BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481464
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26070.1 | Symbols: RTE1 | Protein of unknown function (DUF7... 1587 0.0
> AT2G26070.1 | Symbols: RTE1 | Protein of unknown function (DUF778)
| chr2:11105672-11107188 REVERSE LENGTH=1055
Length=1055
Score = 1587 bits (859), Expect = 0.0
Identities = 989/1050 (94%), Gaps = 15/1050 (1%)
Strand=Plus/Plus
Query 1 AAGGTTCATTGTACCTTTCTCCAATGTCTTCAATGAATTCCTAAAACTAGAAGAAGCGTT 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 12 AAGGTTCATTGTACCTTTCTCCATTGTCTTCAATGAATTCCTAAAACTAGAAGAAGCGTT 71
Query 61 ACTTTACAAAACCCATTATAAAAATCTCCTCTTTTC-TCATCAAAATCCACAAAGCATCA 119
|||||| |||||| ||||||||||||||||| |||| |||||||| ||||||||| ||
Sbjct 72 ACTTTAGAAAACCAATTATAAAAATCTCCTC-TTTCTTCATCAAATTCCACAAAG---CA 127
Query 120 TCAGTTTCTTCTCCTTCTCCGAGCTCTCGCATCACTTTCATCG-TTTTTCTTTCTCTGCG 178
|||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||
Sbjct 128 TCAGTTTCTTCTCCTTCTCCAAGCTCTCGCATCACTTTCATCGATTTTTC-CTCTCTGCG 186
Query 179 TTGATCCTTAAGCCGTCGGCGTCGGAGTTTCCGACAGGAATCTACAAATGTCACGTGGAA 238
| ||||||| || | ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 187 TCGATCCTTCAGACATCGGCGTCGGAGTTTCCGACAGGAATCTAAAAATGTCACGTGGAA 246
Query 239 GAGGAGTTCCTATGAAGGACCTGAAACGAAGTTATGATGTTGAA-A-ACGG-GGTG---G 292
||||||||||||||| |||||||||||||||||||||||||||| | | || |||| |
Sbjct 247 GAGGAGTTCCTATGATGGACCTGAAACGAAGTTATGATGTTGAAGACAGGGTGGTGTCCG 306
Query 293 TCTCTATGCCATCCATAATCGAAGATGATGATGCTGATCTATGGCCACTACCTGAGATTG 352
| ||||| ||||| |||||||||| |||||| |||||||| |||||||||||||||||||
Sbjct 307 TGTCTATACCATCAATAATCGAAGCTGATGAGGCTGATCTGTGGCCACTACCTGAGATTG 366
Query 353 ATACCAAAAAGTCTAAATTCCCTTGCTGTATAGTTTGGACTCCTCTTCCTGTTGTCTCTT 412
||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 367 ATACCAAGAAGTCGAAATTTCCTTGCTGTATAGTTTGGACTCCTCTTCCTGTTGTCTCTT 426
Query 413 GGTTGGCTCCCTTCATTGGTCATATAGGACTTTGCAGAGAAGATGGAGTCATTTTGGACT 472
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 427 GGTTGGCTCCTTTCATTGGTCATATTGGACTTTGCAGAGAAGATGGAGTCATTTTGGACT 486
Query 473 TTGCTGGATCTAACTTCATCAATGTTGATGATTTTGCATTTGGTCCTCCTGCTCGGTATC 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 487 TTGCTGGATCTAACTTCATCAATGTTGATGATTTTGCATTTGGTCCTCCTGCTCGCTATC 546
Query 533 TCCAACTCGATAGAACCAAGTGTTGCTTACCACCAAATTTGGGTGGGCATACTTGCAAGT 592
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 547 TCCAACTCGATAGAACCAAGTGTTGCTTACCACCAAATATGGGTGGACATACTTGCAAGT 606
Query 593 ATGGATTCACACACACCGATTTTGGAACCGCGCGTACATGGGATAATGCACTGAGCTCGA 652
||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 607 ATGGATTCAAACACACCGACTTTGGAACAGCGCGTACATGGGATAATGCACTGAGCTCGA 666
Query 653 GTACACGTAGCTTTGAGCATAAAACCTACAACCTCTTCACCTGTAACTGCCATTCGTTTG 712
| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 667 GCACACGTAGCTTTGAGCATAAAACCTACAACATCTTCACTTGTAACTGCCATTCGTTTG 726
Query 713 TTGCAAACTGTCTCAACCGTCTTTGCTATGGTGGCTCAATGGAGTGGAATATGGTGAATG 772
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 TTGCAAACTGTTTGAACCGTCTTTGCTATGGTGGCTCAATGGAGTGGAATATGGTGAATG 786
Query 773 TTGCTATTTTACTTATGATCAAAGGGAAATGGATCAGTGTTTCATCAGTAGTCCGGTCAT 832
|||||||||||||||||||||||||||||||||||| || ||||||||||||||| || |
Sbjct 787 TTGCTATTTTACTTATGATCAAAGGGAAATGGATCAATGGTTCATCAGTAGTCCGCTCGT 846
Query 833 TTCTGCCATGTGCTGTGGTCACGTCTTTGGGGGTAGTGCTTGTCGGCTGGCCATTCCTGA 892
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 847 TTCTGCCATGTGCTGTGGTCACGTCTTTGGGGGTGGTGCTTGTCGGCTGGCCATTCCTCA 906
Query 893 TCGGTCTCTCCTCGTTCTCGCTACTACTCTTTGCCTGGTTCATAATTGCTACTTACTGTT 952
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 TCGGTCTCTCTTCGTTCTCGCTACTACTCTTTGCCTGGTTCATAATTGCTACTTACTGTT 966
Query 953 TTAACAACATTATTACTTGAAGCAGTAAGAGAGAAATATAAATATAATGTA-CTACCAAA 1011
|||| ||||| |||||||||||||||| ||||||||||||||||| ||||| | ||||||
Sbjct 967 TTAAGAACATAATTACTTGAAGCAGTATGAGAGAAATATAAATATGATGTATC-ACCAAA 1025
Query 1012 ATTATGTTAATCTTAAGAATTGTTCTCTTT 1041
||||||||||||||||||||||||||||||
Sbjct 1026 ATTATGTTAATCTTAAGAATTGTTCTCTTT 1055
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51037893352
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5