BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481453
Length=246
Score E
Sequences producing significant alignments: (Bits) Value
AT4G07526.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 333 4e-91
AT3G33528.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 311 2e-84
AT3G43880.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 222 1e-57
> AT4G07526.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G33528.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:4358652-4360099 REVERSE LENGTH=768
Length=768
Score = 333 bits (180), Expect = 4e-91
Identities = 232/255 (91%), Gaps = 11/255 (4%)
Strand=Plus/Plus
Query 1 ATGGATGATAGTGAAGAATTCTCAGAAGTTCCTGATCTAAGT-AAGTGGTTTTCGAGTTA 59
|||| ||||||| ||||||||||||||||||||||||||||| || |||| ||||||||
Sbjct 430 ATGGGTGATAGTCAAGAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTG 488
Query 60 TGTCTATGAGTCACCGATGTTGGATACAAGTGATGGTCTTGA------GTTTCTTGGAGA 113
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 489 TGTCTATGAGTCACCGATGATGGATACAAGTGATGGTCTTGAGTTTGCGTTTCTTGGAGA 548
Query 114 AAGTAAAGGTACAAAGGAAATGGAATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAGTC 173
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 549 AAGTAAAGGTAGAAAGGAAATGGAATTAGTCTCTTCTCAGGCTAAAGTTATGTCTCATTC 608
Query 174 GCAGGTTGAGTTTTC---AGATATAATGAATCTCGTCGTTGAGGACAGTGAGATAGATGA 230
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 GCAGATTGAGTTTTCAGAAGATATAATGAATCTCGTCGTTGAGGACAGTGAGATAGATGA 668
Query 231 AGACTGCAGTATTTG 245
|||| |||| ||||
Sbjct 669 AGACAACAGTCTTTG 683
> AT3G33528.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT4G07526.3);
Has 57 Blast hits to 57 proteins in 2 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:14082795-14084346
REVERSE LENGTH=765
Length=765
Score = 311 bits (168), Expect = 2e-84
Identities = 228/255 (89%), Gaps = 11/255 (4%)
Strand=Plus/Plus
Query 1 ATGGATGATAGTGAAGAATTCTCAGAAGTTCCTGATCTAAGT-AAGTGGTTTTCGAGTTA 59
|||| ||||||| ||||||||||||||||||||||||||||| || |||| |||||||||
Sbjct 403 ATGGGTGATAGTCAAGAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTA 461
Query 60 TGTCTATGAGTCACCGATGTTGGATACAAGTGATGGTCTT--G--AG--TTTCTTGGAGA 113
| ||||||||||||||||| |||||||||||||||||||| | | |||||||||||
Sbjct 462 TATCTATGAGTCACCGATGATGGATACAAGTGATGGTCTTGGGTTTGCTTTTCTTGGAGA 521
Query 114 AAGTAAAGGTACAAAGGAAATGGAATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAGTC 173
||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 522 AAGTAAAAGTATAAAGGAAATGGAATTAGTCTCTTCTCACGCTAAAGATATGTCTCAGTC 581
Query 174 GCAGGTTGAGTTTTC---AGATATAATGAATCTCGTCGTTGAGGACAGTGAGATAGATGA 230
|| |||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 582 CCAAATTGAGTTTTCAGAAGATATTATGAATCTCGTCGTTGAGGACAGTGAGATAGATGA 641
Query 231 AGACTGCAGTATTTG 245
|||| |||| ||||
Sbjct 642 AGACAACAGTCTTTG 656
> AT3G43880.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G07526.3);
Has 32 Blast hits to 32 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15738173-15738616
REVERSE LENGTH=264
Length=264
Score = 222 bits (120), Expect = 1e-57
Identities = 161/179 (90%), Gaps = 9/179 (5%)
Strand=Plus/Plus
Query 76 ATGTTGGATACAAGTGATGGTCTTGA----G--TTTCTTGGAGAAAGTAAAGGTACAAAG 129
||| |||||||||| |||||||||| | ||||||||||||| |||||||||||||
Sbjct 1 ATGATGGATACAAGCAATGGTCTTGAGTTTGCTTTTCTTGGAGAAATTAAAGGTACAAAG 60
Query 130 GAAATGGAATTAGTCTCTTCTCAGGCTAAAGATATGTCTCAGTCGCAGGTTGAGTTTTCA 189
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 61 GAAATGGAATTAGTCTCTTCTGAGGCTAAAGATATGTCTCAGTCGCAAGTTGAGTTTTCA 120
Query 190 GAT-ATA--ATGAATCTCGTCGTTGAGGACAGTGAGATAGATGAAGACTGCAGTATTTG 245
|| ||| ||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 121 GAAGATATTATGAATCTCGTCGTTGAAGAAAGTGAGATAGATGAAGACTGCAGTATTTG 179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11159440278
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5