BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481449
Length=2601
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25930.1 | Symbols: ELF3, PYK20 | hydroxyproline-rich glycop... 3304 0.0
> AT2G25930.1 | Symbols: ELF3, PYK20 | hydroxyproline-rich glycoprotein
family protein | chr2:11059035-11063324 FORWARD LENGTH=2658
Length=2658
Score = 3304 bits (1789), Expect = 0.0
Identities = 2113/2265 (93%), Gaps = 39/2265 (2%)
Strand=Plus/Plus
Query 371 GTGAAATTAGGTTGTGAATTGT--GTGATGAAGAGAGGGAAAGATGAGGAGAAGATATTG 428
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 399 GTGAAA-AAGGTTGTGAATTGTGAGTGATGAAGAGAGGGAAAGATGAGGAGAAGATATTG 457
Query 429 GAACCAATGTTTCCTCGGCTTCATGTGAATGATGCAGATAAAGGAGGGCCTAGAGCTCCT 488
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 GAACCTATGTTTCCTCGGCTTCATGTGAATGATGCAGATAAAGGAGGGCCTAGAGCTCCT 517
Query 489 CCTAGAAACAAGATGGCTCTTTATGAGCAGCTTAGTATTCCTTCTCAGAGGTTTGGTGAT 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 CCTAGAAACAAGATGGCTCTTTATGAGCAGCTTAGTATTCCTTCTCAGAGGTTTGGTGAT 577
Query 549 CATGGAAC--T---TT-GCGTAGTAACAACACAAGCACTCTAGTTCATCCTGGACCATCT 602
|||||||| | || ||||||||||||||||||||| | ||||||||||||||||||
Sbjct 578 CATGGAACGATGAATTCTCGTAGTAACAACACAAGCACTTTGGTTCATCCTGGACCATCT 637
Query 603 AATCAGCCTTGTGGTGTGGAAAGGAACTTATCTGCT-CAGCATCTTGATTCTTCAGCTGC 661
| ||||||||||||||||||||| |||||||||| | |||||||||||||||||||| ||
Sbjct 638 AGTCAGCCTTGTGGTGTGGAAAGAAACTTATCTG-TCCAGCATCTTGATTCTTCAGCCGC 696
Query 662 AAACCAAGCAACTGAGAAGTTTGTCTCCCAAATGTCCTTCATGGAAAATGTGAGATCTGC 721
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 697 AAACCAAGCAACTGAGAAGTTTGTCTCCCAAATGTCCTTCATGGAAAATGTGAGATCTTC 756
Query 722 GGGACAGCACGATCAGAGGAAAATGGTGAGAGAGGAAGAAGATTTCGCAGTTCCAGTGTA 781
|| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 757 GGCACAGCATGATCAGAGGAAAATGGTGAGAGAGGAAGAAGATTTTGCAGTTCCAGTATA 816
Query 782 TATTAACTCAAGAAGATCTGAGTGTCATGGCAGAAACAAGACTGGCATTGAGAAGGAAAA 841
||||||||||||||||||| ||| ||||||||||| ||||| ||| ||||||||||||||
Sbjct 817 TATTAACTCAAGAAGATCTCAGTCTCATGGCAGAACCAAGAGTGGTATTGAGAAGGAAAA 876
Query 842 ACATACCCCATTGGTGGAACCTAGCTCTTGTAACTCCATTCAATTTCAAGAAGTGAATC- 900
||| |||||| |||||| |||||||||| | ||||||||| |||||||||||||||||
Sbjct 877 ACACACCCCAATGGTGGCACCTAGCTCTCATCACTCCATTCGATTTCAAGAAGTGAATCA 936
Query 901 GCACAGGCGCAATTCAAAAC---------G-TAC--GTTCAAAACCTGAGGTTAGGGATC 948
| |||||| ||| |||||| | ||| ||||||||||||| ||||||||||
Sbjct 937 G-ACAGGCTCAAAGCAAAACGTATGTTTGGCTACTTGTTCAAAACCTGAAGTTAGGGATC 995
Query 949 AGGTTAAGGCGAAGGCAAAGTCAGGTGGCTTTGTAATCTCTTTAGATTTATCAGTCACAG 1008
|||| |||||||| |||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 996 AGGTCAAGGCGAATGCAAGGTCAGGTGGCTTTGTAATCTCTTTAGATGTATCAGTCACAG 1055
Query 1009 AGGAAATTGATCTCGAAAAATCAGCATCGAGTTATGACAGAGTAAATGATTGTAATGCTT 1068
|||| ||||||||||||||||||||||| ||| |||| ||||||||||||| ||||||||
Sbjct 1056 AGGAGATTGATCTCGAAAAATCAGCATCAAGTCATGATAGAGTAAATGATTATAATGCTT 1115
Query 1069 CCTTGAGACAAGAGTCTAGAAATCAGTTATATCGAGATGGTGGCGAAACTCGTGTGAAGG 1128
|||||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||||
Sbjct 1116 CCTTGAGACAAGAGTCTAGAAATCGGTTATACCGAGATGGTGGCAAAACTCGTCTGAAGG 1175
Query 1129 ACATTGATAATGGAGCTGAATCTCACTTGGAAACGGAAAGTCATTCAGAAGAGGGTCATG 1188
||| |||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||
Sbjct 1176 ACACTGATAATGGAGCTGAATCTCACTTGGCAACGGAAAATCATTCACAAGAGGGTCATG 1235
Query 1189 GCAGTCCTGAAGACATTGATACTGGTCGTGAATACAGCAGAAGCAGAGGATGCGCCTCTC 1248
||||||||||||||||||||| || |||||||||||||| |||||||| |||||||||||
Sbjct 1236 GCAGTCCTGAAGACATTGATAATGATCGTGAATACAGCAAAAGCAGAGCATGCGCCTCTC 1295
Query 1249 AGCAGCAGATAAATGAAGAGGCAAGTGATGACGTTTCTGATGATTCGATGGTGGATTCTA 1308
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 TGCAGCAGATAAATGAAGAGGCAAGTGATGACGTTTCTGATGATTCGATGGTGGATTCTA 1355
Query 1309 TATCCAGCATGGATGTCTCTCCCGATGACGTTGTGGGAATATTAGGTCAAAAACGTTTCT 1368
|||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1356 TATCCAGCATAGATGTCTCTCCCGATGATGTTGTGGGTATATTAGGTCAAAAACGTTTCT 1415
Query 1369 GGAGAGCAAGGAAAGCTATTGCCAATCAACAAAGAGTATTTGCGGTTCAACTATTTGAGT 1428
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1416 GGAGAGCAAGGAAAGCCATTGCCAATCAACAAAGAGTATTTGCTGTTCAACTATTTGAGT 1475
Query 1429 TGCACAGACTAATTAAGGTTCAAAAACTTATTGCTGCATCACCGGATCTCTTGCTCGATG 1488
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476 TGCACAGACTGATTAAGGTTCAAAAACTTATTGCTGCATCACCGGATCTCTTGCTCGATG 1535
Query 1489 AGATCAATTTTCTTGGAAAAGTTTCTGCTAAAAGCTATCCAGTGAAGAAGCTCCTACCAT 1548
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1536 AGATCAGTTTTCTTGGAAAAGTTTCTGCTAAAAGCTATCCAGTGAAGAAGCTCCTTCCAT 1595
Query 1549 CAGAATTTCTGGTAAAGCCTCCTCTACCACATGTTGTTGTCAAACAAAGGGGCGACTCGG 1608
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1596 CAGAATTTCTGGTAAAGCCTCCTCTACCACATGTTGTCGTCAAACAAAGGGGTGACTCGG 1655
Query 1609 AGAAGACTGACCAACATAAAATGGAAAGCTCAGCCGAGAATGTAGTTGGGAGGTTGTCAA 1668
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1656 AGAAGACTGACCAACATAAAATGGAAAGCTCAGCTGAGAACGTAGTTGGGAGGTTGTCAA 1715
Query 1669 ACCAAGGTCATCATCAACAATCCAACTACATGCCTTTTGCGAGCAACCCACCCGCTTCAC 1728
| |||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||
Sbjct 1716 ATCAAGGTCATCATCAACAATCCAACTACATGCCTTTTGCAAACAACCCACCGGCTTCAC 1775
Query 1729 CAGCTGCAAATGGATATTGCTATCCTCCTCAGCCTCCTCCTTCAGG-AA--ATCAGCAAT 1785
| ||| ||||||||||||||| |||||||||||||||||||||||| || |||||||||
Sbjct 1776 CGGCTCCAAATGGATATTGCTTTCCTCCTCAGCCTCCTCCTTCAGGAAATCATCAGCAAT 1835
Query 1786 GGTTGATCCCTGTAATGTCTCCTTCAGAAGGGCTGATATACAAGCCTCACCAAGGTATGG 1845
|||||||||||||||||||||| || ||||| ||||||||||||||||||| ||||||||
Sbjct 1836 GGTTGATCCCTGTAATGTCTCCCTCGGAAGGACTGATATACAAGCCTCACCCAGGTATGG 1895
Query 1846 GACACACGGGGCATTATGGAGGGTATTATGGTCATTATATGCCTACACCGATGGTAATGC 1905
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1896 CACACACGGGGCATTATGGAGGATATTATGGTCATTATATGCCTACACCAATGGTAATGC 1955
Query 1906 CTCAATATCACCCCGGCATGGGATTCCCACCTCCTGGTAATGGCTACTTCCCTCCATATG 1965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1956 CTCAATATCACCCCGGCATGGGATTCCCACCTCCTGGTAATGGCTACTTCCCTCCATATG 2015
Query 1966 GAATTATGCCCACCATGATGAACCCTTATTGTTCAGGCcaacagcaacaacaacaacaac 2025
|||| ||||||||||| |||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct 2016 GAATGATGCCCACCATAATGAACCCATATTGTTCAAGCCAACAACAACAACAACAACAAC 2075
Query 2026 CCAATGACCAAATGAACCAGTTTGGGCATCCCGGAAATCTTCAGAACA-CC--CAACAAC 2082
||||||| ||||||||||||||||| ||||| |||||||||||||||| || |||||||
Sbjct 2076 CCAATGAGCAAATGAACCAGTTTGGACATCCTGGAAATCTTCAGAACACCCAACAACAAC 2135
Query 2083 AACAGAGCTCTGTA-AATGAAGCTGCTGCACAGCAACATCAACAGCCAACAAAGTCTTAT 2141
||||||| |||| | |||||| ||||| |||||||||| |||||||||||||||||||||
Sbjct 2136 AACAGAGATCTG-ATAATGAACCTGCTCCACAGCAACAGCAACAGCCAACAAAGTCTTAT 2194
Query 2142 CCGCGGGCTAGAAAGAGCAGGCAAGGGGGCACGGGAAGCAGTCCAAGTGGCCCACATGGA 2201
||||| || |||||||||||||||||| |||| ||||||||||||||||| ||||| |||
Sbjct 2195 CCGCGAGCAAGAAAGAGCAGGCAAGGGAGCACAGGAAGCAGTCCAAGTGGGCCACAGGGA 2254
Query 2202 ATCTCTAGTAGCAAGTCCTTTCGGCCATTCTCAGCTGTTGATGAGGATAGCAAAATCAAC 2261
|||||| ||||||||||||||||||||||| |||| ||||||||||| ||||| ||||||
Sbjct 2255 ATCTCTGGTAGCAAGTCCTTTCGGCCATTCGCAGCCGTTGATGAGGACAGCAACATCAAC 2314
Query 2262 AATGCACCTGAGCAAATGATGACAAC-A--ACGACGACGACAAGAACAACTGTTACTCAG 2318
|||||||||||||||| ||||||||| | || |||||||||||||||||||||||||||
Sbjct 2315 AATGCACCTGAGCAAACGATGACAACAACCACAACGACGACAAGAACAACTGTTACTCAG 2374
Query 2319 ACAACAAGAGATGGGGGAGGAGTGACGAGAGTGATAAAGGTGGTACCTCACAATGCGAAG 2378
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 2375 ACAACAAGAGATGGGGGAGGAGTGACGAGAGTGATAAAGGTGGTACCTCACAACGCAAAG 2434
Query 2379 CTCGCAAGTGAGAATGCTGCCAGGATTTTTCAGTCAATACAAGAAGAACGTAAACGCTAT 2438
||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 2435 CTCGCGAGTGAGAATGCTGCCAGAATTTTCCAGTCAATACAAGAAGAACGTAAACGCTAT 2494
Query 2439 GACTCCTCTAAGCCTTAATCCTCTCTGTCCGTATTGTACTCAGATATGTATTTTACAAAA 2498
|||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 2495 GACTCCTCTAAGCCTTAATCCTCTCTATGCGTATTGTACTT-GATATGTATTTTACAAAA 2553
Query 2499 GTAGAAAAATTGTGATAGATGTTATC-TCAATATATGTACCATGTAAACGTATTATGGTG 2557
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2554 TTAGAAAAATTGTGATAGATGTTATCCTCAATATATGTACCATGTAAACGTATTATGGTG 2613
Query 2558 TAAGCCTCATTTGTATGTGTTAAAT-GTCTTAAAGCCTTGAAATC 2601
|||||||||||| |||||||||| | |||||||||||||||||||
Sbjct 2614 TAAGCCTCATTTATATGTGTTAATTTGTCTTAAAGCCTTGAAATC 2658
Score = 427 bits (231), Expect = 2e-118
Identities = 340/389 (87%), Gaps = 21/389 (5%)
Strand=Plus/Plus
Query 1 ATCTTTTTGGGCTCCACTTTTCCTATCTCTTTTTGCCCGTTTCCTCTATCCTCTCTCTCC 60
|||||||||||||||||||||||||||||||||||||| ||||||| | |||| | |
Sbjct 1 ATCTTTTTGGGCTCCACTTTTCCTATCTCTTTTTGCCCCTTTCCTC--T-CTCTGT-T-- 54
Query 61 CCACAAGTCATCTTCTTCTTCCTCCTCTGAATCTCTGGTTCCTTTTTGCTCTCTCTACTA 120
||||||||||||||||| | |||||||||||| | ||||||||||||||||||||||
Sbjct 55 -CACAAGTCATCTTCTTC--CTTCCTCTGAATCT-T-GTTCCTTTTTGCTCTCTCTACTT 109
Query 121 AATTCACCGACTCTGTTACTCGATTAGCAAGGTG-AAACTCACTTGGGTTTTGTTTGATT 179
||||||| |||||||| ||||||||| | | || |||||||||| ||||||||||||||
Sbjct 110 GATTCACCCACTCTGTTTCTCGATTAGTACGTTGAAAACTCACTTTGGTTTTGTTTGATT 169
Query 180 TCTCTTTAGTCCtttttttttttAATTTCATTTTCTCTGA-----TTGGTGGTGAGATCT 234
||||||||| | | ||||| ||||| |||||||||| |||||||||||||||
Sbjct 170 CCTCTTTAGT-C---TGTTTTTCGATTTCGTTTTCTCTGATTGGTTTGGTGGTGAGATCT 225
Query 235 CTATCTTAGTCGGTCCTTTGGGTTAAGATATTTCATTTGATTGGTGGGTTTGTTTTATTG 294
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 CTATCGTAGTTTGTCCTTTGGGTTAAGATATTTCATTTGATTGGTGGGTTTGTTTTATTG 285
Query 295 AAGCTTCTTGTTACGAAAGTTGGAGTCTTTTTCAATTTTTAGGTTAAATTATTGAGAGAA 354
|||||| ||||| |||||||||||||||| ||| |||||||||| ||||||| ||||||
Sbjct 286 AAGCTTATTGTTGTGAAAGTTGGAGTCTTTCTCAGTTTTTAGGTTGAATTATTAAGAGAA 345
Query 355 AAGGAAGATTTTTGGTGTGAAATTAGGTT 383
| ||||||||||||||||||| |||||||
Sbjct 346 AGGGAAGATTTTTGGTGTGAAGTTAGGTT 374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129129711282
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5