||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||| Sbjct 1107 GACCGTAATGGTCTTGGTTCTCACAAGCATGTATCAGGGCCAAAGTCTTTCTTATAAATC 1166 Query 1353 GAGCAAGAGATGGTAAGTTACATCAAGCACTCTTGTTTATTTACATAATGGTTTTCCTTA 1412 |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 1167 GAGCAAGAGATGGTAAGTTACATCAAGCACTCTTGTTTATTTACATAATGTTTTTTCTTA 1226 Query 1413 AGAATTTGAAtt-tt-ttt-GTGAACAACATTTCAGGAAATTGAGCTGGGAAGACCACCT 1469 |||| ||||||| || ||| |||||||||||||||||||||| |||| ||||||||||| Sbjct 1227 AGAAGTTGAATTGTTGTTTTGTGAACAACATTTCAGGAAATTTAGCTCAGAAGACCACCT 1286 Query 1470 ACTATTGGTGAGATATT-CATTAGGACTCATACCAAAAAAGATGGGAGTTTTGTTGATAG 1528 | | ||||||||||||| | ||||||||||||||||||||||||||| |||||||||||| Sbjct 1287 AGTGTTGGTGAGATATTTC-TTAGGACTCATACCAAAAAAGATGGGACTTTTGTTGATAG 1345 Query 1529 GAAGGCGCAGGAAATTCATGAGGCATATTTGAAGAACAAGGAAGCTAAGTTGGCTGCCCT 1588 ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1346 GAAGGCGTAGGTAATTCATGAGGCATATTTGAAGAACAAGGAAGCTAAGTTGGCTGCCGT 1405 Query 1589 TGTGAATGATGAAGGGTCTGATGGTACATCCCGTCGATCAGAACTATCTCAAGAGGAGGA 1648 || |||||||||||||||||||||||| |||| | ||||| |||||||||||||| |||| Sbjct 1406 TGAGAATGATGAAGGGTCTGATGGTACTTCCCATGGATCATAACTATCTCAAGAGAAGGA 1465 Query 1649 TGATGAGATCTTCCTTCTGGTAATGt--tt--t--tttATTA-TT---ATCA-C--TTAC 1695 ||||||||||||||||| |||||||| || | ||| || || |||| | |||| Sbjct 1466 TGATGAGATCTTCCTTCAGGTAATGTGGTTAATCCTTTTTTTCTTTGTATCATCACTTAC 1525 Query 1696 TTCATCTTTTAAGAACTAATCCTCTTGTCtttttttttGCAGTCAACTGTCACAAACGAG 1755 |||||||||||||||||||||||||||||| || | || ||||||||||| Sbjct 1526 TTCATCTTTTAAGAACTAATCCTCTTGTCT---------CA---A-CTATCACAAACGAG 1572 Query 1756 AGAGGGGTATACTTCGGAATGGGAAGCTTAGGGAGGTACATCAATGGGAAGCGGAAGCAC 1815 |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||| || Sbjct 1573 TGAGGCGTATACTTCGGAATGGGAAGCTTAGGGAGGT-CATTAATGGGAAGCGGAAGTAC 1631 Query 1816 CCAGGAAGCAGTTCTGCTTTCACTTCCTTGCAGTCACAGCTTGAGGAAGCCAACCGCAAG 1875 ||| ||||||||| |||||||||||||||||| ||||| |||||||||||||| |||||| Sbjct 1632 CCAAGAAGCAGTTATGCTTTCACTTCCTTGCAATCACATCTTGAGGAAGCCAATCGCAAG 1691 Query 1876 ATAGAAGAACAAGCGACTCTCCAAGCACATCGGGAGGCAGAGGCATTGCGGGTGAAAGCT 1935 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1692 ATAGAAGAACAAGCAACTCTCCAAGCACATCGTGAGGCAGAGGCATTGCGGGTGAAAGCT 1751 Query 1936 GAGCAAGCAGAGATCAAGCGTGTTGCTAATGAGCAACAAGCAGAGATCAAACACTTGAGG 1995 |||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1752 GAGCAACCAAAGATCAAGCGTGTTGCTAATGAGCAACAAGAAGAGATCAAACACTTGAGG 1811 Query 1996 ATGGTGAAGAAGTACTTGACCGAAACTGACCCCAAGTTTCTCGCCTTTCTCGAGTCTGCT 2055 ||||||||||||||||||||| |||||||||| | |||||||| ||| |||||||||||| Sbjct 1812 ATGGTGAAGAAGTACTTGACCAAAACTGACCCTAGGTTTCTCGTCTTCCTCGAGTCTGCT 1871 > AT4G05505.1 | Symbols: | transposable element gene | chr4:2785708-2787991 FORWARD LENGTH=2284 Length=2284 Score = 1709 bits (925), Expect = 0.0 Identities = 1257/1409 (89%), Gaps = 55/1409 (4%) Strand=Plus/Plus Query 679 AGTAGATTAGGTTTAGGGTTAATATTGAGTAATGTGTGTGTGTAT-CTGCTAAGTAGATT 737 ||| |||||| | || |||||||||||||||||||||||||||| || | |||| |||| Sbjct 818 AGTTGATTAGAATAAGAGTTAATATTGAGTAATGTGTGTGTGTATCCT-CAAAGTTGATT 876 Query 738 AGGTGTGT-ATAT-GGTAAGCTGAGTAT-ATTAGGTTTAGGGTTAATATTGAGTAATATG 794 |||||||| |||| ||| | ||| | |||||||| || |||||||||||||||| || Sbjct 877 AGGTGTGTAATATATTTAA--TAAGT-TGATTAGGTTAAGCGTTAATATTGAGTAATGTG 933 Query 795 TGTGTGTATGGTAAGCTGAGTAGATTAGTATAAAGCTTGCTAATTGGTTTATGTAATTGT 854 ||| | |||| |||| ||| ||| || |||| | |||||||||||||||||||||| Sbjct 934 TGTATATATGCTAAGTTGATTAGGTTTGTAT--A---TGCTAATTGGTTTATGTAATTGA 988 Query 855 AGGTTTGGTCACGACAATGGTAAGCTGACCCGGAAGATCACAAAGGTATTCACAAACAAG 914 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 989 AGGTTTGGTCACGACAATGGTAAGCTGACCCGGAAGATCACAAAGGTCTTCACAAACAAG 1048 Query 915 TTTAATGGGCCATATTACAATTGGAGCTGTGTACCTACTGAAAGAAGACACAAATACTTC 974 ||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 1049 TTTAATGGGCCATTTTACAGTTGGAGCTGTGTACCTACTGAAAGAAGACACATATACTTC 1108 Query 975 CTCGAATTCGCGGTAAATTAACTTCTATTGTC-T-GT-A--TC---CATTTGGTTTGGTT 1026 ||||||||||| |||||||||||||| | || | | | || |||||||||||||| Sbjct 1109 CTCGAATTCGCAATAAATTAACTTCTA-TCTCTTATTAATCTCTTACATTTGGTTTGGTT 1167 Query 1027 TGGTTGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAAAACACACACATGGC 1086 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1168 TGGTTGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAGTACACACACATGGC 1227 Query 1087 ATCCATCACTGACCGGTGTAATTGAAGAGAAATTCTACAAAATATGTC-AGCTGCGTATG 1145 ||||||||||||| |||||| ||||||| ||||||| |||||||||| | | ||||||| Sbjct 1228 ATCCATCACTGACTGGTGTAGTTGAAGAAAAATTCTTTAAAATATGTCAAAC-GCGTATG 1286 Query 1146 AAGGACATGGTTTCTAAGGCTTGCTCAAAACGAGCCACTGAGAGACCGCCATGGATTGAG 1205 |||||||||||||||||||||||| ||||||| || | |||| ||||||||||||||||| Sbjct 1287 AAGGACATGGTTTCTAAGGCTTGCGCAAAACGTGCAAATGAGCGACCGCCATGGATTGAG 1346 Query 1206 AAGACATTGTGGAAGGAAATGTGTGAGTATTGGGACACAGAAGAAG-CACTTGCCAAGAG 1264 ||||||||||||||||||||||||| ||||||||||||| |||||| || |||||||||| Sbjct 1347 AAGACATTGTGGAAGGAAATGTGTGCGTATTGGGACACAAAAGAAGCCA-TTGCCAAGAG 1405 Query 1265 TTCAACCACATCAGCAGCTCGAATGTCTGACCGTAATGGTCTTGGTCCTCACAAGCATGT 1324 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||| Sbjct 1406 TTCAACCACATCAGCAGCTTGAATGTCTGACCGTAATGGTCCTGGTCCTCACAAACATGT 1465 Query 1325 ATCGGGGCCAAAGTCTTTCTTACAAATCGAGCAAGAGATGGTAAGTTACATCAAGCACTC 1384 |||||||||||||||||||||||| || ||||||||||| ||||| | | | || | Sbjct 1466 ATCGGGGCCAAAGTCTTTCTTACAGATTGAGCAAGAGATAGTAAG-T---T--A-CA-T- 1516 Query 1385 TTGTTTATTTACATAATGGTTTTCCTTAAGAATTTGAAtttttttGTGAACAACATTTCA 1444 ||||||||||| | |||| |||| |||||| | |||||| ||||||||||||||||||| Sbjct 1517 TTGTTTATTTATAGAATGATTTTTATTAAGAGTCTGAATTGTTTTGTGAACAACATTTCA 1576 Query 1445 GGAAATTGAGCTGGGAAGACCACCTACTATTGGTGAGATATTCATTAGGACTCATACCAA 1504 |||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 1577 GGAAATTGAGTTGGGAAGACCACCTACTATTGGTGAGATATTCGTTAAGACTCATACCAA 1636 Query 1505 AAAAGATGGGAGTTTTGTTGATAGGAAGGCGCAGGAAATTCATGAGGCATATTTGAAGAA 1564 ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 1637 AAAAGATGGGACTTTTGTTGATAGGAAGGCGCATGAAATTCATGAGGCATATTTGAGGAA 1696 Query 1565 CAAGGAAGCTAAGTTGGCTGCCCTTGTGAATGATGAAGGGTCTGATGGTACATCCCGTCG 1624 ||||||||||||||||||||||| || ||||||||||||||| |||||||| |||||||| Sbjct 1697 CAAGGAAGCTAAGTTGGCTGCCCGTGAGAATGATGAAGGGTCAGATGGTACTTCCCGTCG 1756 Query 1625 ATCAGAACTATCTCAAGAGGAGGATGATGAGATCTTCCTTCTGGTAA------------- 1671 ||||||||||||||| ||||||||||||||| ||||||||| ||||| Sbjct 1757 ATCAGAACTATCTCAGGAGGAGGATGATGAGGTCTTCCTTCAGGTAATGGTCTTGTTCCT 1816 Query 1672 --TGt-ttttttAT-TATTATCACTTACTTCATCTTTT-AAGAACTAATCCTCTTGTCtt 1726 ||| |||||| | ||||||||||| ||||||||||| | || ||||||||||||| | Sbjct 1817 CTTGTCTTTTTTTTATATTATCACTTGCTTCATCTTTTCTACAA-TAATCCTCTTGTC-T 1874 Query 1727 tttttttGCAGTCAACTGTCACAAACGAGAGAGGGGTATACTTCGGAATGGGAAGCTTAG 1786 ||| |||||||||||||||||||||| ||||| |||||||||| |||||||||||||||| Sbjct 1875 TTTGTTTGCAGTCAACTGTCACAAACAAGAGATGGGTATACTTTGGAATGGGAAGCTTAG 1934 Query 1787 GGAGGTACATCAATGGGAAGCGGAAGCACCCAGGAAGCAGTTCTGCTTTCACTTCCTTGC 1846 |||||||||||||||| ||||||||| ||||||| ||||||||||||||||| |||||| Sbjct 1935 GGAGGTACATCAATGGAAAGCGGAAGTACCCAGGCTGCAGTTCTGCTTTCACTACCTTGC 1994 Query 1847 AGTCACAGCTTGAGGAAGCCAACCGCAAGATAGAAGAACAAGCGACTCTCCAAGCACATC 1906 ||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||| Sbjct 1995 AGTCACAGCTTTAGGAAGCCAACTGCAAGATAGAAGAACAAGCGACTCTCCAGGCACATC 2054 Query 1907 GGGAGGCAGAGGCATTGCGGGTGAAAGCTGAGCAAGCAGAGATCAAGCGTGTTGCTAATG 1966 | ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct 2055 GTGAGGCAGAGGCATTGAGGGTGAAAGCTGAGCAAGCAGATATCAAGCGTGTTGCTAATG 2114 Query 1967 AGCAACAAGCAGAGATCAAACACTTGAGGATGGTGAAGAAGTACTTGACCGAAACTGACC 2026 ||||||||| |||||||||||||||||||||||| |||||||||||||| |||| |||| Sbjct 2115 AGCAACAAGAAGAGATCAAACACTTGAGGATGGTTAAGAAGTACTTGACAGAAAGAGACC 2174 Query 2027 CCAAGTTTCTCGCCTTTCTCGAGTCTGCT 2055 ||||||||||||| || |||||||||||| Sbjct 2175 CCAAGTTTCTCGCATTCCTCGAGTCTGCT 2203 Score = 536 bits (290), Expect = 3e-151 Identities = 600/738 (81%), Gaps = 67/738 (9%) Strand=Plus/Plus Query 1 ATGAAGAC-TCGTGGTGGAAAAGGCAAGAGAGG-A-AGG--G-G-ATCGAAGATTccccc 53 |||||||| | ||||||| |||||||||||| | ||| | | ||| || ||| ||| Sbjct 1 ATGAAGACAT-GTGGTGG---AGGCAAGAGAGGAAGAGGAAGTGTATCAAACATT--CCC 54 Query 54 ccAAAATCGACCCACTTCTTCCCAGCCTGTACGAGTTGAATCGAAGAC-----C-TTGAA 107 | |||||||||||||||||||||||| || ||||||||| ||||||| | | || Sbjct 55 TC-AAATCGACCCACTTCTTCCCAGCCAGTTCGAGTTGAACCGAAGACTAGGGCATCAAA 113 Query 108 TCGAAGACCTAGGGGTCTTCCCAGCCAGTACGAGTTCACGCCGGCGAATCGTCAAGCCCC 167 |||||| || || |||| ||||||||| ||||||||||||| || || ||||| |||||| Sbjct 114 TCGAAGGCCCAGTGGTCATCCCAGCCACTACGAGTTCACGCTGGTGATTCGTCCAGCCCC 173 Query 168 ACTTCAAGATTCTGAACAAGAGCCGATTGCACAACCTCCAACGGGTCCAACCATCAGGGA 227 |||||||||| |||||| | |||| |||||| ||| ||||||||||| || ||||||| Sbjct 174 GCTTCAAGATTTTGAACATCATCCGACTGCACAGCCTTCAACGGGTCCATCCGTCAGGGA 233 Query 228 CTATCCTCCTCCGACGCAACTTTTCCAGTCAGGCGAAGGATCTCCTCGCGGATCTGG--C 285 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | Sbjct 234 CTATCCTCCTCCGACGCAACTTTTCCAGTCAGGCGAAGGGTCTCCTCGCGGATCTTGTTC 293 Query 286 TC---G---A-CTC---C-A-T-T-TC--GAGCATCCGGATCGACTCAACCTAGATCTGG 329 || | | || | | | | | |||||||||| |||||||||||||||||||| Sbjct 294 TCCTCGTGGATCTGGATCGACTCTGTTTTGAGCATCCGGCTCGACTCAACCTAGATCTGG 353 Query 330 AGGATCTCGTCGGTTCAACGGGAAGC-T-TAC----A-ATCAGTCTCCAGCGCCGGTTCA 382 ||||||| || | || || ||| | ||| | | || ||||||||| ||||||| Sbjct 354 AGGATCT-GT---T-CATCGTCTAGCCTCTACGGCGAGA-CAATCTCCAGCGGCGGTTCA 407 Query 383 ACGGGAA-GCCTCCAATCAGTCTCCAGCGCCGGTTCAACCG-GAAGCCTCCAATCCTCCA 440 | ||| ||||||||||||||| ||||| |||||||| | ||||| |||||||||| | Sbjct 408 -CAAGAATGCCTCCAATCAGTCTATAGCGCTGGTTCAAC-GAGAAGCATCCAATCCTCTA 465 Query 441 CCTCGGCAGGCGTCAAATCCTCCACCTCGAGCCTCTGTATCACATCACAGCTCTCAAGCT 500 | || ||| || |||||||||| ||||||||||| |||||| |||||||||||||||||| Sbjct 466 CTTCCGCAAGCCTCAAATCCTCTACCTCGAGCCTATGTATCTCATCACAGCTCTCAAGCT 525 Query 501 CAAAACTCACATGCGGAAGAAGATGAAGATGAGGAAGCTGAG---G---CTGAT-TATGA 553 ||||||||||| ||||| |||||||||||||| || |||||| | ||||| | ||| Sbjct 526 CAAAACTCACACGCGGAGGAAGATGAAGATGATGATGCTGAGTTTGTGGCTGATCT-TGA 584 Query 554 AAGGGAATCAACTCTCCCTGAAGATTCGCTTGCTACTCTCCATGAGTTGCTT-CTTCAGC 612 ||||||||||||||||||||||| || |||||| | ||| ||||| ||||| | |||| Sbjct 585 AAGGGAATCAACTCTCCCTGAAGCTTTGCTTGCAAATCTACATGACATGCTTGCC-CAGC 643 Query 613 CAGGACGTGAGAAGTTTACAACGGTCATCTCTCCCACATTTGAGCCTGGAACC-TATTGG 671 |||| |||||||||| ||||||||| ||||||||||||||||||||| |||| ||| || Sbjct 644 CAGGCCGTGAGAAGTATACAACGGTTATCTCTCCCACATTTGAGCCTCTAACCGTAT-GG 702 Query 672 TAAGCTGAGTAGATTAGG 689 ||||||||| | |||||| Sbjct 703 TAAGCTGAGAATATTAGG 720 > AT4G06570.1 | Symbols: | transposable element gene | chr4:3518688-3520916 FORWARD LENGTH=2229 Length=2229 Score = 1548 bits (838), Expect = 0.0 Identities = 1234/1411 (87%), Gaps = 84/1411 (6%) Strand=Plus/Plus Query 679 AGTAGATTAGGTTTAGGGTTAATATTGAGTAATGTGTGTGTGTATCTGCTAAGTAGATTA 738 ||| |||||||| || ||||||||||||||| ||||||| |||||||| ||||| Sbjct 846 AGTTGATTAGGTGAAGCGTTAATATTGAGTAA------TGTGTATATGCTAAGTTGATTA 899 Query 739 GGTGTGTATATGGTAAGCTGAGTATATTAGGTTTAGGGTTAATATTGAGTAATATGTGTG 798 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 900 GGTTTGTATATGGTAAGCTGAGTAGATTAGGTTTAGGGTTAATATTGAGTAATA--TGTG 957 Query 799 TGTATGGTAAGCTGAGTAGATTAGTATAAAGCTTGCTAATTGGTTTATGTAATTGTAGGT 858 || | || | | | ||| | ||||||||||||||||||||||||||| Sbjct 958 TG-A--GT----T---T--A-TAG-----A---TGCTAATTGGTTTATGTAATTGTAGGT 996 Query 859 TTGGTCACGACAATGGTAAGCTGACCCGGAAGATCACAAAGGTATTCACAAACAAGTTTA 918 |||||||||| ||||||||| |||||| |||||||||||||||||| | |||||||||| Sbjct 997 TTGGTCACGAAAATGGTAAGATGACCCAGAAGATCACAAAGGTATTTAAAAACAAGTTTG 1056 Query 919 ATGGGCCATATTACAATTGGAGCTGTGTACCTACTGAAAGAAGACACAAATACTTCCTCG 978 ||||||||||||||| |||||||| ||||||||| |||| |||||||||||||||||||| Sbjct 1057 ATGGGCCATATTACAGTTGGAGCTATGTACCTACAGAAA-AAGACACAAATACTTCCTCG 1115 Query 979 AATTCG-CG----GTAA-----A-----T--TAA---CTTCTATTGTCTGTATCCATTTG 1018 |||||| || ||| | | ||| |||||||||| |||||||||||| Sbjct 1116 AATTCGCCGTAAATTAACTTTTATCTCCTAGTAATCTCTTCTATTGTTTGTATCCATTTG 1175 Query 1019 GTTTGGTTTGGTTGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAAAACACA 1078 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 1176 GTTTGGTTTGGTTGTTTGATCACTAACATCAAATTCTCCTCTTGTTTTATAGAAAACACA 1235 Query 1079 CACATGGCATCCATCACTGACCGGTGTAATTGAAGAGAAATTCTACAAAATATGTCAGCT 1138 ||| ||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| Sbjct 1236 CACTTGGCATCCATCACTGACTGGTGTAATTGTAGAAAAATTCTACAAAATATGTCAGCT 1295 Query 1139 GCGTATGAAGGACATGGTTTCTAAGGCTTGCTCAAAACGAGCCACTGAGAGACCGCCATG 1198 ||||||||||||||||||||||||||||||| |||||| | ||| |||| || ||||| Sbjct 1296 GCGTATGAAGGACATGGTTTCTAAGGCTTGCGCAAAACAAACCAATGAGCTTCCACCATG 1355 Query 1199 GATTGAGAAGACATTGTGGAAGGAAATGTGTGAGTATTGGGACACAGAAGAAG-CACTTG 1257 |||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||| Sbjct 1356 GATTGAGAAGACATTGTGGAAGGAAATGTGTGTGTATTGGGACACAGAAGAAGTCA-TTG 1414 Query 1258 CCAAGAGTTCAACCACATCAGCA-GCTCGAATGTCTGACCGTAATGGTCTTGGTCCTCAC 1316 ||||||||| ||||||||| ||| | ||||||||||||||||||||||||||| ||||| Sbjct 1415 CCAAGAGTTAAACCACATCCGCAAG-TCGAATGTCTGACCGTAATGGTCTTGGCCCTCAA 1473 Query 1317 AAGCATGTATCGGGGCCAAAGTCTTTCTTACAAATCGAGCAAGAGATGGTAAGTTACATC 1376 || |||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 1474 AAACATGTATCGGGGACAAAGTCTTTCTTACAAATCGAGTAAGAGATTGTAAGTTACATC 1533 Query 1377 AAGCACTCTTGTTTATTTACATAATGGTTTTCCTTAAGAATTTGAAtttttttGTGAACA 1436 ||||||||||||||||||| | | |||||| |||||| ||||||||||| Sbjct 1534 AAGCACTCTTGTTTATTTA--T--T----------AAGAATCTGAATTGTTTTGTGAACA 1579 Query 1437 ACATTTCAGGAAATTGAGCTGGGAAGACCACCTACTATTGGTGAGATATTCATTAGGACT 1496 ||||||||||||||||||||| |||||| ||||||||||| |||||||||| |||||||| Sbjct 1580 ACATTTCAGGAAATTGAGCTGAGAAGACAACCTACTATTGTTGAGATATTCCTTAGGACT 1639 Query 1497 CATACCAAAAAAGATGGGA-GTTTTGTTGATAGGAAGGCGCAGGAAATTCATGAGGCATA 1555 ||||||||||||||||||| ||| ||||| | |||| ||| ||||||||||||||||| Sbjct 1640 CATACCAAAAAAGATGGGACGTT--GTTGACACGAAGATGCAAGAAATTCATGAGGCATA 1697 Query 1556 TTTGAA-GAACAAGGAAGCTAAGTTGGCTGCCCTTGTGAATGATGAAGGGTCTGATGGTA 1614 |||| | || ||||||||||||||||| | |||||| ||||||||||||||||||||||| Sbjct 1698 TTTGTATGA-CAAGGAAGCTAAGTTGGTTCCCCTTGAGAATGATGAAGGGTCTGATGGTA 1756 Query 1615 CATCCCGTCGATCAGAACTATCTCAAGAGGAGGATGATGAGATCTTCCTTCTGGTAATGt 1674 | |||||||||| |||||||||||||||||| ||||||||||| ||||||| |||||||| Sbjct 1757 CTTCCCGTCGATTAGAACTATCTCAAGAGGATGATGATGAGATTTTCCTTCAGGTAATGT 1816 Query 1675 --tt--t--tttATTATT-A-T-CACTTACTTCATCTTTTAAGAACTAATCCTCTTGTCt 1725 || | ||| || || | | ||||| ||||||||||||||||||||||||||||||| Sbjct 1817 GGTTAATACTTTTTTTTTTAATTCACTTCCTTCATCTTTTAAGAACTAATCCTCTTGTCT 1876 Query 1726 ttttttttGCAGTCAACTGTCACAAACGAGAGAGGGGTATACTTCGGAATGGGAAGCTTA 1785 ||| ||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1877 TTTGTTT-GCATTCAACTGTCACAAACGAGAGAGAGGTATACTTCGGAATGGGAAGCTTA 1935 Query 1786 GGGAGGTACATCAATGGGAAGCGGAAGCACCCAGGAAGCAGTTCTGCTTTCACTTCCTT- 1844 |||||||||||||||| |||||||||| ||||| ||| || || ||||||||||||||| Sbjct 1936 GGGAGGTACATCAATGAGAAGCGGAAGTACCCATGAAACACTTATGCTTTCACTTCCTTT 1995 Query 1845 GCAGTCACAGCTTGAGGAAGCCAACCGCAAGATAGAAGAACAAGCGACTCTCCAAGCACA 1904 ||| |||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 1996 GCAATCACAGTTTGAGGAAGTCAACCGCAAGATAGAAGAACAAGCGACTCTCCAATTACA 2055 Query 1905 TCGGGAGGCAGAGGCATTGCGGGTGAAAGCTGAGCAAGCAGAGATCAAGCGTGTTGCTAA 1964 ||| ||||||||| ||||||||| |||| |||||||||||| ||||||||||||||||| Sbjct 2056 TCGTAAGGCAGAGGAATTGCGGGTAAAAGTTGAGCAAGCAGATATCAAGCGTGTTGCTAA 2115 Query 1965 TGAGCAACAAGCAGAGATCAAACACTTGAGGATGGTGAAGAAGTACTTGACCGAAACTGA 2024 | |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct 2116 TAAGCAACAAACAGAGATCAAACACTTGAGGATGGTGAAGAAGTACTTGACAGAAACTAA 2175 Query 2025 CCCCAAGTTTCTCGCCTTTCTCGAGTCTGCT 2055 ||||| |||||||| || |||||||||||| Sbjct 2176 CCCCATGTTTCTCGAATTCCTCGAGTCTGCT 2206 Score = 387 bits (209), Expect = 3e-106 Identities = 364/436 (83%), Gaps = 22/436 (5%) Strand=Plus/Plus Query 268 TCTCCTCGCGGATCTGGCTCGACTCCATTTCGAGCATCCGGATCGACTCAACCTAGATCT 327 ||||||||| ||||||| ||||||| |||||||||||||| |||||||||||||||||| Sbjct 321 TCTCCTCGCAGATCTGGATCGACTCTGTTTCGAGCATCCGGCTCGACTCAACCTAGATCT 380 Query 328 GGAGGATCTCGTCGGT--TC-A-ACGGGAAGCTTACAATCAGTCTCCAGCGCCGGTTCAA 383 |||||||| || | || | | | | || || || ||||||| | | |||||| Sbjct 381 CGAGGATCTATTC-ATCATCTAGCCTCCACG-TT-GAAACAATCTCCAGAGGCAGTTCAA 437 Query 384 CGGGAAGCCTCCAATCAGTCTCCAGCGCCGGTTCAACCG-GAAGCCTCCAATCCTCCAC- 441 | |||||||||||||||||||||||| |||||||| || ||||| |||||||||| || Sbjct 438 CCTGAAGCCTCCAATCAGTCTCCAGCGGCGGTTCAA-CGAGAAGCATCCAATCCTCTACT 496 Query 442 CTCGGCAGGCGTCAAATCCTCCACCTCGAGCCTCTGTATCACATCACAGCTCTCAAGCTC 501 | || | |||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 497 TTAGG-AAGCGTCAAATCCTCCACCTCGAGTCTTTGTATCACATCACAGCTCTCAAGCTC 555 Query 502 AAAACTCACATGCGGAAGAAGATGAAGATGAGGAAGCTGAG---G---CTGATTATGAAA 555 |||||||||| ||||| |||||||||||||||||||||||| | |||||| ||||| Sbjct 556 AAAACTCACACGCGGAGGAAGATGAAGATGAGGAAGCTGAGTTTGAGGCTGATTTTGAAA 615 Query 556 GGGAATCAACTCTCCCTGAAGATTCGCTTGCTACTCTCCATGAGTTGCTT-CTTCAGCCA 614 ||||||||||| |||||||||||| |||||| ||||| ||||||||||| | |||||| Sbjct 616 GGGAATCAACTATCCCTGAAGATTTGCTTGCAACTCTATATGAGTTGCTTGCC-CAGCCA 674 Query 615 GGACGTGAGAAGTTTACAACGGTCATCTCTCCCACATTTGAGCCTGGAAC-CTATTGGTA 673 | | |||||| | |||||||||||||||||| | ||| |||||| ||| |||| ||| Sbjct 675 AGCCATGAGAAATATACAACGGTCATCTCTCCTAAATT-GAGCCTCAAACTCTAT-GGTT 732 Query 674 AGCTGAGTAGATTAGG 689 ||||||||| |||||| Sbjct 733 AGCTGAGTATATTAGG 748 Score = 255 bits (138), Expect = 9e-67 Identities = 246/294 (84%), Gaps = 24/294 (8%) Strand=Plus/Plus Query 1 ATGAAGACTCGTGGTGGAAAAGGCAAGAGAGG--AA-G--GGG-ATCGAAGATTcccccc 54 ||||||||||||||||| |||||||||||| || | ||| || ||||||| |||| Sbjct 14 ATGAAGACTCGTGGTGG---AGGCAAGAGAGGAAAAGGAAGGGTATAGAAGATT--CCCC 68 Query 55 cAAAATCGACCCACTTCTTCCCAGCCTGTA-CGAGTTG-AATCGAAGACC------TTGA 106 | |||| |||||||||||||||| || | ||||||| ||| ||||||| |||| Sbjct 69 C-AAATAGACCCACTTCTTCCCA-CC-AAATCGAGTTGAAAT-GAAGACCAAGGAGTTGA 124 Query 107 ATCGAAGACCTAGGGGTCTTCCCAGCCAGTACGAGTTCACGCCGGCGAATCGTCAAGCCC 166 ||||| | || ||||| ||||||||||| |||||||||||||||||||||||||||| || Sbjct 125 ATCGACGGCCCAGGGGGCTTCCCAGCCAATACGAGTTCACGCCGGCGAATCGTCAAGTCC 184 Query 167 CACTTCAAGATTCTGAACAAGAGCCGATTGCACAACCTCCAACGGGTCCAACCATCAGGG 226 |||||||||||||||| ||| | ||||||||| |||||||| ||| |||| | |||| Sbjct 185 TGCTTCAAGATTCTGAACGAGATCTGATTGCACATCCTCCAACAAGTCAAACCGTGAGGG 244 Query 227 ACTATCCTCCTCCGACGCAACTTTTCCAGTCAGGCGAAGGATCTCCTCGCGGAT 280 |||||||||||| ||||||||||| |||||||||||||||||||||| | |||| Sbjct 245 ACTATCCTCCTCTGACGCAACTTT-CCAGTCAGGCGAAGGATCTCCTTGTGGAT 297 Score = 87.9 bits (47), Expect = 3e-16 Identities = 52/54 (96%), Gaps = 1/54 (2%) Strand=Plus/Plus Query 666 TAT-TGGTAAGCTGAGTAGATTAGGTTTAGGGTTAATATTGAGTAATGTGTGTG 718 ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 906 TATATGGTAAGCTGAGTAGATTAGGTTTAGGGTTAATATTGAGTAATATGTGTG 959 > AT4G06627.1 | Symbols: | transposable element gene | chr4:3604916-3606209 FORWARD LENGTH=1294 Length=1294 Score = 1515 bits (820), Expect = 0.0 Identities = 1112/1245 (89%), Gaps = 52/1245 (4%) Strand=Plus/Plus Query 843 TTATGTAATTGTAGGTTTGGTCACGACAATGGTAAGCTGACCCGGAAGATCACAAAGGTA 902 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1 TTATGTAATTGTAGGTTTGGTCACGACAATGGTAAGCTGACCCAGAAGATCACAAAGGTA 60 Query 903 TTCACAAACAAGTTTAATGGGCCATATTACAATTGGAGCTGTGTACCTACTGAAAGAAGA 962 |||| |||||||||| ||||||||| ||||| |||||| ||||||||||||||||||||| Sbjct 61 TTCATAAACAAGTTTGATGGGCCATTTTACAGTTGGAGATGTGTACCTACTGAAAGAAGA 120 Query 963 CACAAATACTTCCTCGAATTCGCGGTAAATTAA---C--T-TC-TATT-GTCTGTATCCA 1014 |||| ||||||||||||||||| |||||| ||| | | || |||| ||| | | || Sbjct 121 CACATATACTTCCTCGAATTCGAGGTAAAGTAAGTTCTATCTCTTATTAATCTCT-TACA 179 Query 1015 TTTGGTTTGGTTTGGTTGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAAAA 1074 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 180 TTTGGTTTGGTTTGGTTGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAGTA 239 Query 1075 CACACACATGGCATCCATCACTGACCGGTGTAATTGAAGAGA-AATTCTACAAAATATGT 1133 |||||||||||||||||||| ||||||||||| ||||| | | | |||| ||||||||| Sbjct 240 CACACACATGGCATCCATCAGTGACCGGTGTAGTTGAATA-ATAGTTCTTTAAAATATGT 298 Query 1134 C-AGCTGCGTATGAAGGACATGGTTTCTAAGGCTTGCTCAAAACGAGCCACTGAGAGACC 1192 | | | ||||||||||||||||||||||||||||||| ||| ||| |||| |||| |||| Sbjct 299 CAAAC-GCGTATGAAGGACATGGTTTCTAAGGCTTGCGCAAGACGTGCCAATGAGCGACC 357 Query 1193 GCCATGGATTGAGAAGACATTGTGGAAGGAAATGTGTGAGTATTGGGACACAGAAGAAG- 1251 |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 358 GCCATGGATTGAGAAGACATTGTGGAAGGAAATGTGTGCGTATTGAGACACAGAAGAAGC 417 Query 1252 CACTTGCCAAG-AGTTCAACCACATCAGCAGCTCGAATGTCTGACCGTAATGGTCTTGGT 1310 || || || || |||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 418 CA-TTACC-AGAAGTTCAACCACATCAGTAGCTCGAATGTCTGACCGTAATGGTCTTGGT 475 Query 1311 CCTCACAAGCATGTATCGGGGCCAAAGTCTTTCTTACAAATCGAGCAAGAGATGGTAAGT 1370 |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 476 CCTCACAAACATGTATCGGGGCCAAAGTCTTTCTTACAGATTGAGCAAGAGATGGTAAG- 534 Query 1371 TACATCAAGCACTCTTGTTTATTTACAT-AATGGTTTTCCTTAAGAATTTGAAttttttt 1429 | | | || | ||||||||||| || |||| |||| |||||| | |||||| |||| Sbjct 535 T---T--A-CA-T-TTGTTTATTTA-ATGAATGATTTTTATTAAGAGTCTGAATTGTTTT 585 Query 1430 GTGAACAACATTTCAGGAAATTGAGCTGGGAAGACCACCTACTATTGGTGAGATATTCAT 1489 |||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| | Sbjct 586 GTGAACAACATTTCAGAAAATTGAGCTAGGAAGACCACCTACTATTGGTGAGGTATTCGT 645 Query 1490 TAGGACTCATACCAAAAAAGATGGGAGTTTTGTTGATAGGAAGGCGCAGGAAATTCATGA 1549 || ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 646 TAAGACTCATACCAAAAAAGATGGGACTTTTGTTGATAAGAAGGCGCAGGAAATTCATGA 705 Query 1550 GGCATATTTGAAGAACAAGGAAGCTAAGTTGGCTGCCCTTGTGAATGATGAAGGGTCTGA 1609 |||||||||||||||||||||||||||||||||||||| || ||||||||||||||| || Sbjct 706 GGCATATTTGAAGAACAAGGAAGCTAAGTTGGCTGCCCGTGAGAATGATGAAGGGTCAGA 765 Query 1610 TGGTACATCCCGTCGATCAGAACTATCTC-AAGAGGAGGATGATGAGATCTTCC-T---- 1663 ||||| |||||||||||||||||||||| || ||||||| |||||| |||||| | Sbjct 766 CGGTACTTCCCGTCGATCAGAACTATCTCTAA-AGGAGGAGGATGAGGTCTTCCTTCAGG 824 Query 1664 TC-TGGTAAT-Gt-tt-ttttA-------T-TATTATCACTTACTTCATCTTTTAAG-AA 1710 || |||| | || || ||||| | ||||||||||| ||||||||||| | || Sbjct 825 TCATGGTCTTGGTCTTCTTTTATTTCTTCTCTATTATCACTTGCTTCATCTTTTCTGCAA 884 Query 1711 CTAATCCTCTTGTCtttttttttGCAGTCAACTGTCACAAACGAGAGAGGGGTATACTTC 1770 |||| ||| ||| |||| ||||||||||||| ||||||||||||||||| ||||||| Sbjct 885 -TAAT--TCTCGTC-TTTTGTTTGCAGTCAACTATCACAAACGAGAGAGGGATATACTTT 940 Query 1771 GGAATGGGAAGCTTAGGGAGGTACATCAATGGGAAGCGGAAGCACCCAGGAAGCAGTTCT 1830 ||||||||||||||||||||||||||||||||||||| |||| ||||||| |||| || | Sbjct 941 GGAATGGGAAGCTTAGGGAGGTACATCAATGGGAAGCAGAAGTACCCAGGCAGCAATTTT 1000 Query 1831 GCTTTCACTTCCTTGCAGTCACAGCTTGAGGAAGCCAACCGCAAGATAGAAGAACAAGCG 1890 ||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 1001 GCTTTCACTACCTTGCAATCACAACTTGAGGAAGCCAACCGCAAGATAGAAGAACAAGCG 1060 Query 1891 ACTCTCCAAGCACATCGGGAGGCAGAGGCATTGCGGGTGAAAGCTGAGCAAGCAGAGATC 1950 ||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||| Sbjct 1061 ACTCTCCAAGCACATCGTGAGGTAGAGGCATTGCGCGTGAAAGCTGAGCAAGCAGATATC 1120 Query 1951 AAGCGTGTTGCTAATGAGCAACAAGCAGAGATCAAACACTTGAGGATGGTGAAGAAGTAC 2010 ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1121 AAGCGTGTTGCTATTGAGCAACAAGCAGAGATCAAACACTTGAGGATGGTTAAGAAGTAC 1180 Query 2011 TTGACCGAAACTGACCCCAAGTTTCTCGCCTTTCTCGAGTCTGCT 2055 ||||| ||||||||||||||||||||||| || |||||| ||||| Sbjct 1181 TTGACAGAAACTGACCCCAAGTTTCTCGCATTCCTCGAGACTGCT 1225 > AT1G38140.1 | Symbols: | transposable element gene | chr1:14300842-14302929 FORWARD LENGTH=2088 Length=2088 Score = 455 bits (246), Expect = 8e-127 Identities = 621/790 (79%), Gaps = 73/790 (9%) Strand=Plus/Plus Query 856 GGTTTGGTCACGACAATGGTAAGCTGACCCGGAAGATCACAAAGGTATTCACAAACAAGT 915 |||||||| | ||||| ||| | | || || |||||||||| || || |||||||||| Sbjct 878 GGTTTGGTAAGGACAAGGGT-ATTTTACTAGGTAGATCACAAAAGTTTTTACAAACAAGT 936 Query 916 TTAATGGGCCATATTACAATTGGAGCTGTGTACCTACTGAAAGAAGACACAA-ATACTTC 974 || ||| ||||||||||| |||||| ||||| ||||||| ||||||| | || ||||||| Sbjct 937 TTGATGAGCCATATTACAGTTGGAGATGTGTGCCTACTGCAAGAAGAGA-AAGATACTTC 995 Query 975 CTCGAATTCGCGGTAAATTAACTTCTATTGTCTGTATCCA--TT-T-GGTTTGGTTTGGT 1030 ||||||||| ||| | |||||||| | || | || | || | |||| |||||| Sbjct 996 TTCGAATTCG-GGT-GA--AACTTCTA-TCTC-CTCTCAATTTTCTACTTTTGTTTTGGT 1049 Query 1031 TGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAAAACACACAC-A-TGGCAT 1088 | ||| |||||||||||||||||||| |||||||||| | |||||||| || | ||| || Sbjct 1050 TATTTCATCACTAACATCAAACTCTCTTCTTGTTTTGCAAAAAACACATACAATTGGGAT 1109 Query 1089 CCATCACTGACCGGTGTAATTGAAGAGAAATTCTACAAAATATGTCAGCTGCGTATGAAG 1148 || ||||| || |||| ||||||| |||| ||| || || ||||| ||||||||||| Sbjct 1110 CCCTCACTTACTAGTGTGATTGAAGCCAAATACTATAAGATTTGTCAACTGCGTATGAAA 1169 Query 1149 GACATGGTTTCTAAGGCTTGCTCAAAACGA-GCCACTGAGAG--ACCGCCATGGATTGAG 1205 |||||||||| ||| | || | || | || ||||| ||| | ||||||||| Sbjct 1170 GACATGGTTTGTAA-G--TG-----AGGGAGGTTAC-GAGAGCAACCTCTTTGGATTGAG 1220 Query 1206 AAGACATTGT-GGAAGGAAATGTGTGAGTATTGGGACACAGAAGAAG-CACTTGCCAAGA 1263 || ||||||| |||| ||||||||| | ||||||||||||||||||| || || |||| Sbjct 1221 AACACATTGTGGGAA-GAAATGTGTAACTATTGGGACACAGAAGAAGCCA-AAGCAAAGA 1278 Query 1264 GTTCAACCACATCAGC-AGCTCGAATGTCTGACCGTAATGGTCTTGGTCCTCACAAGCAT 1322 || ||| |||||| | | ||||||||||||||||||||||||||||||||||||||||| Sbjct 1279 TTTTAACTACATCATCTA-CTCGAATGTCTGACCGTAATGGTCTTGGTCCTCACAAGCAT 1337 Query 1323 GTATCGGGGCCA--AAGTCT-TTCTTACAAATCGAGCAAGAGATGGTAAGTT-A--CA-T 1375 |||||||| | | |||| | |||||||||||| | |||||| ||||||||| | || | Sbjct 1338 GTATCGGG-C-ATGAAGT-TGTTCTTACAAATCAAACAAGAGGTGGTAAGTTCAAACACT 1394 Query 1376 C--AAGCACTCTTGTTTA-TTTACATA-ATGGTTT---TCCTTAAGAATTTGAAttt-tt 1427 || || | |||||| ||||| || || | | |||| ||||| |||| ||| || Sbjct 1395 GTGAA-CA-T-TTGTTTTGTTTACTTATATAATATCCATCCT-AAGAAGTTGA-TTTGTT 1449 Query 1428 ttGTGAACAACATTTCAGGAAATTGAGCTGGGAAGACCACCTACTATTGGTGA-GATATT 1486 |||| ||||||||||||||| |||| | | |||||||||||| | | || Sbjct 1450 TTGTTTACAACATTTCAGGAAGTTGA-C--------C----TACTATTGGTGAAGTT-TT 1495 Query 1487 CATTAGGACTCATACCAAAAAAGATGGGAGTTTTGTTGATAGGAAGGCGCAGGAAATTCA 1546 | |||| |||||||||||||||||||||| |||||| |||||||||| | ||||| |||| Sbjct 1496 CCTTAGAACTCATACCAAAAAAGATGGGACTTTTGTCGATAGGAAGGTGGAGGAAGTTCA 1555 Query 1547 TGAGGCATATTTGAAGAACAAGG-AAGCTAAGTTGGCTGCCCTTGTGAATGATGAAGGGT 1605 |||| |||| ||||||||||| || ||||||||| |||||||| ||||||||||||| Sbjct 1556 TGAGTCATAAAAGAAGAACAAGGCAA-CTAAGTTGGTTGCCCTTGAAAATGATGAAGGGT 1614 Query 1606 CTGATGGTAC 1615 ||| ||||| Sbjct 1615 ATGAAGGTAC 1624 > AT2G05647.1 | Symbols: | transposable element gene | chr2:2104362-2104646 REVERSE LENGTH=285 Length=285 Score = 302 bits (163), Expect = 1e-80 Identities = 215/240 (90%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 1809 GAAGCACCCAGGAAGCAGTTCTGCTTTCACTTCCTTGCAGTCACAGCTTGAGGAAGCCAA 1868 |||| |||||| |||||||||| ||||||| ||||||| | |||||||||||||||||| Sbjct 3 GAAGTACCCAGTAAGCAGTTCTTCTTTCACAACCTTGCAATTACAGCTTGAGGAAGCCAA 62 Query 1869 CCGCAAGATAGAAGAACAAGCGACTCTCCAAGCACATCGGGAGGCAGAGGCATTGCGGG- 1927 || ||||||||| |||||||| ||||| ||||||||||| ||||||||||| ||||||| Sbjct 63 CCTCAAGATAGATGAACAAGCTACTCTACAAGCACATCGTGAGGCAGAGGCTTTGCGGGT 122 Query 1928 TGAAAGCTGAGCAAGCAGAGATCAAGCGTGTTGCTAATGAGCAACAAGCAGAGATCAAAC 1987 || |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | Sbjct 123 TG-CAGCTGAGCAAGCAGAGATCAAGCGGGTTGCAAATGAGCAACAAGCAGAGATCAAGC 181 Query 1988 ACTTGAGGATGGTGAAGAAGTACTTGACCGA-AACTGACCCCAAGTTTCTCGCCTTTCTC 2046 ||||||||||||||||||||||||||||| | ||| ||||| || ||||||||||| ||| Sbjct 182 ACTTGAGGATGGTGAAGAAGTACTTGACC-ACAACAGACCCAAATTTTCTCGCCTTCCTC 240 > AT4G08598.1 | Symbols: | transposable element gene | chr4:5480552-5482514 REVERSE LENGTH=1963 Length=1963 Score = 250 bits (135), Expect = 4e-65 Identities = 187/212 (88%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 127 CCCAGCCAGTACGAGTTCACGCCGGCGAATCGTCAAGCC-CCACTTCAAGATTCTGA-AC 184 ||||||||||| || ||||||||| || |||||||| || ||||||||||| |||| | Sbjct 1 CCCAGCCAGTATGATTTCACGCCGCCGGATCGTCAA-CCACCACTTCAAGACCCTGATAG 59 Query 185 AAGAGCCGATTGCACAACCTCCAACGGGTCCAACCATCAGGGACTATCCTCCTCCGACGC 244 || | ||||||||||| |||| |||||| | || |||| ||||||||||||||||||| Sbjct 60 AA-ATCCGATTGCACAGGCTCCGACGGGTGCTACTGTCAGAGACTATCCTCCTCCGACGC 118 Query 245 AACTTTTCCAGTCAGGCGAAGGATCTCCTCGCGGATCTGGCTCGACTCCATTTCGAGCAT 304 |||||||||| |||||||||||||||||| |||||||||| |||| |||||||||||||| Sbjct 119 AACTTTTCCAATCAGGCGAAGGATCTCCTTGCGGATCTGGATCGATTCCATTTCGAGCAT 178 Query 305 CCGGATCGACTCAACCTAGATCTGGAGGATCT 336 ||||||||||||||||||||| |||||||||| Sbjct 179 CCGGATCGACTCAACCTAGATTTGGAGGATCT 210 > AT5G28464.1 | Symbols: | transposable element gene | chr5:10398191-10400049 FORWARD LENGTH=1859 Length=1859 Score = 86.1 bits (46), Expect = 1e-15 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 265 GGATCTCCTCGCGGATCTGGCTCGACTCCATTTCGAGCATCCGGATCGACTCAACCTAGA 324 ||||||||| | || ||| | || |||||||||||||||||||||||||||||| ||||| Sbjct 107 GGATCTCCTTGAGGTTCTAGATCAACTCCATTTCGAGCATCCGGATCGACTCAATCTAGA 166 Query 325 TCTGGAGGAT 334 | |||||||| Sbjct 167 TTTGGAGGAT 176 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 101856905805 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5