BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481448
Length=1231
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25910.2 | Symbols: | 3'-5' exonuclease domain-containing p... 1982 0.0
> AT2G25910.2 | Symbols: | 3'-5' exonuclease domain-containing
protein / K homology domain-containing protein / KH domain-containing
protein | chr2:11049055-11052066 REVERSE LENGTH=1422
Length=1422
Score = 1982 bits (1073), Expect = 0.0
Identities = 1182/1235 (96%), Gaps = 5/1235 (0%)
Strand=Plus/Plus
Query 1 TCCGTTGGTGAATCTGGACAGTCCCCTCAAATAAAACTTGTGAGAGCTGCTTCGTTGCTT 60
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||
Sbjct 2 TCCGTTGGTGAATCTGGACAGTCCCCTCAAATAAAAGTTGTGAGAGCTGTTTCGTCGCTT 61
Query 61 TGATCGAAATGGCGTCGTCTTCTCCAACTCAGCTAGCTCACGTCCCGATTCCTCCTGAAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 62 TGATCGAAATGGCGTCGTCTTCTCCAACTCAGCTAGCTCACGTCCCGATTCCTCCAGAAC 121
Query 121 CAGGGGGAAGGTCACTGACACAAGAAGCTAATGAGCCACAAGTTCCGATTCATATAGTGA 180
|||| |||||||| | ||||||||||||||||||||||| |||||||||| | || ||||
Sbjct 122 CAGGAGGAAGGTCGCCGACACAAGAAGCTAATGAGCCACCAGTTCCGATTTACATTGTGA 181
Query 181 CGGATCC-TTTGCAACTTCCTGCTGATTTCCTAAACCCTTCTCCTGAAAAGAAATTGGTC 239
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 CGGATCCGTTT-CAACTTCCTGCTGATTTCCTAAACCCTTCTCCTGAAAAGAAATTGGTT 240
Query 240 ATTGGTTTTGACTGTGAGGGTGTTGACCTCTGTCGACATGGAAAACTTTGTATCATGCAG 299
|| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 241 ATCGGTTTTGACTGTGAGGGTGTTGACCTCTGCCGACATGGGAAACTTTGTATCATGCAG 300
Query 300 ATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGTGGAGAGGTGCTTATG 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 301 ATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGTGGAGAGGTGATTATG 360
Query 360 AAAGCCTGTAAGCCTGCACTCGAGTCGACTTACATCACAAAAGTTATTCACGATTGCAAA 419
||||| |||||||||||||||||||| | ||||||||| ||||||||||||||||||||
Sbjct 361 AAAGCGTGTAAGCCTGCACTCGAGTCTAATTACATCACGAAAGTTATTCACGATTGCAAG 420
Query 420 CGTGATAGTGAGGCTTTATACTTTCAGTTTGGGATAAGGTTGCACAATGTTGTGGACACT 479
||||| ||||||||| ||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 421 CGTGACAGTGAGGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACT 480
Query 480 CAGATTGCTTATTCTCTGATTGAAGAACAAGAAGGGAGGAGGAGACCTCTAGATGATTAC 539
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 CAGATTGCTTATTCTCTGATTGAAGAACAAGAAGGGCGGAGGAGACCTCTAGATGATTAC 540
Query 540 ATATCGTTTGTTTCACTCCTTGCTGATCCACGTTACTGCGGTATATCTTATGAAGAGAAA 599
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 ATATCGTTTGTTTCACTCCTTGCTGATCCACGTTACTGCGGTATATCCTATGAAGAGAAA 600
Query 600 GAAGAAGTTCGAGTTCTCATGCGCCAGGACCCAAAGTTTTGGACATACAGGCCGATGACT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 GAAGAAGTTCGAGTTCTCATGCGCCAGGACCCAAAGTTTTGGACATACAGGCCTATGACT 660
Query 660 GAGCTCATGATCCGCGCAGCTGCCGATGATGTCCGCTTCCTTCTGTATCTCTATCACAAA 719
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 GAGCTCATGATCCGCGCAGCTGCTGATGATGTCCGCTTCCTTCTGTATCTCTATCACAAA 720
Query 720 ATGATGGGAAAACTAAATCAGCGGTCACTATGGCATCTTGCAGTTCGTGGTGCTTTGTAC 779
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATGATGGGAAAGCTAAATCAGCGGTCACTATGGCATCTTGCAGTTCGTGGTGCTTTGTAC 780
Query 780 TGTCGGTGTCTCTGCTGCATGAACGATGCTGATTTTGCTGATTGGCCAACTGTCCCTCCA 839
||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 781 TGTCGGTGTCTCTGCTGCATGAATGATGCTGATTTTGCTGATTGGCCAACCGTTCCTCCA 840
Query 840 ATTCCAGATAACCTGAAATCAGAAGATCAATGTCTGGAAGAAGAGATCCTGTCAGTTCTT 899
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 841 ATTCCAGATAACCTGAAGTCAGAAGATCAATGTCTTGAAGAAGAGATCCTGTCAGTGCTT 900
Query 900 GATGTTCCACCAGGAAAGATGGGACGTGTGATTGGAAGGAAAGGAGCATCAATCCTCGCC 959
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 901 GATGTTCCACCAGGAAAGATGGGACGTGTGATTGGAAGGAAAGGAGCATCGATCCTCGCC 960
Query 960 ATCAAGGAAGCTTGCAACAGCGCGGAAATTCTAATTGGAGGGGCAAAGGGTCCACCTGAC 1019
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 ATTAAGGAAGCTTGCAACAGCGCGGAAATTCTAATTGGAGGGGCAAAGGGTCCACCTGAT 1020
Query 1020 AAGATATTTGTGATTGGACCGGTGAAAGAAGTGCGTAAGGCGGAGGCTATACTGAGAGGA 1079
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1021 AAGATATTTGTGATTGGACCGGTGAGAGAAGTGCGTAAGGCGGAGGCTATACTGAGAGGA 1080
Query 1080 AGAATGATAGACTATTGAAGGAAATGAGGGTCCTTTGTAATCTGTCTCATTGCCCCTACC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AGAATGATAGACTATTGAAGGAAATGAGGGTCCTTTGTAATCTGTCTCATTGCCCCTATA 1140
Query 1140 AAAAA---TACTAAAACCCTCTTTAAACTTGGAAACTTCATGGTTCAGTATGGACCCGAG 1196
||||| ||||||||||||||| ||||||||||||| |||||||||||| |||||||||
Sbjct 1141 AAAAAAAATACTAAAACCCTCTTAAAACTTGGAAACTCCATGGTTCAGTACGGACCCGAG 1200
Query 1197 AGTGTCGTCCCCTCTTTAATAAAAGTTATATCATT 1231
|| ||||||||||||| ||||||||||| ||||||
Sbjct 1201 AGAGTCGTCCCCTCTTCAATAAAAGTTACATCATT 1235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60491656725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5