BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481458
Length=1561
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26030.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 2084 0.0
AT3G19085.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 283 3e-75
> AT2G26030.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr2:11091334-11093156 REVERSE LENGTH=1656
Length=1656
Score = 2084 bits (1128), Expect = 0.0
Identities = 1401/1534 (91%), Gaps = 13/1534 (1%)
Strand=Plus/Plus
Query 36 TCGCCGGTGAGTTCTTCAGACCCAGCTCGATTGCATGATTATTATGTATCTGATTTTGTG 95
||| |||||||||||||||||| ||||||||| |||| ||| ||| |||||||||| |
Sbjct 55 TCGACGGTGAGTTCTTCAGACCAAGCTCGATTACATG---ATTGTGTGTCTGATTTTGGG 111
Query 96 ACCAATTCTGAAACTTTTTGATTCTCTAGGATTTCGTTTCTTGCGATGAATTGCGATAGA 155
| || |||||||||| |||||| || |||||||| |||||||||||||||||||||||||
Sbjct 112 ATCAGTTCTGAAACTATTTGATACTTTAGGATTTTGTTTCTTGCGATGAATTGCGATAGA 171
Query 156 ATCAGCGAATTGCCAGATTCTTTGCTAACTCAAATACTCTCATACCTTCCAACCAAAGAT 215
||| ||||||||||||||||||| ||||||||| |||||||||||||||| |||| ||||
Sbjct 172 ATCTGCGAATTGCCAGATTCTTTACTAACTCAAGTACTCTCATACCTTCCGACCATAGAT 231
Query 216 TCCGTTAAGACTAGCGTTTTATCTAAAAGATGGGAATTTCTCTGGCTTAGGGTTCCTGTT 275
|||||||| || ||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 232 TCCGTTAAAACAAGCGTTTTATCGAAACGATGGGAATTTCTCTGGCTTAGGGTTCCTGTT 291
Query 276 CTTGACTTAAAAGTCAGCAATTTCCCTGAAGAAAACTACGCGAGCTTTATCGACAATTTT 335
|| ||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||
Sbjct 292 CTCGACTTAAAAGTCAGCGATTTCCCTGACGAAAACTACGCAAGCTTTATCGACAATTTT 351
Query 336 CTCGAGTTTAATCGAAATTCACGAATGCGAAAATTCAAGTTGAAGTATGATGAATACACT 395
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CTCGAGTTTAATCGAAAATCACGAATGCGAAAATTCAAGTTGAAGTATGATGAATACACT 411
Query 396 TATGACGATGATCGGTTGGCGGGGTGGGTTGTTACAACGGTTGATCGCGGAATTCAGCAT 455
|| |||||||||||||| || ||||||||||| ||||||||||||||||||||||| |||
Sbjct 412 TACGACGATGATCGGTTAGCTGGGTGGGTTGTAACAACGGTTGATCGCGGAATTCAACAT 471
Query 456 TTGGATGCTAATGGTTTTGAGACTGATATGTGTGTAAGAGAGTTCATGCCTCAAAACATA 515
| |||||||| |||||||||||| |||||||||||||||||||||||||||| || ||
Sbjct 472 CTAGATGCTAAAGGTTTTGAGACTAATATGTGTGTAAGAGAGTTCATGCCTCAGAATATT 531
Query 516 TATAAGAGTAATACATTGGTGTCTTTGGTGCTTGTAACCGTAGGAATCGAGAATCCCGAG 575
|||||| | ||||||||||||||| | |||||||||||||||||||||||||||| |||
Sbjct 532 TATAAGTGCAATACATTGGTGTCTCTAATGCTTGTAACCGTAGGAATCGAGAATCCAGAG 591
Query 576 TTCGTTGTTTCTTTACCGTCTCTTAAGAAAATGCATTTAGAAGATGTTTGGTATTGGGAT 635
||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 592 TTCGTTGTTTCACTACCGTCTCTTAAGATAATGCATTTAGAAGATGTTTGGTATTATGAT 651
Query 636 GATCCTTTGGTCATTGAGAAGGTTATCTCAGGTTGTCCTGTTCTTGAAGATCTTGTATTG 695
||||||||| |||| |||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 652 GATCCTTTGATCATGGAGAAGATTATCTCAGGTTGTCCTGTTCTTGAAGATTTTGTATTG 711
Query 696 ATTAGGGCTATTGATTTTTGTGTTCTAGATGATCTGCGGTTTCTTAAG-GTGAGGTCTAA 754
|||||| |||||||||||||| |||||||| ||||| ||||||| | |||||||||
Sbjct 712 ATTAGGCCTATTGATTTTTGTAATCTAGATGTTCTGCAGTTTCTT-CGTGTGAGGTCTCT 770
Query 755 GAGTCTTAAAAGCTTTCGTCTTGCGTTTGAGTATAGTATGGCTGGTACATATTTTTCGGT 814
|||||||| ||||||||||||| |||||||||||||| | || |||| |||||||||||
Sbjct 771 GAGTCTTAGAAGCTTTCGTCTTACGTTTGAGTATAGTGTTTCTTGTACGTATTTTTCGGT 830
Query 815 TGAGGTTGATGCTCCTAGACTCGAGTATTTGAATTTTAATGATAACCAATCTGATATGAT 874
|||| |||||||||||||||| ||||||||||||||||||||| |||||||||||| |||
Sbjct 831 TGAGATTGATGCTCCTAGACTTGAGTATTTGAATTTTAATGATGACCAATCTGATACGAT 890
Query 875 TGTAGTCAAGAACCTAAATTCTTTATCGATGATCGATATTGATACTGAATTTAATGTTAA 934
||||||||||||| | | |||||| |||||||| |||||||||| |||||||||||||||
Sbjct 891 TGTAGTCAAGAACATGACTTCTTTGTCGATGATTGATATTGATAGTGAATTTAATGTTAA 950
Query 935 GTTTGGCGGCAGTCCTTTGGAACCGGAGGATTTACGCAAGAGAGATATTATCCGTGATTT 994
|||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 951 GTTTGGCGGCAGTCGTTTGGAACCGGGGGATTTACGCAAGAGAGATATCATCCGTGATTT 1010
Query 995 TTTAACCGGGATATCTTGTATAAGAGATATGATCATCTCTCAGCGTACTTTAGAGGTCCT 1054
|||||||| |||||||||| ||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1011 TTTAACCGCGATATCTTGTGTAAGACATATGATCATCTCTCGGCGTACTTTAGAGGTCCT 1070
Query 1055 ATATCTATATTCCAAATTGGGACCGATTCCCAAATTTGATAACTTGTATCGTTTACAAGC 1114
| ||| |||||| || |||| ||| ||||| ||||| ||||||||||| |||||||||||
Sbjct 1071 AGATCGATATTCGAAGTTGGTACCTATTCCGAAATTCGATAACTTGTACCGTTTACAAGC 1130
Query 1115 TGCGTTTTCTAGATCCATGTTCCAGTTGTTGCTTGTCTTTCTTGAGAGCTGCCCGAATCT 1174
|||| ||||| |||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1131 TGCGGTTTCTCGATCCATGTTGCAGTTGTTGCTTGTCTTTCTTGAGAGCTGCCCAAATCT 1190
Query 1175 GGAAAACCTCATCTTGGACTTTGCTGTTTCAACGGAGCCTGAGCAAGATGGACTTACCTA 1234
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1191 TGAAAACCTCATCTTGGACTTTACTGTTTCAACGGAGCCTGAGCAAGATGGACTTACCTA 1250
Query 1235 TGTCCCTCAGTGTTTGTTATCGACTCTGGAGTGTGTTGAGATTAGAGAATTGATTATGGG 1294
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1251 TGTCCCTCAGTGTTTGTTATCGAGTTTGGAGTGTGTTGAGATTAGAGAATTGATTATGGG 1310
Query 1295 AGAAGAAACCGGGAAGAAATTAGTGAGCTATTTTCTCAAGAATTCAGTAGTTCTCCAGAA 1354
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1311 AGAAGAAACCGGGGAGAAATTAGTGAGGTATTTTCTCAAGAATTCAGTAGTTCTCAAGAA 1370
Query 1355 ACTCATTCTGCGTTTC-AAGGATTCTTCGATAGCAACCCAAGATTCAGATATCTTCAAGG 1413
||||||| ||||||| ||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1371 ACTCATTTTGCGTTTAGAAG-ATTCTTCGATAGCAAACCAAGATTCAGATATCTTCAAGG 1429
Query 1414 AGCTTCGTAGTTTCACAAAACGTTTTCGCAGCTGTGAGGT---CATCATTCATTGACAAT 1470
||||| ||| ||||||||| |||| ||||||||||||||| |||||||||||||||||
Sbjct 1430 AGCTTAGTACTTTCACAAAGCGTTCTCGCAGCTGTGAGGTTATCATCATTCATTGACAAT 1489
Query 1471 GTTTA--GAATATCAGTGTAGTGATATTTTGTTATGAAAAATT-GCAATTAGGCCTAGCA 1527
||||| ||| |||| ||||| || ||||||||||||||||| |||||||||| ||||
Sbjct 1490 GTTTATAGAAGATCATTGTAGAAATCTTTTGTTATGAAAAATTTGCAATTAGGCTTAGCC 1549
Query 1528 TTTTCCAGACGTTGGTGTGGATAATATTAACTGT 1561
|||||||||| |||||||||||||||||||||||
Sbjct 1550 TTTTCCAGACATTGGTGTGGATAATATTAACTGT 1583
> AT3G19085.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: F-box/RNI-like/FBD-like domains-containing protein
(TAIR:AT2G26030.3); Has 310 Blast hits to 305 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 310; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr3:6599589-6600584 FORWARD LENGTH=831
Length=831
Score = 283 bits (153), Expect = 3e-75
Identities = 549/729 (75%), Gaps = 71/729 (10%)
Strand=Plus/Plus
Query 744 GTGAGGTCTAAGAGTCTTAAA-AGCTTTCGTCTT-GCGTTTGAGTATAGTATGGCTGGTA 801
||||||||| ||| | ||||| ||||||| | || |||||||||| || || ||||||
Sbjct 94 GTGAGGTCTCAGACT-TTAAAGAGCTTTC-TGTTCGCGTTTGAGTTTAATACCACTGGTA 151
Query 802 CATATTTTTCGGTTGAGGTTGATGCTCCTAG-ACTCGAGTATTTGAATTTTAATGATAAC 860
| |||| | |||||| |||||||||| || |||| ||| | ||| ||| | |||||
Sbjct 152 AAGCTTTTGCAGTTGAGATTGATGCTCC-AGCACTCAAGTGTATGACTTTCAGTGATAGT 210
Query 861 CAATCTGATATGATTGTAG-TCAAGAACCTAAATTCT-TTATCGATGATCGATATTGATA 918
|||||||||| |||||| | | ||||| || |||||| || || ||| ||||||| |||
Sbjct 211 CAATCTGATAAGATTGT-GTTGAAGAATCTGAATTCTCTT-TCCATGGTCGATATCAATA 268
Query 919 CTGAATTTAATGTTAAGTTTGGCGGCAGTCCTTTGGAACCGGAGGATTTACGCAAGAGAG 978
||| ||| || |||||| | | || | |||||| || | | | ||||||
Sbjct 269 GTGACTTTCATCTTAAGTAT-G-GG-AAAACTTTGGGTCC-----A---A-GAAAGAGAA 316
Query 979 ATATTATCCGTGATTTTTTAACCGGGATATCTTGTATAAGAGATATGATCATCTCTCAGC 1038
| ||||||| |||||| | | || || ||| || | ||| |||||||||||||| |||
Sbjct 317 ACGTTATCCGCGATTTTCTCATTGGTATCTCTAGTGTGAGACATATGATCATCTCTAAGC 376
Query 1039 GTACTTTAGAGGTCCTATATCTATATTCCAAATTGGGACCG--A-TTCCCAAATTTGATA 1095
|||| |||||||||| | || ||||||||||||||||| | | |||||||||||||||
Sbjct 377 TTACTCTAGAGGTCCTCTTTCGATATTCCAAATTGGGACGGAAATTTCCCAAATTTGATA 436
Query 1096 ACTTGTA-TCGTTTACAAGCTGCGTTTTCTAGATCCATGTT-CCAGT-TGTTGCTTGTCT 1152
||||| | |||||| ||||| | | |||||||||||||| | | | || | | ||
Sbjct 437 ACTTG-ACTCGTTTGGAAGCTACACTCTCTAGATCCATGTTAGAACTAT-TTCCAT-CCT 493
Query 1153 TTCTTGAGAGCTGCCCGAATCTGGAAAACCTCATCTTGG-ACTTTGCTG-TTTCAACG-G 1209
|||||||||||| |||||| ||| |||| ||||| | || |||| ||| ||| || | |
Sbjct 494 TTCTTGAGAGCTTCCCGAACCTGAAAAATCTCATATAGGTGCTTT-CTGATTT-AA-GAG 550
Query 1210 AGCCTGAGCAAGAT-GGACTTA-CCTATGTCCCTCAGTGTTTGTTATCGACTCT-G-GAG 1265
|| | || || || ||||| || |||| ||||||||| |||||| || ||| | |||
Sbjct 551 AGGCAAAGGAA-ATCAAACTTAGCC-ATGTGCCTCAGTGTATGTTATTGAATCTGGAGAG 608
Query 1266 TG-T--G-----T-TG-AG-AT--T-AG----AGA-ATTGATTAT-GGGAGAAGAAACCG 1305
|| | | | || || || | || ||| | ||||||| | ||||||||||
Sbjct 609 TGTTGAGATCAATCTGCAGTATGGTGAGATCAAGAGAGTGATTATCATG-GAAGAAACCG 667
Query 1306 GGAAGAAATTAGTGAGCTATTTTCTCAAGAATTCAGTAGTTCTC--C-AGAAACTCATTC 1362
|||| || ||||||| |||||||| ||||||||||||||||| | ||||||| ||||
Sbjct 668 TGAAGGAACTAGTGAGATATTTTCTTGAGAATTCAGTAGTTCTCATCAAGAAACTGATTC 727
Query 1363 TGCG-TTTCAAGGATTC-TTCGATAGCAACCCAAGATTCAGATATCTTCAAGGAGCTTCG 1420
|| | ||| || || || ||| | ||||| |||||||||||||||||||||||||||||
Sbjct 728 TGTGTTTTGAA-GA-TCTTTCTAAAGCAAACCAAGATTCAGATATCTTCAAGGAGCTTCT 785
Query 1421 TAGTTTCAC 1429
|| |||||
Sbjct 786 TAAATTCAC 794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77057836575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5