BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481467
Length=1135
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26110.1 | Symbols: | Protein of unknown function (DUF761) ... 1557 0.0
> AT2G26110.1 | Symbols: | Protein of unknown function (DUF761)
| chr2:11120869-11122059 FORWARD LENGTH=1191
Length=1191
Score = 1557 bits (843), Expect = 0.0
Identities = 1083/1189 (91%), Gaps = 56/1189 (5%)
Strand=Plus/Plus
Query 1 ATGTGCTTCTATTTGCTTTCCG-AAAATACCAAACTCACCCATCTCCTTCCTCTTCTCCT 59
|||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||
Sbjct 1 ATGTGCTTCTATTTGCTTTCCGAAAAAAACCAAACGCACCCATCTCCTTCCTCTTCTCCT 60
Query 60 TTTCTCTTCGGAC-AAGAACACAACC-AAAC--AAATCTATGTTAGACATGTCGGAATCT 115
||||||| || || |||||||||||| |||| |||||||||||||| ||||||||||||
Sbjct 61 TTTCTCTCCGAACAAAGAACACAACCAAAACAAAAATCTATGTTAGATATGTCGGAATCT 120
Query 116 GTACTAACGGCGATGTATAGTTGGTTCACACCGACCGTACTATTCGTCTTCCTCAACCTA 175
||||| ||||||||||||||||||||||| ||||| || || |||||||||||||||||
Sbjct 121 GTACTCACGGCGATGTATAGTTGGTTCACTCCGACAGTTCTCTTCGTCTTCCTCAACCTT 180
Query 176 ATGATTGGTACTATCGCCATTAGCTCATCTTTCTCTTCCAAAGCCAACGACCCAAATCAA 235
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 ATGATTGGTACCATCGCCATTAGCTCATCTTTCTCTTCCAAATCCAACGACCCAAATCAA 240
Query 236 ACTCAGATCCAACGCTCTCCTTCCATGATTCATCGCCTCAAATCCATAAACTTCTCTTCT 295
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 ACTCAGATCCAACGCTCTCCTTCCATGATTCATCGTCTCAAATCCATAAACTTCTCTTCT 300
Query 296 TTCACTTCTCCAGACAATTCTCATCTCGAGTTTCCTCCTTCAACACC------CGA-AG- 347
||||||||||||||||| ||||||||||||||||||||||||||||| | | ||
Sbjct 301 TTCACTTCTCCAGACAAGTCTCATCTCGAGTTTCCTCCTTCAACACCTGAAGACAACAGC 360
Query 348 -ACAACAACTCTCACCAACCAGCTTCAATCGAACAGAATCAACCGTTCTTGTCTAGATCT 406
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 AACAACAACTTTCACCAACCAGCTTCAATCGAACAGAATCAACCATTCTTGTCTAGATCT 420
Query 407 CCTTCTGTTCTTCATAGAATCAAATCTTTCAATCTTTACAACTACATTTCTCAAGAACCC 466
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 CCTTCTGTTCTTCACAGAATCAAATCTTTCAATCTTTATAACTACATTTCTCAAGAACCC 480
Query 467 ACCAATATAATCGAAG-TTCCACCACCGTCGGTGACCATAGAGTCAAaacaag---aag- 521
|||||||||||||||| || ||||||||||||||||| ||||| ||||||||| |||
Sbjct 481 ACCAATATAATCGAAGCTT-CACCACCGTCGGTGACCGTAGAGACAAAACAAGAACAAGT 539
Query 522 --aagaac---aagt---acaagaacaagaacaagaagaacagaGTCTTGAAGAGGTTTA 573
|||||| |||| | ||||||||||| ||||||||||||||||||||||||||||
Sbjct 540 ACAAGAACAAGAAGTAAAAGAAGAACAAGAAGAAGAAGAACAGAGTCTTGAAGAGGTTTA 599
Query 574 TAGTAAACTCAATCTAAACCATGTCGCTAGGACAAAATCTGACACTGAACCAGCTGCTGG 633
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TAGTAAACTTAATCTAAACCATGTCGCTAGGACAAAATCTGACACTGAACCAGCTGCTGG 659
Query 634 AATTAGACCTCCTAAGCTTCCAAAGAAGATGAAGAAATCTGCTAGTACCAAATCTACATT 693
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 660 AATTAGACCTCCGAAGCTTCCAAAGAAGATGAAAAAATCTGCTAGTACCAAATCTCCGTT 719
Query 694 CTCTCACTTTCAAGAAGATGAAATCTCCGTTGAGGCTCGCCGTCCTGCGACGGTGAAAGC 753
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 720 CTCTCACTTTCAAGAAGATGAAATCTCCGTGGAGGCTCGCCGTCCTGCGACGGTGAAAGT 779
Query 754 ACCGAGAGTTACGACGGTGGAAGAAGCTGATGAAGAAGTAGATGCTAAAGCTGATGACTT 813
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 780 GCCGAGAGTTACGACGGTGGAAGAAGCTGATGAAGAAGTAGATGCAAAAGCTGATGACTT 839
Query 814 TATCAATCGATTCAAGCATCAGTTGAAGTTACAGAGAATTGATTCCATCACTAAGTATAA 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TATCAATCGATTCAAGCATCAGTTGAAGTTACAGAGAATTGATTCCATCACTAAGTATAA 899
Query 874 GGAGATGGTGAAGAAAAGAAACGACAAGTGATAAAT-GTT-----------TCTTAA--C 919
||||||||||||||||||||||||||||||| |||| | | |||| | |
Sbjct 900 GGAGATGGTGAAGAAAAGAAACGACAAGTGAAAAATTGATAAAAAGAAAACTCTTGAGGC 959
Query 920 TATGTATTAA-T-T-TAT--------GGACCTTTTTGAAAATTCTTAGTTTTGGTTAGCT 968
| | | |||| | | ||| ||||||||||||||||||||| ||||||||||||
Sbjct 960 TGTTTCTTAACTATGTATTAATTTATGGACCTTTTTGAAAATTCTTAATTTTGGTTAGCT 1019
Query 969 TTTCTCAATTTCACATCTTCACTGTAGATTATCCACTGGCTTTTTGTTGCCGGAACTGTT 1028
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TTTTTCAATTTCACATCTTCACTGTAGATTATCCACTGGCTTTTTGTTGCCGGAACTGTT 1079
Query 1029 TCTCGTTTT-CTTTATGACAAGAAAAAGAAAATTCGAGAATCATTATCTTTGTACATGAC 1087
|||| |||| |||||| ||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1080 TCTCTTTTTTCTTTATAACAAGAAAATGAAAATTCGAGAATCTTTATCTTTGTACATGAC 1139
Query 1088 CGAAGG-GTTCTGTAATAAATTTTAGAAATAATGATTCAGGAATCTTGG 1135
| |||| ||| ||||||||||||| |||| |||||||| |||||||||
Sbjct 1140 CCAAGGTGTT-TGTAATAAATTTTCGAAACGATGATTCAAGAATCTTGG 1187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55672404405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5