BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481454
Length=1310
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25980.1 | Symbols: | Mannose-binding lectin superfamily pr... 983 0.0
> AT2G25980.1 | Symbols: | Mannose-binding lectin superfamily
protein | chr2:11077488-11079918 REVERSE LENGTH=1627
Length=1627
Score = 983 bits (532), Expect = 0.0
Identities = 725/811 (89%), Gaps = 41/811 (5%)
Strand=Plus/Plus
Query 486 GTCGACTACGACAAAAACGGAGAAGTGGAAACGCGTCAAGACGGGGATATG-TTAGGAGA 544
||||||||||||||| | ||| ||||||||||||||||||||||||| ||| || |||||
Sbjct 603 GTCGACTACGACAAAGATGGAAAAGTGGAAACGCGTCAAGACGGGGACATGCTT-GGAGA 661
Query 545 AAATAGGGTCCTAGGACAACAAAACGAGTTTGTAGTTGACTATCCATATGAATATGTTAC 604
||||||||||| |||||||| ||||||||||||||| |||||||||||||||||| ||||
Sbjct 662 AAATAGGGTCCAAGGACAACCAAACGAGTTTGTAGTGGACTATCCATATGAATATATTAC 721
Query 605 ATCAATCGAGGGGACCGGTGACATAGGATCTGGCAGTTCAAACCGAGTTAGGTCGTTGAG 664
|||||| || | |||| |||||| || ||||||| | ||||||||||||||||||||||
Sbjct 722 ATCAATAGAAGTGACCTGTGACAAAGTCTCTGGCAATACAAACCGAGTTAGGTCGTTGAG 781
Query 665 TTTCAAGACATCAAAAGACAGAACATCTCCTACATATGGACATAAGGGTGAGCGAACTTT 724
||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||
Sbjct 782 TTTCAAGACATCAAAAGACAGAACATCTCCTACATATGGACGTAAGAGCGAGCGAACTTT 841
Query 725 CGTGTTTGAGAGCAGAGGTAGGGCTCTTGTCGGG------GG--TG-GTT-TT--GCTAT 772
|||||||||||||| ||||||||||||||| ||| || | ||| || |||||
Sbjct 842 CGTGTTTGAGAGCAAAGGTAGGGCTCTTGTTGGGCTCCATGGAAGGTGTTGTTGGGCTAT 901
Query 773 TGATGCTATAGGTGCACATTTTGCTGCGCCTCCTATTCCTCCTCCTCCTCCCACGGAGAA 832
||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 902 TGATGCTCTAGGTGCACATTTTGGTGCGCCTCCTATTCCTCCACCTCCTCCCACGGAGAA 961
Query 833 ACTACAAGGACCAGGTGGTGACAGAGGAGAATCATGGGACGATGGAGCTTTCGACGGTGT 892
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 962 ACTACAAGGATCAGGTGGTGACGGAGGAGAATCATGGGACGATGGAGCTTTCGACGGTGT 1021
Query 893 GAGAAAGATATACGTGGGACAAGGTGAAAATGGTATTGCATCTGTCAAGTTTGTGTATGA 952
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1022 GAGAAAGATATACGTGGGACAAGGTGAGAATGGTATCGCATCTGTCAAGTTTGTGTATGA 1081
Query 953 CAAGAACAACCGGTTGGTACTAGGAGAAGAGCATGGAAAGCAGACTTTGCTTGGATACGA 1012
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1082 CAAGAACAACCAGTTGGTACTAGGAGAAGAGCATGGAAAGCATACTTTGCTTGGATACGA 1141
Query 1013 AGAGTTCGAGTTGGAGTATCCGAGTGAATACATCACAACAGTGGAGGGATATTATGATAA 1072
||||||||||||||| ||||||||||||||||||||| | || ||||| |||||||||||
Sbjct 1142 AGAGTTCGAGTTGGACTATCCGAGTGAATACATCACAGCGGTAGAGGGTTATTATGATAA 1201
Query 1073 AGTATTTGGAAGTGAATCTTCA--A-----C---C--AA-T--AA-AC--------GAAC 1108
||| ||||| |||||||||||| | | | || | || || ||||
Sbjct 1202 AGTGTTTGGTAGTGAATCTTCAGTAATAGTCATGCTTAAGTTCAAGACCAATAAACGAAC 1261
Query 1109 CTCGCCGCCTTTTGGAATGGATGCTGGCGTTAGCTTCATACTCGGGAAGGAAGGTCACAA 1168
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 CTCCCCGCCTTATGGAATGGATGCTGGCGTTAGCTTCATACTCGGGAAGGAAGGTCACAA 1321
Query 1169 AGTGGTAGGGTTCCATGGAAAATCTAGTCCCGAGCTCTATCAGATTGGGGTCAGTGTCGC 1228
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||
Sbjct 1322 AGTGGTAGGGTTCCATGGAAAAGCTAGTCCCGAGCTCTATCAGATTGGGGTCACTGTTGC 1381
Query 1229 ACCAATCACCAAGTGACG---TCCTTGAACT 1256
||||||||||||||||| ||||||||||
Sbjct 1382 CCCAATCACCAAGTGACGACGTCCTTGAACT 1412
Score = 472 bits (255), Expect = 5e-132
Identities = 303/326 (93%), Gaps = 3/326 (1%)
Strand=Plus/Plus
Query 162 TTTGAGATTAATCATCTCAATGACGAACATCTGGTGTCGGTAAAGGGTTGCTATGATAAC 221
|||||||||||||||||||||| ||||||| ||||||| ||||| |||||||||||||||
Sbjct 246 TTTGAGATTAATCATCTCAATGGCGAACATGTGGTGTCAGTAAAAGGTTGCTATGATAAC 305
Query 222 ATATCTGGTGTGATTCAAGCACTTCAATTCGAAACCAATCAGAGAAGTTCTGAAGTCATG 281
||||| |||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 306 ATATCCGGTGTGATCCAAGCACTTCAATTCGAAACCAATCAAAGGAGTTCTGAAGTCATG 365
Query 282 GGATACGATGACAATGGCAATAACTTTACACTTGAAGTCAGTGGAAACAAAATCACTGGG 341
||||||||||||| ||||| ||| |||||||||||| |||||||||||||||||||||||
Sbjct 366 GGATACGATGACACTGGCACTAAGTTTACACTTGAAATCAGTGGAAACAAAATCACTGGG 425
Query 342 TTCCATGGATCTGCTGAGGCAAACCTAAAATCTCTTGGAGCTTATTTCACACCACTTGCT 401
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||
Sbjct 426 TTCCATGGATCTGCTGACGCAAACCTAAAATCTCTTGGAGCTTATTTCACACCACCTCCT 485
Query 402 CCTATTAAACTGGAATACCAAGGCAGTACTACTGGAGGCAGGCCATGGGACCATGGTATT 461
|||||||||| |||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 486 CCTATTAAACAGGAATACCAAGGTGGTACT---GGAGGCAGCCCATGGGACCATGGTATT 542
Query 462 TACACCGGCGTAAGAAAAGTCTATGT 487
||||||||| ||||||||||||||||
Sbjct 543 TACACCGGCATAAGAAAAGTCTATGT 568
Score = 241 bits (130), Expect = 2e-62
Identities = 150/159 (94%), Gaps = 4/159 (3%)
Strand=Plus/Plus
Query 1 TCTCTCTACTCCAAGCATAAGAGTTCACGATGGCCCAAAAGTTGGAAGCAAAAGGTGG-A 59
|||||||||||||||||||||||||| |||||||||||| |||||| |||||||| || |
Sbjct 19 TCTCTCTACTCCAAGCATAAGAGTTCTCGATGGCCCAAAGGTTGGAGGCAAAAGGCGGAA 78
Query 60 AGTGGAGGGAAACAATGGGATGATGGAGCCGACCATGAAAATGTAACAAAGATACATGTA 119
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 79 AG-GGAGGGAATCAATGGGATGATGGAGCCGACCATGAAAATGTAACAAAGATACATGTA 137
Query 120 CGAGGTGGTCTTGAAGGAAGTC-AATTCATCAAGTTTGA 157
||||||||||||||||||| || ||||||||||||||||
Sbjct 138 CGAGGTGGTCTTGAAGGAA-TCCAATTCATCAAGTTTGA 175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64457499780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5