BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481446
Length=2055
Score E
Sequences producing significant alignments: (Bits) Value
AT2G12420.1 | Symbols: | transposable element gene | chr2:5027... 1718 0.0
AT4G05505.1 | Symbols: | transposable element gene | chr4:2785... 1709 0.0
AT4G06570.1 | Symbols: | transposable element gene | chr4:3518... 1548 0.0
AT4G06627.1 | Symbols: | transposable element gene | chr4:3604... 1515 0.0
AT1G38140.1 | Symbols: | transposable element gene | chr1:1430... 455 8e-127
AT2G05647.1 | Symbols: | transposable element gene | chr2:2104... 302 1e-80
AT4G08598.1 | Symbols: | transposable element gene | chr4:5480... 250 4e-65
AT5G28464.1 | Symbols: | transposable element gene | chr5:1039... 86.1 1e-15
> AT2G12420.1 | Symbols: | transposable element gene | chr2:5027376-5029321
REVERSE LENGTH=1946
Length=1946
Score = 1718 bits (930), Expect = 0.0
Identities = 1283/1440 (89%), Gaps = 77/1440 (5%)
Strand=Plus/Plus
Query 666 TAT-TGGTAAGCTGAGTAGATTAGG-TTTAGGGTTAATATTGAGTAATGTGTGTGTGTAT 723
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 459 TATATGGTAAGCTGAGTAGATTAGGTTTTAGGGTTAATATTGAGTAATGTGTGTGTATAT 518
Query 724 --CTGCTAAGTAGATTAGGTGTGTATATGGTAAGCTGAGTATATTAGGTTTAGGGTTAAT 781
|||||||| |||| |||||||||||||||||||| ||| |||| |||||||| ||||
Sbjct 519 AGATGCTAAGTTGATTGGGTGTGTATATGGTAAGCTGTGTAGATTACGTTTAGGGGTAAT 578
Query 782 ATTGAGTAATATGTGTGTGTATGGTA-A-GCTGAGTAGATTAGTATAAAGCTTGCTAATT 839
|||||||||||||||| ||||| || | ||| ||| |||||| | ||| ||||||
Sbjct 579 ATTGAGTAATATGTGTATGTAT-ATAGATGCTAAGTTGATTAG-GT----CTT-CTAATT 631
Query 840 GGTTTATGTAATTGTAGGTTTGGTCACGACAATGG----TAAGCTGACCCGGAAGATCAC 895
||||||||||||||||| ||||||||||||||||| |||| ||||| ||||||| |
Sbjct 632 GGTTTATGTAATTGTAGATTTGGTCACGACAATGGTAATTAAGTTGACCTGGAAGATTGC 691
Query 896 AAAGGTATTCACAAACAAGTTTAATGGGCCA-TATTACAATTGGAGCTGTGTACCTACTG 954
|||||||||||||||||||||| |||||||| | ||||| ||||||||||||| ||||||
Sbjct 692 AAAGGTATTCACAAACAAGTTTGATGGGCCATTTTTACAGTTGGAGCTGTGTATCTACTG 751
Query 955 AAAGAAGACACAAATACTTCCTCGAATTCGCGGT-AA-----A-------TTAA-C--TT 998
||| |||||| |||||||||||||||||| | || || | |||| | ||
Sbjct 752 AAA-AAGACATAAATACTTCCTCGAATTCAC-GTAAACTTCTATCTCCTGTTAATCTTTT 809
Query 999 -CTATTGTCTGTATCCATTTGGTTTGGTTTGGTTGTTTGATCACTAACATCAAACTCTCC 1057
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 810 ACTATTGTCTATATCCATTTGGTTTGGTTTCGTTGTTTGATCACTAACATCAAACTCTCC 869
Query 1058 TC-TTGTTTTGTAGAAAACACACACATGGCATCCATCACTGACCGGTGTAATTGAAGAGA 1116
|| || |||||||||||||||||||||| ||||||||||| |||||| ||||||||||||
Sbjct 870 TCTTTTTTTTGTAGAAAACACACACATGACATCCATCACTAACCGGTATAATTGAAGAGA 929
Query 1117 AATTCTACAAAATATGTCAGCTGCGTATGAAGGACATGGTTTCTAAGGCTTGCTCAAAAC 1176
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 930 AATTCTACAAAATATGTTAGCTGCGTATGAAGGACATGGTTTCTAAGGCTTGCTCAAAAT 989
Query 1177 GAGCCACTGAG-AGACCGCCATGGATTG-AGAAGACATTGTGGAAGGAAATGTGTGAGTA 1234
|||||| | || | |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 990 GAGCCAATTAGCA-ACCGCCATGGATTGAAG-AGACATTGTGGAAGGAAATGTGTGAGTA 1047
Query 1235 TTGGGACACAGAAGAAG-CACTTGCCAAGAGTT-CAACCACATCAGCAGCTCGAATGTCT 1292
||| ||||||||||||| || |||||||||||| ||| ||||||||||||||||||||||
Sbjct 1048 TTGAGACACAGAAGAAGCCA-TTGCCAAGAGTTCCAATCACATCAGCAGCTCGAATGTCT 1106
Query 1293 GACCGTAATGGTCTTGGTCCTCACAAGCATGTATCGGGGCCAAAGTCTTTCTTACAAATC 1352
|||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||
Sbjct 1107 GACCGTAATGGTCTTGGTTCTCACAAGCATGTATCAGGGCCAAAGTCTTTCTTATAAATC 1166
Query 1353 GAGCAAGAGATGGTAAGTTACATCAAGCACTCTTGTTTATTTACATAATGGTTTTCCTTA 1412
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1167 GAGCAAGAGATGGTAAGTTACATCAAGCACTCTTGTTTATTTACATAATGTTTTTTCTTA 1226
Query 1413 AGAATTTGAAtt-tt-ttt-GTGAACAACATTTCAGGAAATTGAGCTGGGAAGACCACCT 1469
|||| ||||||| || ||| |||||||||||||||||||||| |||| |||||||||||
Sbjct 1227 AGAAGTTGAATTGTTGTTTTGTGAACAACATTTCAGGAAATTTAGCTCAGAAGACCACCT 1286
Query 1470 ACTATTGGTGAGATATT-CATTAGGACTCATACCAAAAAAGATGGGAGTTTTGTTGATAG 1528
| | ||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1287 AGTGTTGGTGAGATATTTC-TTAGGACTCATACCAAAAAAGATGGGACTTTTGTTGATAG 1345
Query 1529 GAAGGCGCAGGAAATTCATGAGGCATATTTGAAGAACAAGGAAGCTAAGTTGGCTGCCCT 1588
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1346 GAAGGCGTAGGTAATTCATGAGGCATATTTGAAGAACAAGGAAGCTAAGTTGGCTGCCGT 1405
Query 1589 TGTGAATGATGAAGGGTCTGATGGTACATCCCGTCGATCAGAACTATCTCAAGAGGAGGA 1648
|| |||||||||||||||||||||||| |||| | ||||| |||||||||||||| ||||
Sbjct 1406 TGAGAATGATGAAGGGTCTGATGGTACTTCCCATGGATCATAACTATCTCAAGAGAAGGA 1465
Query 1649 TGATGAGATCTTCCTTCTGGTAATGt--tt--t--tttATTA-TT---ATCA-C--TTAC 1695
||||||||||||||||| |||||||| || | ||| || || |||| | ||||
Sbjct 1466 TGATGAGATCTTCCTTCAGGTAATGTGGTTAATCCTTTTTTTCTTTGTATCATCACTTAC 1525
Query 1696 TTCATCTTTTAAGAACTAATCCTCTTGTCtttttttttGCAGTCAACTGTCACAAACGAG 1755
|||||||||||||||||||||||||||||| || | || |||||||||||
Sbjct 1526 TTCATCTTTTAAGAACTAATCCTCTTGTCT---------CA---A-CTATCACAAACGAG 1572
Query 1756 AGAGGGGTATACTTCGGAATGGGAAGCTTAGGGAGGTACATCAATGGGAAGCGGAAGCAC 1815
|||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||
Sbjct 1573 TGAGGCGTATACTTCGGAATGGGAAGCTTAGGGAGGT-CATTAATGGGAAGCGGAAGTAC 1631
Query 1816 CCAGGAAGCAGTTCTGCTTTCACTTCCTTGCAGTCACAGCTTGAGGAAGCCAACCGCAAG 1875
||| ||||||||| |||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 1632 CCAAGAAGCAGTTATGCTTTCACTTCCTTGCAATCACATCTTGAGGAAGCCAATCGCAAG 1691
Query 1876 ATAGAAGAACAAGCGACTCTCCAAGCACATCGGGAGGCAGAGGCATTGCGGGTGAAAGCT 1935
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1692 ATAGAAGAACAAGCAACTCTCCAAGCACATCGTGAGGCAGAGGCATTGCGGGTGAAAGCT 1751
Query 1936 GAGCAAGCAGAGATCAAGCGTGTTGCTAATGAGCAACAAGCAGAGATCAAACACTTGAGG 1995
|||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1752 GAGCAACCAAAGATCAAGCGTGTTGCTAATGAGCAACAAGAAGAGATCAAACACTTGAGG 1811
Query 1996 ATGGTGAAGAAGTACTTGACCGAAACTGACCCCAAGTTTCTCGCCTTTCTCGAGTCTGCT 2055
||||||||||||||||||||| |||||||||| | |||||||| ||| ||||||||||||
Sbjct 1812 ATGGTGAAGAAGTACTTGACCAAAACTGACCCTAGGTTTCTCGTCTTCCTCGAGTCTGCT 1871
> AT4G05505.1 | Symbols: | transposable element gene | chr4:2785708-2787991
FORWARD LENGTH=2284
Length=2284
Score = 1709 bits (925), Expect = 0.0
Identities = 1257/1409 (89%), Gaps = 55/1409 (4%)
Strand=Plus/Plus
Query 679 AGTAGATTAGGTTTAGGGTTAATATTGAGTAATGTGTGTGTGTAT-CTGCTAAGTAGATT 737
||| |||||| | || |||||||||||||||||||||||||||| || | |||| ||||
Sbjct 818 AGTTGATTAGAATAAGAGTTAATATTGAGTAATGTGTGTGTGTATCCT-CAAAGTTGATT 876
Query 738 AGGTGTGT-ATAT-GGTAAGCTGAGTAT-ATTAGGTTTAGGGTTAATATTGAGTAATATG 794
|||||||| |||| ||| | ||| | |||||||| || |||||||||||||||| ||
Sbjct 877 AGGTGTGTAATATATTTAA--TAAGT-TGATTAGGTTAAGCGTTAATATTGAGTAATGTG 933
Query 795 TGTGTGTATGGTAAGCTGAGTAGATTAGTATAAAGCTTGCTAATTGGTTTATGTAATTGT 854
||| | |||| |||| ||| ||| || |||| | ||||||||||||||||||||||
Sbjct 934 TGTATATATGCTAAGTTGATTAGGTTTGTAT--A---TGCTAATTGGTTTATGTAATTGA 988
Query 855 AGGTTTGGTCACGACAATGGTAAGCTGACCCGGAAGATCACAAAGGTATTCACAAACAAG 914
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 989 AGGTTTGGTCACGACAATGGTAAGCTGACCCGGAAGATCACAAAGGTCTTCACAAACAAG 1048
Query 915 TTTAATGGGCCATATTACAATTGGAGCTGTGTACCTACTGAAAGAAGACACAAATACTTC 974
||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1049 TTTAATGGGCCATTTTACAGTTGGAGCTGTGTACCTACTGAAAGAAGACACATATACTTC 1108
Query 975 CTCGAATTCGCGGTAAATTAACTTCTATTGTC-T-GT-A--TC---CATTTGGTTTGGTT 1026
||||||||||| |||||||||||||| | || | | | || ||||||||||||||
Sbjct 1109 CTCGAATTCGCAATAAATTAACTTCTA-TCTCTTATTAATCTCTTACATTTGGTTTGGTT 1167
Query 1027 TGGTTGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAAAACACACACATGGC 1086
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1168 TGGTTGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAGTACACACACATGGC 1227
Query 1087 ATCCATCACTGACCGGTGTAATTGAAGAGAAATTCTACAAAATATGTC-AGCTGCGTATG 1145
||||||||||||| |||||| ||||||| ||||||| |||||||||| | | |||||||
Sbjct 1228 ATCCATCACTGACTGGTGTAGTTGAAGAAAAATTCTTTAAAATATGTCAAAC-GCGTATG 1286
Query 1146 AAGGACATGGTTTCTAAGGCTTGCTCAAAACGAGCCACTGAGAGACCGCCATGGATTGAG 1205
|||||||||||||||||||||||| ||||||| || | |||| |||||||||||||||||
Sbjct 1287 AAGGACATGGTTTCTAAGGCTTGCGCAAAACGTGCAAATGAGCGACCGCCATGGATTGAG 1346
Query 1206 AAGACATTGTGGAAGGAAATGTGTGAGTATTGGGACACAGAAGAAG-CACTTGCCAAGAG 1264
||||||||||||||||||||||||| ||||||||||||| |||||| || ||||||||||
Sbjct 1347 AAGACATTGTGGAAGGAAATGTGTGCGTATTGGGACACAAAAGAAGCCA-TTGCCAAGAG 1405
Query 1265 TTCAACCACATCAGCAGCTCGAATGTCTGACCGTAATGGTCTTGGTCCTCACAAGCATGT 1324
||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||
Sbjct 1406 TTCAACCACATCAGCAGCTTGAATGTCTGACCGTAATGGTCCTGGTCCTCACAAACATGT 1465
Query 1325 ATCGGGGCCAAAGTCTTTCTTACAAATCGAGCAAGAGATGGTAAGTTACATCAAGCACTC 1384
|||||||||||||||||||||||| || ||||||||||| ||||| | | | || |
Sbjct 1466 ATCGGGGCCAAAGTCTTTCTTACAGATTGAGCAAGAGATAGTAAG-T---T--A-CA-T- 1516
Query 1385 TTGTTTATTTACATAATGGTTTTCCTTAAGAATTTGAAtttttttGTGAACAACATTTCA 1444
||||||||||| | |||| |||| |||||| | |||||| |||||||||||||||||||
Sbjct 1517 TTGTTTATTTATAGAATGATTTTTATTAAGAGTCTGAATTGTTTTGTGAACAACATTTCA 1576
Query 1445 GGAAATTGAGCTGGGAAGACCACCTACTATTGGTGAGATATTCATTAGGACTCATACCAA 1504
|||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1577 GGAAATTGAGTTGGGAAGACCACCTACTATTGGTGAGATATTCGTTAAGACTCATACCAA 1636
Query 1505 AAAAGATGGGAGTTTTGTTGATAGGAAGGCGCAGGAAATTCATGAGGCATATTTGAAGAA 1564
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1637 AAAAGATGGGACTTTTGTTGATAGGAAGGCGCATGAAATTCATGAGGCATATTTGAGGAA 1696
Query 1565 CAAGGAAGCTAAGTTGGCTGCCCTTGTGAATGATGAAGGGTCTGATGGTACATCCCGTCG 1624
||||||||||||||||||||||| || ||||||||||||||| |||||||| ||||||||
Sbjct 1697 CAAGGAAGCTAAGTTGGCTGCCCGTGAGAATGATGAAGGGTCAGATGGTACTTCCCGTCG 1756
Query 1625 ATCAGAACTATCTCAAGAGGAGGATGATGAGATCTTCCTTCTGGTAA------------- 1671
||||||||||||||| ||||||||||||||| ||||||||| |||||
Sbjct 1757 ATCAGAACTATCTCAGGAGGAGGATGATGAGGTCTTCCTTCAGGTAATGGTCTTGTTCCT 1816
Query 1672 --TGt-ttttttAT-TATTATCACTTACTTCATCTTTT-AAGAACTAATCCTCTTGTCtt 1726
||| |||||| | ||||||||||| ||||||||||| | || ||||||||||||| |
Sbjct 1817 CTTGTCTTTTTTTTATATTATCACTTGCTTCATCTTTTCTACAA-TAATCCTCTTGTC-T 1874
Query 1727 tttttttGCAGTCAACTGTCACAAACGAGAGAGGGGTATACTTCGGAATGGGAAGCTTAG 1786
||| |||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||
Sbjct 1875 TTTGTTTGCAGTCAACTGTCACAAACAAGAGATGGGTATACTTTGGAATGGGAAGCTTAG 1934
Query 1787 GGAGGTACATCAATGGGAAGCGGAAGCACCCAGGAAGCAGTTCTGCTTTCACTTCCTTGC 1846
|||||||||||||||| ||||||||| ||||||| ||||||||||||||||| ||||||
Sbjct 1935 GGAGGTACATCAATGGAAAGCGGAAGTACCCAGGCTGCAGTTCTGCTTTCACTACCTTGC 1994
Query 1847 AGTCACAGCTTGAGGAAGCCAACCGCAAGATAGAAGAACAAGCGACTCTCCAAGCACATC 1906
||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1995 AGTCACAGCTTTAGGAAGCCAACTGCAAGATAGAAGAACAAGCGACTCTCCAGGCACATC 2054
Query 1907 GGGAGGCAGAGGCATTGCGGGTGAAAGCTGAGCAAGCAGAGATCAAGCGTGTTGCTAATG 1966
| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 2055 GTGAGGCAGAGGCATTGAGGGTGAAAGCTGAGCAAGCAGATATCAAGCGTGTTGCTAATG 2114
Query 1967 AGCAACAAGCAGAGATCAAACACTTGAGGATGGTGAAGAAGTACTTGACCGAAACTGACC 2026
||||||||| |||||||||||||||||||||||| |||||||||||||| |||| ||||
Sbjct 2115 AGCAACAAGAAGAGATCAAACACTTGAGGATGGTTAAGAAGTACTTGACAGAAAGAGACC 2174
Query 2027 CCAAGTTTCTCGCCTTTCTCGAGTCTGCT 2055
||||||||||||| || ||||||||||||
Sbjct 2175 CCAAGTTTCTCGCATTCCTCGAGTCTGCT 2203
Score = 536 bits (290), Expect = 3e-151
Identities = 600/738 (81%), Gaps = 67/738 (9%)
Strand=Plus/Plus
Query 1 ATGAAGAC-TCGTGGTGGAAAAGGCAAGAGAGG-A-AGG--G-G-ATCGAAGATTccccc 53
|||||||| | ||||||| |||||||||||| | ||| | | ||| || ||| |||
Sbjct 1 ATGAAGACAT-GTGGTGG---AGGCAAGAGAGGAAGAGGAAGTGTATCAAACATT--CCC 54
Query 54 ccAAAATCGACCCACTTCTTCCCAGCCTGTACGAGTTGAATCGAAGAC-----C-TTGAA 107
| |||||||||||||||||||||||| || ||||||||| ||||||| | | ||
Sbjct 55 TC-AAATCGACCCACTTCTTCCCAGCCAGTTCGAGTTGAACCGAAGACTAGGGCATCAAA 113
Query 108 TCGAAGACCTAGGGGTCTTCCCAGCCAGTACGAGTTCACGCCGGCGAATCGTCAAGCCCC 167
|||||| || || |||| ||||||||| ||||||||||||| || || ||||| ||||||
Sbjct 114 TCGAAGGCCCAGTGGTCATCCCAGCCACTACGAGTTCACGCTGGTGATTCGTCCAGCCCC 173
Query 168 ACTTCAAGATTCTGAACAAGAGCCGATTGCACAACCTCCAACGGGTCCAACCATCAGGGA 227
|||||||||| |||||| | |||| |||||| ||| ||||||||||| || |||||||
Sbjct 174 GCTTCAAGATTTTGAACATCATCCGACTGCACAGCCTTCAACGGGTCCATCCGTCAGGGA 233
Query 228 CTATCCTCCTCCGACGCAACTTTTCCAGTCAGGCGAAGGATCTCCTCGCGGATCTGG--C 285
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct 234 CTATCCTCCTCCGACGCAACTTTTCCAGTCAGGCGAAGGGTCTCCTCGCGGATCTTGTTC 293
Query 286 TC---G---A-CTC---C-A-T-T-TC--GAGCATCCGGATCGACTCAACCTAGATCTGG 329
|| | | || | | | | | |||||||||| ||||||||||||||||||||
Sbjct 294 TCCTCGTGGATCTGGATCGACTCTGTTTTGAGCATCCGGCTCGACTCAACCTAGATCTGG 353
Query 330 AGGATCTCGTCGGTTCAACGGGAAGC-T-TAC----A-ATCAGTCTCCAGCGCCGGTTCA 382
||||||| || | || || ||| | ||| | | || ||||||||| |||||||
Sbjct 354 AGGATCT-GT---T-CATCGTCTAGCCTCTACGGCGAGA-CAATCTCCAGCGGCGGTTCA 407
Query 383 ACGGGAA-GCCTCCAATCAGTCTCCAGCGCCGGTTCAACCG-GAAGCCTCCAATCCTCCA 440
| ||| ||||||||||||||| ||||| |||||||| | ||||| |||||||||| |
Sbjct 408 -CAAGAATGCCTCCAATCAGTCTATAGCGCTGGTTCAAC-GAGAAGCATCCAATCCTCTA 465
Query 441 CCTCGGCAGGCGTCAAATCCTCCACCTCGAGCCTCTGTATCACATCACAGCTCTCAAGCT 500
| || ||| || |||||||||| ||||||||||| |||||| ||||||||||||||||||
Sbjct 466 CTTCCGCAAGCCTCAAATCCTCTACCTCGAGCCTATGTATCTCATCACAGCTCTCAAGCT 525
Query 501 CAAAACTCACATGCGGAAGAAGATGAAGATGAGGAAGCTGAG---G---CTGAT-TATGA 553
||||||||||| ||||| |||||||||||||| || |||||| | ||||| | |||
Sbjct 526 CAAAACTCACACGCGGAGGAAGATGAAGATGATGATGCTGAGTTTGTGGCTGATCT-TGA 584
Query 554 AAGGGAATCAACTCTCCCTGAAGATTCGCTTGCTACTCTCCATGAGTTGCTT-CTTCAGC 612
||||||||||||||||||||||| || |||||| | ||| ||||| ||||| | ||||
Sbjct 585 AAGGGAATCAACTCTCCCTGAAGCTTTGCTTGCAAATCTACATGACATGCTTGCC-CAGC 643
Query 613 CAGGACGTGAGAAGTTTACAACGGTCATCTCTCCCACATTTGAGCCTGGAACC-TATTGG 671
|||| |||||||||| ||||||||| ||||||||||||||||||||| |||| ||| ||
Sbjct 644 CAGGCCGTGAGAAGTATACAACGGTTATCTCTCCCACATTTGAGCCTCTAACCGTAT-GG 702
Query 672 TAAGCTGAGTAGATTAGG 689
||||||||| | ||||||
Sbjct 703 TAAGCTGAGAATATTAGG 720
> AT4G06570.1 | Symbols: | transposable element gene | chr4:3518688-3520916
FORWARD LENGTH=2229
Length=2229
Score = 1548 bits (838), Expect = 0.0
Identities = 1234/1411 (87%), Gaps = 84/1411 (6%)
Strand=Plus/Plus
Query 679 AGTAGATTAGGTTTAGGGTTAATATTGAGTAATGTGTGTGTGTATCTGCTAAGTAGATTA 738
||| |||||||| || ||||||||||||||| ||||||| |||||||| |||||
Sbjct 846 AGTTGATTAGGTGAAGCGTTAATATTGAGTAA------TGTGTATATGCTAAGTTGATTA 899
Query 739 GGTGTGTATATGGTAAGCTGAGTATATTAGGTTTAGGGTTAATATTGAGTAATATGTGTG 798
||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 900 GGTTTGTATATGGTAAGCTGAGTAGATTAGGTTTAGGGTTAATATTGAGTAATA--TGTG 957
Query 799 TGTATGGTAAGCTGAGTAGATTAGTATAAAGCTTGCTAATTGGTTTATGTAATTGTAGGT 858
|| | || | | | ||| | |||||||||||||||||||||||||||
Sbjct 958 TG-A--GT----T---T--A-TAG-----A---TGCTAATTGGTTTATGTAATTGTAGGT 996
Query 859 TTGGTCACGACAATGGTAAGCTGACCCGGAAGATCACAAAGGTATTCACAAACAAGTTTA 918
|||||||||| ||||||||| |||||| |||||||||||||||||| | ||||||||||
Sbjct 997 TTGGTCACGAAAATGGTAAGATGACCCAGAAGATCACAAAGGTATTTAAAAACAAGTTTG 1056
Query 919 ATGGGCCATATTACAATTGGAGCTGTGTACCTACTGAAAGAAGACACAAATACTTCCTCG 978
||||||||||||||| |||||||| ||||||||| |||| ||||||||||||||||||||
Sbjct 1057 ATGGGCCATATTACAGTTGGAGCTATGTACCTACAGAAA-AAGACACAAATACTTCCTCG 1115
Query 979 AATTCG-CG----GTAA-----A-----T--TAA---CTTCTATTGTCTGTATCCATTTG 1018
|||||| || ||| | | ||| |||||||||| ||||||||||||
Sbjct 1116 AATTCGCCGTAAATTAACTTTTATCTCCTAGTAATCTCTTCTATTGTTTGTATCCATTTG 1175
Query 1019 GTTTGGTTTGGTTGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAAAACACA 1078
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1176 GTTTGGTTTGGTTGTTTGATCACTAACATCAAATTCTCCTCTTGTTTTATAGAAAACACA 1235
Query 1079 CACATGGCATCCATCACTGACCGGTGTAATTGAAGAGAAATTCTACAAAATATGTCAGCT 1138
||| ||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||
Sbjct 1236 CACTTGGCATCCATCACTGACTGGTGTAATTGTAGAAAAATTCTACAAAATATGTCAGCT 1295
Query 1139 GCGTATGAAGGACATGGTTTCTAAGGCTTGCTCAAAACGAGCCACTGAGAGACCGCCATG 1198
||||||||||||||||||||||||||||||| |||||| | ||| |||| || |||||
Sbjct 1296 GCGTATGAAGGACATGGTTTCTAAGGCTTGCGCAAAACAAACCAATGAGCTTCCACCATG 1355
Query 1199 GATTGAGAAGACATTGTGGAAGGAAATGTGTGAGTATTGGGACACAGAAGAAG-CACTTG 1257
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct 1356 GATTGAGAAGACATTGTGGAAGGAAATGTGTGTGTATTGGGACACAGAAGAAGTCA-TTG 1414
Query 1258 CCAAGAGTTCAACCACATCAGCA-GCTCGAATGTCTGACCGTAATGGTCTTGGTCCTCAC 1316
||||||||| ||||||||| ||| | ||||||||||||||||||||||||||| |||||
Sbjct 1415 CCAAGAGTTAAACCACATCCGCAAG-TCGAATGTCTGACCGTAATGGTCTTGGCCCTCAA 1473
Query 1317 AAGCATGTATCGGGGCCAAAGTCTTTCTTACAAATCGAGCAAGAGATGGTAAGTTACATC 1376
|| |||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1474 AAACATGTATCGGGGACAAAGTCTTTCTTACAAATCGAGTAAGAGATTGTAAGTTACATC 1533
Query 1377 AAGCACTCTTGTTTATTTACATAATGGTTTTCCTTAAGAATTTGAAtttttttGTGAACA 1436
||||||||||||||||||| | | |||||| |||||| |||||||||||
Sbjct 1534 AAGCACTCTTGTTTATTTA--T--T----------AAGAATCTGAATTGTTTTGTGAACA 1579
Query 1437 ACATTTCAGGAAATTGAGCTGGGAAGACCACCTACTATTGGTGAGATATTCATTAGGACT 1496
||||||||||||||||||||| |||||| ||||||||||| |||||||||| ||||||||
Sbjct 1580 ACATTTCAGGAAATTGAGCTGAGAAGACAACCTACTATTGTTGAGATATTCCTTAGGACT 1639
Query 1497 CATACCAAAAAAGATGGGA-GTTTTGTTGATAGGAAGGCGCAGGAAATTCATGAGGCATA 1555
||||||||||||||||||| ||| ||||| | |||| ||| |||||||||||||||||
Sbjct 1640 CATACCAAAAAAGATGGGACGTT--GTTGACACGAAGATGCAAGAAATTCATGAGGCATA 1697
Query 1556 TTTGAA-GAACAAGGAAGCTAAGTTGGCTGCCCTTGTGAATGATGAAGGGTCTGATGGTA 1614
|||| | || ||||||||||||||||| | |||||| |||||||||||||||||||||||
Sbjct 1698 TTTGTATGA-CAAGGAAGCTAAGTTGGTTCCCCTTGAGAATGATGAAGGGTCTGATGGTA 1756
Query 1615 CATCCCGTCGATCAGAACTATCTCAAGAGGAGGATGATGAGATCTTCCTTCTGGTAATGt 1674
| |||||||||| |||||||||||||||||| ||||||||||| ||||||| ||||||||
Sbjct 1757 CTTCCCGTCGATTAGAACTATCTCAAGAGGATGATGATGAGATTTTCCTTCAGGTAATGT 1816
Query 1675 --tt--t--tttATTATT-A-T-CACTTACTTCATCTTTTAAGAACTAATCCTCTTGTCt 1725
|| | ||| || || | | ||||| |||||||||||||||||||||||||||||||
Sbjct 1817 GGTTAATACTTTTTTTTTTAATTCACTTCCTTCATCTTTTAAGAACTAATCCTCTTGTCT 1876
Query 1726 ttttttttGCAGTCAACTGTCACAAACGAGAGAGGGGTATACTTCGGAATGGGAAGCTTA 1785
||| ||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1877 TTTGTTT-GCATTCAACTGTCACAAACGAGAGAGAGGTATACTTCGGAATGGGAAGCTTA 1935
Query 1786 GGGAGGTACATCAATGGGAAGCGGAAGCACCCAGGAAGCAGTTCTGCTTTCACTTCCTT- 1844
|||||||||||||||| |||||||||| ||||| ||| || || |||||||||||||||
Sbjct 1936 GGGAGGTACATCAATGAGAAGCGGAAGTACCCATGAAACACTTATGCTTTCACTTCCTTT 1995
Query 1845 GCAGTCACAGCTTGAGGAAGCCAACCGCAAGATAGAAGAACAAGCGACTCTCCAAGCACA 1904
||| |||||| ||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1996 GCAATCACAGTTTGAGGAAGTCAACCGCAAGATAGAAGAACAAGCGACTCTCCAATTACA 2055
Query 1905 TCGGGAGGCAGAGGCATTGCGGGTGAAAGCTGAGCAAGCAGAGATCAAGCGTGTTGCTAA 1964
||| ||||||||| ||||||||| |||| |||||||||||| |||||||||||||||||
Sbjct 2056 TCGTAAGGCAGAGGAATTGCGGGTAAAAGTTGAGCAAGCAGATATCAAGCGTGTTGCTAA 2115
Query 1965 TGAGCAACAAGCAGAGATCAAACACTTGAGGATGGTGAAGAAGTACTTGACCGAAACTGA 2024
| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 2116 TAAGCAACAAACAGAGATCAAACACTTGAGGATGGTGAAGAAGTACTTGACAGAAACTAA 2175
Query 2025 CCCCAAGTTTCTCGCCTTTCTCGAGTCTGCT 2055
||||| |||||||| || ||||||||||||
Sbjct 2176 CCCCATGTTTCTCGAATTCCTCGAGTCTGCT 2206
Score = 387 bits (209), Expect = 3e-106
Identities = 364/436 (83%), Gaps = 22/436 (5%)
Strand=Plus/Plus
Query 268 TCTCCTCGCGGATCTGGCTCGACTCCATTTCGAGCATCCGGATCGACTCAACCTAGATCT 327
||||||||| ||||||| ||||||| |||||||||||||| ||||||||||||||||||
Sbjct 321 TCTCCTCGCAGATCTGGATCGACTCTGTTTCGAGCATCCGGCTCGACTCAACCTAGATCT 380
Query 328 GGAGGATCTCGTCGGT--TC-A-ACGGGAAGCTTACAATCAGTCTCCAGCGCCGGTTCAA 383
|||||||| || | || | | | | || || || ||||||| | | ||||||
Sbjct 381 CGAGGATCTATTC-ATCATCTAGCCTCCACG-TT-GAAACAATCTCCAGAGGCAGTTCAA 437
Query 384 CGGGAAGCCTCCAATCAGTCTCCAGCGCCGGTTCAACCG-GAAGCCTCCAATCCTCCAC- 441
| |||||||||||||||||||||||| |||||||| || ||||| |||||||||| ||
Sbjct 438 CCTGAAGCCTCCAATCAGTCTCCAGCGGCGGTTCAA-CGAGAAGCATCCAATCCTCTACT 496
Query 442 CTCGGCAGGCGTCAAATCCTCCACCTCGAGCCTCTGTATCACATCACAGCTCTCAAGCTC 501
| || | |||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 497 TTAGG-AAGCGTCAAATCCTCCACCTCGAGTCTTTGTATCACATCACAGCTCTCAAGCTC 555
Query 502 AAAACTCACATGCGGAAGAAGATGAAGATGAGGAAGCTGAG---G---CTGATTATGAAA 555
|||||||||| ||||| |||||||||||||||||||||||| | |||||| |||||
Sbjct 556 AAAACTCACACGCGGAGGAAGATGAAGATGAGGAAGCTGAGTTTGAGGCTGATTTTGAAA 615
Query 556 GGGAATCAACTCTCCCTGAAGATTCGCTTGCTACTCTCCATGAGTTGCTT-CTTCAGCCA 614
||||||||||| |||||||||||| |||||| ||||| ||||||||||| | ||||||
Sbjct 616 GGGAATCAACTATCCCTGAAGATTTGCTTGCAACTCTATATGAGTTGCTTGCC-CAGCCA 674
Query 615 GGACGTGAGAAGTTTACAACGGTCATCTCTCCCACATTTGAGCCTGGAAC-CTATTGGTA 673
| | |||||| | |||||||||||||||||| | ||| |||||| ||| |||| |||
Sbjct 675 AGCCATGAGAAATATACAACGGTCATCTCTCCTAAATT-GAGCCTCAAACTCTAT-GGTT 732
Query 674 AGCTGAGTAGATTAGG 689
||||||||| ||||||
Sbjct 733 AGCTGAGTATATTAGG 748
Score = 255 bits (138), Expect = 9e-67
Identities = 246/294 (84%), Gaps = 24/294 (8%)
Strand=Plus/Plus
Query 1 ATGAAGACTCGTGGTGGAAAAGGCAAGAGAGG--AA-G--GGG-ATCGAAGATTcccccc 54
||||||||||||||||| |||||||||||| || | ||| || ||||||| ||||
Sbjct 14 ATGAAGACTCGTGGTGG---AGGCAAGAGAGGAAAAGGAAGGGTATAGAAGATT--CCCC 68
Query 55 cAAAATCGACCCACTTCTTCCCAGCCTGTA-CGAGTTG-AATCGAAGACC------TTGA 106
| |||| |||||||||||||||| || | ||||||| ||| ||||||| ||||
Sbjct 69 C-AAATAGACCCACTTCTTCCCA-CC-AAATCGAGTTGAAAT-GAAGACCAAGGAGTTGA 124
Query 107 ATCGAAGACCTAGGGGTCTTCCCAGCCAGTACGAGTTCACGCCGGCGAATCGTCAAGCCC 166
||||| | || ||||| ||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 125 ATCGACGGCCCAGGGGGCTTCCCAGCCAATACGAGTTCACGCCGGCGAATCGTCAAGTCC 184
Query 167 CACTTCAAGATTCTGAACAAGAGCCGATTGCACAACCTCCAACGGGTCCAACCATCAGGG 226
|||||||||||||||| ||| | ||||||||| |||||||| ||| |||| | ||||
Sbjct 185 TGCTTCAAGATTCTGAACGAGATCTGATTGCACATCCTCCAACAAGTCAAACCGTGAGGG 244
Query 227 ACTATCCTCCTCCGACGCAACTTTTCCAGTCAGGCGAAGGATCTCCTCGCGGAT 280
|||||||||||| ||||||||||| |||||||||||||||||||||| | ||||
Sbjct 245 ACTATCCTCCTCTGACGCAACTTT-CCAGTCAGGCGAAGGATCTCCTTGTGGAT 297
Score = 87.9 bits (47), Expect = 3e-16
Identities = 52/54 (96%), Gaps = 1/54 (2%)
Strand=Plus/Plus
Query 666 TAT-TGGTAAGCTGAGTAGATTAGGTTTAGGGTTAATATTGAGTAATGTGTGTG 718
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 906 TATATGGTAAGCTGAGTAGATTAGGTTTAGGGTTAATATTGAGTAATATGTGTG 959
> AT4G06627.1 | Symbols: | transposable element gene | chr4:3604916-3606209
FORWARD LENGTH=1294
Length=1294
Score = 1515 bits (820), Expect = 0.0
Identities = 1112/1245 (89%), Gaps = 52/1245 (4%)
Strand=Plus/Plus
Query 843 TTATGTAATTGTAGGTTTGGTCACGACAATGGTAAGCTGACCCGGAAGATCACAAAGGTA 902
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 TTATGTAATTGTAGGTTTGGTCACGACAATGGTAAGCTGACCCAGAAGATCACAAAGGTA 60
Query 903 TTCACAAACAAGTTTAATGGGCCATATTACAATTGGAGCTGTGTACCTACTGAAAGAAGA 962
|||| |||||||||| ||||||||| ||||| |||||| |||||||||||||||||||||
Sbjct 61 TTCATAAACAAGTTTGATGGGCCATTTTACAGTTGGAGATGTGTACCTACTGAAAGAAGA 120
Query 963 CACAAATACTTCCTCGAATTCGCGGTAAATTAA---C--T-TC-TATT-GTCTGTATCCA 1014
|||| ||||||||||||||||| |||||| ||| | | || |||| ||| | | ||
Sbjct 121 CACATATACTTCCTCGAATTCGAGGTAAAGTAAGTTCTATCTCTTATTAATCTCT-TACA 179
Query 1015 TTTGGTTTGGTTTGGTTGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAAAA 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 180 TTTGGTTTGGTTTGGTTGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAGTA 239
Query 1075 CACACACATGGCATCCATCACTGACCGGTGTAATTGAAGAGA-AATTCTACAAAATATGT 1133
|||||||||||||||||||| ||||||||||| ||||| | | | |||| |||||||||
Sbjct 240 CACACACATGGCATCCATCAGTGACCGGTGTAGTTGAATA-ATAGTTCTTTAAAATATGT 298
Query 1134 C-AGCTGCGTATGAAGGACATGGTTTCTAAGGCTTGCTCAAAACGAGCCACTGAGAGACC 1192
| | | ||||||||||||||||||||||||||||||| ||| ||| |||| |||| ||||
Sbjct 299 CAAAC-GCGTATGAAGGACATGGTTTCTAAGGCTTGCGCAAGACGTGCCAATGAGCGACC 357
Query 1193 GCCATGGATTGAGAAGACATTGTGGAAGGAAATGTGTGAGTATTGGGACACAGAAGAAG- 1251
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 358 GCCATGGATTGAGAAGACATTGTGGAAGGAAATGTGTGCGTATTGAGACACAGAAGAAGC 417
Query 1252 CACTTGCCAAG-AGTTCAACCACATCAGCAGCTCGAATGTCTGACCGTAATGGTCTTGGT 1310
|| || || || |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 418 CA-TTACC-AGAAGTTCAACCACATCAGTAGCTCGAATGTCTGACCGTAATGGTCTTGGT 475
Query 1311 CCTCACAAGCATGTATCGGGGCCAAAGTCTTTCTTACAAATCGAGCAAGAGATGGTAAGT 1370
|||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 476 CCTCACAAACATGTATCGGGGCCAAAGTCTTTCTTACAGATTGAGCAAGAGATGGTAAG- 534
Query 1371 TACATCAAGCACTCTTGTTTATTTACAT-AATGGTTTTCCTTAAGAATTTGAAttttttt 1429
| | | || | ||||||||||| || |||| |||| |||||| | |||||| ||||
Sbjct 535 T---T--A-CA-T-TTGTTTATTTA-ATGAATGATTTTTATTAAGAGTCTGAATTGTTTT 585
Query 1430 GTGAACAACATTTCAGGAAATTGAGCTGGGAAGACCACCTACTATTGGTGAGATATTCAT 1489
|||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| |
Sbjct 586 GTGAACAACATTTCAGAAAATTGAGCTAGGAAGACCACCTACTATTGGTGAGGTATTCGT 645
Query 1490 TAGGACTCATACCAAAAAAGATGGGAGTTTTGTTGATAGGAAGGCGCAGGAAATTCATGA 1549
|| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 646 TAAGACTCATACCAAAAAAGATGGGACTTTTGTTGATAAGAAGGCGCAGGAAATTCATGA 705
Query 1550 GGCATATTTGAAGAACAAGGAAGCTAAGTTGGCTGCCCTTGTGAATGATGAAGGGTCTGA 1609
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||
Sbjct 706 GGCATATTTGAAGAACAAGGAAGCTAAGTTGGCTGCCCGTGAGAATGATGAAGGGTCAGA 765
Query 1610 TGGTACATCCCGTCGATCAGAACTATCTC-AAGAGGAGGATGATGAGATCTTCC-T---- 1663
||||| |||||||||||||||||||||| || ||||||| |||||| |||||| |
Sbjct 766 CGGTACTTCCCGTCGATCAGAACTATCTCTAA-AGGAGGAGGATGAGGTCTTCCTTCAGG 824
Query 1664 TC-TGGTAAT-Gt-tt-ttttA-------T-TATTATCACTTACTTCATCTTTTAAG-AA 1710
|| |||| | || || ||||| | ||||||||||| ||||||||||| | ||
Sbjct 825 TCATGGTCTTGGTCTTCTTTTATTTCTTCTCTATTATCACTTGCTTCATCTTTTCTGCAA 884
Query 1711 CTAATCCTCTTGTCtttttttttGCAGTCAACTGTCACAAACGAGAGAGGGGTATACTTC 1770
|||| ||| ||| |||| ||||||||||||| ||||||||||||||||| |||||||
Sbjct 885 -TAAT--TCTCGTC-TTTTGTTTGCAGTCAACTATCACAAACGAGAGAGGGATATACTTT 940
Query 1771 GGAATGGGAAGCTTAGGGAGGTACATCAATGGGAAGCGGAAGCACCCAGGAAGCAGTTCT 1830
||||||||||||||||||||||||||||||||||||| |||| ||||||| |||| || |
Sbjct 941 GGAATGGGAAGCTTAGGGAGGTACATCAATGGGAAGCAGAAGTACCCAGGCAGCAATTTT 1000
Query 1831 GCTTTCACTTCCTTGCAGTCACAGCTTGAGGAAGCCAACCGCAAGATAGAAGAACAAGCG 1890
||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1001 GCTTTCACTACCTTGCAATCACAACTTGAGGAAGCCAACCGCAAGATAGAAGAACAAGCG 1060
Query 1891 ACTCTCCAAGCACATCGGGAGGCAGAGGCATTGCGGGTGAAAGCTGAGCAAGCAGAGATC 1950
||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| |||
Sbjct 1061 ACTCTCCAAGCACATCGTGAGGTAGAGGCATTGCGCGTGAAAGCTGAGCAAGCAGATATC 1120
Query 1951 AAGCGTGTTGCTAATGAGCAACAAGCAGAGATCAAACACTTGAGGATGGTGAAGAAGTAC 2010
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1121 AAGCGTGTTGCTATTGAGCAACAAGCAGAGATCAAACACTTGAGGATGGTTAAGAAGTAC 1180
Query 2011 TTGACCGAAACTGACCCCAAGTTTCTCGCCTTTCTCGAGTCTGCT 2055
||||| ||||||||||||||||||||||| || |||||| |||||
Sbjct 1181 TTGACAGAAACTGACCCCAAGTTTCTCGCATTCCTCGAGACTGCT 1225
> AT1G38140.1 | Symbols: | transposable element gene | chr1:14300842-14302929
FORWARD LENGTH=2088
Length=2088
Score = 455 bits (246), Expect = 8e-127
Identities = 621/790 (79%), Gaps = 73/790 (9%)
Strand=Plus/Plus
Query 856 GGTTTGGTCACGACAATGGTAAGCTGACCCGGAAGATCACAAAGGTATTCACAAACAAGT 915
|||||||| | ||||| ||| | | || || |||||||||| || || ||||||||||
Sbjct 878 GGTTTGGTAAGGACAAGGGT-ATTTTACTAGGTAGATCACAAAAGTTTTTACAAACAAGT 936
Query 916 TTAATGGGCCATATTACAATTGGAGCTGTGTACCTACTGAAAGAAGACACAA-ATACTTC 974
|| ||| ||||||||||| |||||| ||||| ||||||| ||||||| | || |||||||
Sbjct 937 TTGATGAGCCATATTACAGTTGGAGATGTGTGCCTACTGCAAGAAGAGA-AAGATACTTC 995
Query 975 CTCGAATTCGCGGTAAATTAACTTCTATTGTCTGTATCCA--TT-T-GGTTTGGTTTGGT 1030
||||||||| ||| | |||||||| | || | || | || | |||| ||||||
Sbjct 996 TTCGAATTCG-GGT-GA--AACTTCTA-TCTC-CTCTCAATTTTCTACTTTTGTTTTGGT 1049
Query 1031 TGTTTGATCACTAACATCAAACTCTCCTCTTGTTTTGTAGAAAACACACAC-A-TGGCAT 1088
| ||| |||||||||||||||||||| |||||||||| | |||||||| || | ||| ||
Sbjct 1050 TATTTCATCACTAACATCAAACTCTCTTCTTGTTTTGCAAAAAACACATACAATTGGGAT 1109
Query 1089 CCATCACTGACCGGTGTAATTGAAGAGAAATTCTACAAAATATGTCAGCTGCGTATGAAG 1148
|| ||||| || |||| ||||||| |||| ||| || || ||||| |||||||||||
Sbjct 1110 CCCTCACTTACTAGTGTGATTGAAGCCAAATACTATAAGATTTGTCAACTGCGTATGAAA 1169
Query 1149 GACATGGTTTCTAAGGCTTGCTCAAAACGA-GCCACTGAGAG--ACCGCCATGGATTGAG 1205
|||||||||| ||| | || | || | || ||||| ||| | |||||||||
Sbjct 1170 GACATGGTTTGTAA-G--TG-----AGGGAGGTTAC-GAGAGCAACCTCTTTGGATTGAG 1220
Query 1206 AAGACATTGT-GGAAGGAAATGTGTGAGTATTGGGACACAGAAGAAG-CACTTGCCAAGA 1263
|| ||||||| |||| ||||||||| | ||||||||||||||||||| || || ||||
Sbjct 1221 AACACATTGTGGGAA-GAAATGTGTAACTATTGGGACACAGAAGAAGCCA-AAGCAAAGA 1278
Query 1264 GTTCAACCACATCAGC-AGCTCGAATGTCTGACCGTAATGGTCTTGGTCCTCACAAGCAT 1322
|| ||| |||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 TTTTAACTACATCATCTA-CTCGAATGTCTGACCGTAATGGTCTTGGTCCTCACAAGCAT 1337
Query 1323 GTATCGGGGCCA--AAGTCT-TTCTTACAAATCGAGCAAGAGATGGTAAGTT-A--CA-T 1375
|||||||| | | |||| | |||||||||||| | |||||| ||||||||| | || |
Sbjct 1338 GTATCGGG-C-ATGAAGT-TGTTCTTACAAATCAAACAAGAGGTGGTAAGTTCAAACACT 1394
Query 1376 C--AAGCACTCTTGTTTA-TTTACATA-ATGGTTT---TCCTTAAGAATTTGAAttt-tt 1427
|| || | |||||| ||||| || || | | |||| ||||| |||| ||| ||
Sbjct 1395 GTGAA-CA-T-TTGTTTTGTTTACTTATATAATATCCATCCT-AAGAAGTTGA-TTTGTT 1449
Query 1428 ttGTGAACAACATTTCAGGAAATTGAGCTGGGAAGACCACCTACTATTGGTGA-GATATT 1486
|||| ||||||||||||||| |||| | | |||||||||||| | | ||
Sbjct 1450 TTGTTTACAACATTTCAGGAAGTTGA-C--------C----TACTATTGGTGAAGTT-TT 1495
Query 1487 CATTAGGACTCATACCAAAAAAGATGGGAGTTTTGTTGATAGGAAGGCGCAGGAAATTCA 1546
| |||| |||||||||||||||||||||| |||||| |||||||||| | ||||| ||||
Sbjct 1496 CCTTAGAACTCATACCAAAAAAGATGGGACTTTTGTCGATAGGAAGGTGGAGGAAGTTCA 1555
Query 1547 TGAGGCATATTTGAAGAACAAGG-AAGCTAAGTTGGCTGCCCTTGTGAATGATGAAGGGT 1605
|||| |||| ||||||||||| || ||||||||| |||||||| |||||||||||||
Sbjct 1556 TGAGTCATAAAAGAAGAACAAGGCAA-CTAAGTTGGTTGCCCTTGAAAATGATGAAGGGT 1614
Query 1606 CTGATGGTAC 1615
||| |||||
Sbjct 1615 ATGAAGGTAC 1624
> AT2G05647.1 | Symbols: | transposable element gene | chr2:2104362-2104646
REVERSE LENGTH=285
Length=285
Score = 302 bits (163), Expect = 1e-80
Identities = 215/240 (90%), Gaps = 4/240 (2%)
Strand=Plus/Plus
Query 1809 GAAGCACCCAGGAAGCAGTTCTGCTTTCACTTCCTTGCAGTCACAGCTTGAGGAAGCCAA 1868
|||| |||||| |||||||||| ||||||| ||||||| | ||||||||||||||||||
Sbjct 3 GAAGTACCCAGTAAGCAGTTCTTCTTTCACAACCTTGCAATTACAGCTTGAGGAAGCCAA 62
Query 1869 CCGCAAGATAGAAGAACAAGCGACTCTCCAAGCACATCGGGAGGCAGAGGCATTGCGGG- 1927
|| ||||||||| |||||||| ||||| ||||||||||| ||||||||||| |||||||
Sbjct 63 CCTCAAGATAGATGAACAAGCTACTCTACAAGCACATCGTGAGGCAGAGGCTTTGCGGGT 122
Query 1928 TGAAAGCTGAGCAAGCAGAGATCAAGCGTGTTGCTAATGAGCAACAAGCAGAGATCAAAC 1987
|| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 123 TG-CAGCTGAGCAAGCAGAGATCAAGCGGGTTGCAAATGAGCAACAAGCAGAGATCAAGC 181
Query 1988 ACTTGAGGATGGTGAAGAAGTACTTGACCGA-AACTGACCCCAAGTTTCTCGCCTTTCTC 2046
||||||||||||||||||||||||||||| | ||| ||||| || ||||||||||| |||
Sbjct 182 ACTTGAGGATGGTGAAGAAGTACTTGACC-ACAACAGACCCAAATTTTCTCGCCTTCCTC 240
> AT4G08598.1 | Symbols: | transposable element gene | chr4:5480552-5482514
REVERSE LENGTH=1963
Length=1963
Score = 250 bits (135), Expect = 4e-65
Identities = 187/212 (88%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 127 CCCAGCCAGTACGAGTTCACGCCGGCGAATCGTCAAGCC-CCACTTCAAGATTCTGA-AC 184
||||||||||| || ||||||||| || |||||||| || ||||||||||| |||| |
Sbjct 1 CCCAGCCAGTATGATTTCACGCCGCCGGATCGTCAA-CCACCACTTCAAGACCCTGATAG 59
Query 185 AAGAGCCGATTGCACAACCTCCAACGGGTCCAACCATCAGGGACTATCCTCCTCCGACGC 244
|| | ||||||||||| |||| |||||| | || |||| |||||||||||||||||||
Sbjct 60 AA-ATCCGATTGCACAGGCTCCGACGGGTGCTACTGTCAGAGACTATCCTCCTCCGACGC 118
Query 245 AACTTTTCCAGTCAGGCGAAGGATCTCCTCGCGGATCTGGCTCGACTCCATTTCGAGCAT 304
|||||||||| |||||||||||||||||| |||||||||| |||| ||||||||||||||
Sbjct 119 AACTTTTCCAATCAGGCGAAGGATCTCCTTGCGGATCTGGATCGATTCCATTTCGAGCAT 178
Query 305 CCGGATCGACTCAACCTAGATCTGGAGGATCT 336
||||||||||||||||||||| ||||||||||
Sbjct 179 CCGGATCGACTCAACCTAGATTTGGAGGATCT 210
> AT5G28464.1 | Symbols: | transposable element gene | chr5:10398191-10400049
FORWARD LENGTH=1859
Length=1859
Score = 86.1 bits (46), Expect = 1e-15
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 265 GGATCTCCTCGCGGATCTGGCTCGACTCCATTTCGAGCATCCGGATCGACTCAACCTAGA 324
||||||||| | || ||| | || |||||||||||||||||||||||||||||| |||||
Sbjct 107 GGATCTCCTTGAGGTTCTAGATCAACTCCATTTCGAGCATCCGGATCGACTCAATCTAGA 166
Query 325 TCTGGAGGAT 334
| ||||||||
Sbjct 167 TTTGGAGGAT 176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101856905805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5