BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481469
Length=2726
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26140.1 | Symbols: ftsh4 | FTSH protease 4 | chr2:11131578-... 4349 0.0
> AT2G26140.1 | Symbols: ftsh4 | FTSH protease 4 | chr2:11131578-11135345
REVERSE LENGTH=2734
Length=2734
Score = 4349 bits (2355), Expect = 0.0
Identities = 2618/2743 (95%), Gaps = 26/2743 (1%)
Strand=Plus/Plus
Query 1 TGCGTGTCTTCACCTGCTGCACAATTTTCTCTCTCACCCGATAAACCAAACAGGTCTCTC 60
||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1 TGCGTGTCTCCACCTGCTGCACAATTTT-TCTCTCACCCGAT-AACCAAACAGGTCTCTC 58
Query 61 ACGTGTAATTTAGTGTTTTCAAGACTTTAGGGAATAAGATTAGAACGGTTCTT-CCCAAA 119
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 59 ACGTGTAATTTAGTGTTTTTAAGACTTTAGGGAATAAGATTAGAACGGTTCTTCCCCAAA 118
Query 120 CACAAAGAAGAAGTCTTTTGTTTCCGATATAGATCGAGGAACTTCGATTT-TCGGACATT 178
||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 119 CACAACGAAGAAGTCTTTTGTTTCCGATATAGATCGAGGAACTTCGATTTATCAGACATT 178
Query 179 -A-A-C--------AGACACCGTGAAGGAGAGATTTGATTGATGGCTTGGAGGCGCATCA 227
| | | ||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AACACCAATTTTTAAGATATCGTGAAGGAGAGATTTGATTGATGGCTTGGAGGCGCATCA 238
Query 228 TCACCAAGGTTTCGAGTCATGAAAGGGAATTGAGCAGTTTAAGAAGCTTACTTGTTAGAG 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TCACCAAGGTTTCGAGTCATGAAAGGGAATTGAGCAGTTTAAGAAGCTTACTTGTTAGAG 298
Query 288 CTTACTCTTCCTTTCCTAGAGTGGGAGTTACTGGAGCTGTAGGTGGTGGTGGAGCTTCTT 347
||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 299 CTTACTCCTCTTTTCCTAGAGTGGGAGTTACTGGAGCTGTGGGTGGTGGTGGAGCTTCTT 358
Query 348 TACCGCAAACGAGGTTTCAATCGAGTTATGTTGGTAGCTTTGCTCGCAGAGTGCGTGATA 407
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 359 TACCGCGAACGAGGTTTCAATCGAGTTATGTTGGTAGCTTTGCTCGCAGAGTCCGTGATA 418
Query 408 GAGAAGAAGTTAACGAGGTTGCACATCTGAGAGAGCTTTA-TCGGAGAAATGACCCTGAG 466
||||||||||||| |||||||||||||||||||| | ||| ||| |||||||| ||||||
Sbjct 419 GAGAAGAAGTTAATGAGGTTGCACATCTGAGAGAAC-TTATTCGAAGAAATGATCCTGAG 477
Query 467 GCTGTTATCAGAATGTTTGAGAGCCAACCATCTTTGTATTCGAATGCCTCTGCGTTGTCG 526
|||||||||||||||||||| |||||||| |||||| || |||||||||||||||| |||
Sbjct 478 GCTGTTATCAGAATGTTTGAAAGCCAACCTTCTTTGCATGCGAATGCCTCTGCGTTATCG 537
Query 527 GAATACATTAAGGCATTGGTCAAAGTTGATAGGCTGGATCAAAGTGAGCTGGTACGAACA 586
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 538 GAATACATTAAGGCATTGGTTAAAGTTGATAGGCTCGATCAAAGTGAGCTGGTTCGAACA 597
Query 587 TTGCAAAGAGGTATTGCTGGTGTTGCAAGGGAGGAAGAGACTTTTGGAGGTC-TGTCGGC 645
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 598 TTGCAAAGAGGTATTGCTGGTGTTGCAAGGGAGGAAGAGACTTTTGGAGGTCTTG-GGGC 656
Query 646 ATTTAAAAACTTAGGAAAACAAACAAAAGATGGTGTCCTTGGAACTGCTAGTGCACCGAT 705
||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 657 ATTTAGAAACGTAGGAAAACCAACAAAAGATGGTGTCCTTGGAACTGCTAGTGCACCGAT 716
Query 706 CCATACGATATCAACTGAAAGGACTCACTTTAAAGAACAGCTATGGAGTACAATCCGAAC 765
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CCATACGATATCCACAGAAAGGACTCACTTTAAAGAACAGCTATGGAGTACAATCCGAAC 776
Query 766 TATTGCAGTTGGGTTTTTACTCATTTCTGGTATTGGAGCTCTTATCGAGGATAGAGGAAT 825
||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 777 TATTGGAGTTGGTTTTTTACTCATTTCTGGTATTGGAGCTCTTATCGAGGACAGAGGAAT 836
Query 826 TGGCAAAGGACTCGGTTTGCATGAAGAAGTGCAACCTAGTATGGATTCGAGCACCAAATT 885
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 837 TGGCAAAGGACTTGGTTTGCACGAAGAAGTGCAACCTAGTATGGATTCGAGCACCAAATT 896
Query 886 TACTGATGTAAAGGGTGTTGATGAAGCAAAAGCTGAGCTAGAGGAAATTGTGCATTATCT 945
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 897 TTCTGATGTAAAGGGTGTTGATGAAGCAAAGGCTGAGCTAGAGGAAATTGTGCATTATCT 956
Query 946 TCGCGACCCTAAGAGGTTCACTCGTCTGGGCGGAAAGCTTCCTAAGGGTGTGTTGCTTGT 1005
||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 957 TCGCGACCCCAAAAGGTTCACTCGTCTGGGAGGAAAGCTTCCTAAGGGTGTGTTGCTTGT 1016
Query 1006 CGGTCCTCCTGGGACAGGAAAAACTATGCTTGCTAGAGCTATTGCCGGAGAAGCTGGAGT 1065
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1017 CGGTCCTCCTGGGACAGGAAAAACTATGCTTGCTAGAGCTATTGCTGGAGAAGCTGGAGT 1076
Query 1066 GCCTTTCTTCTCCTGCAGTGGTAGTGAATTTGAAGAGATGTTTGTTGGGGTTGGAGCCAG 1125
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1077 GCCTTTCTTCTCCTGCAGTGGTAGTGAGTTTGAAGAGATGTTTGTTGGAGTTGGAGCCAG 1136
Query 1126 AAGAGTGAGAGATCTTTTTAGTGCTGCAAAGAAGTGCTCCCCTTGTATTATATTTATCGA 1185
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1137 AAGAGTGAGAGATCTTTTTAGTGCTGCAAAGAAGTGCTCCCCGTGTATTATATTTATCGA 1196
Query 1186 TGAAATAGATGCTATTGGAGGAAGTCGCAATCCCAAGGATCAGCAATACATGAAGATGAC 1245
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1197 TGAAATAGATGCTATTGGAGGAAGTCGCAATCCCAAGGACCAGCAATACATGAAGATGAC 1256
Query 1246 ATTGAACCAGATGCTTGTTGAGTTGGATGGATTTAAACAGAATGAAGGAATTATTGTGGT 1305
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1257 ATTGAACCAGATGCTCGTTGAGTTGGATGGGTTTAAACAGAATGAAGGAATTATTGTGGT 1316
Query 1306 CGCAGCAACAAATTTCCCAGAGTCATTGGATAAGGCCCTGGTTAGACCTGGGAGGTTTGA 1365
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1317 CGCAGCAACAAATTTCCCAGAGTCTTTGGATAAGGCCCTGGTTAGACCTGGGAGGTTTGA 1376
Query 1366 TCGCCATATTGTTGTACCTAACCCAGACGTTGAAGGTCGACGCCAGATTTTGGAGTCTCA 1425
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1377 TCGTCATATTGTTGTACCTAACCCAGACGTGGAAGGTCGACGCCAGATTTTGGAGTCTCA 1436
Query 1426 CATGTCAAAGGTACTTAAGGCTGAAGATGTTGATTTAATGATCATCGCTAGAGGAACGCC 1485
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1437 CATGTCAAAGGTACTTAAGGCTGAAGATGTCGATTTAATGATCATCGCTAGAGGAACGCC 1496
Query 1486 TGGATTTTCTGGCGCTGATTTGGCGAATCTGGTCAACGTTGCTGCTTTAAAAGCTGCAAT 1545
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1497 TGGATTTTCTGGCGCTGATTTGGCTAATCTGGTCAATGTTGCTGCTTTAAAAGCTGCAAT 1556
Query 1546 GGACGGTTCTAAAGACGTGACAATGTCTGATCTTGAGTTTGCCAAAGACAGAATCATGAT 1605
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 GGACGGTTCTAAAGATGTGACAATGTCTGATCTTGAGTTTGCCAAAGACAGAATCATGAT 1616
Query 1606 GGGAAGTGAGAGAAAATCTGCAGTTATATCTGACGAGTCAAGAAAGCTGACTGCTTTCCA 1665
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1617 GGGAAGTGAGAGGAAATCTGCAGTTATATCTGACGAGTCAAGAAAGCTAACTGCTTTCCA 1676
Query 1666 TGAAGGTGGTCATGCCCTTGTTGCCATCCACACAGAAGGGGCTCTTCCAGTCCACAAAGC 1725
||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 1677 TGAAGGTGGTCATGCCCTTGTTGCCATTCACACCGAAGGTGCTCTTCCAGTCCACAAAGC 1736
Query 1726 AACCATTGTGCCTCGTGGTATGGCTCTTGGCATGGTTTCTCAACTACCAGATAAAGATGA 1785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 AACCATTGTGCCTCGTGGTATGGCTCTTGGCATGGTTTCTCAACTACCAGATAAAGATGA 1796
Query 1786 GACGAGCATTTCTAGGAAACAGATGCTTGCTCGACTTGATGTTTGTATGGGAGGCCGGGT 1845
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1797 GACGAGCATTTCTAGGAAACAGATGCTTGCTAGGCTTGATGTTTGTATGGGAGGCCGGGT 1856
Query 1846 AGCCGAAGAGTTGATTTTTGGGGAAAGTGAGGTAACTTCGGGTGCATCTTCTGATCTTGA 1905
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1857 AGCCGAAGAGTTGATTTTTGGGGAAAGTGAAGTAACTTCGGGTGCATCTTCTGATCTTGA 1916
Query 1906 GCAGGCAACTAAACTCGCTAGAGCGATGGTCACGAAATTCGGTATGAGCAAAGAGGTAGG 1965
||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1917 GCAGGCAACCAAACTCGCGAGAGCAATGGTCACGAAATTCGGTATGAGCAAAGAGGTGGG 1976
Query 1966 TCTTGTGGCACATAACTACGACGACAATGGGAAAAGCATGAGCACCGAGACAAGGCTTCT 2025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1977 TCTTGTGGCACATAACTACGACGACAATGGGAAAAGCATGAGCACCGAGACAAGGCTTCT 2036
Query 2026 CATTGAGAGTGAAGTGAAACAACTTCTGGAAAAGGCTTATAACAATGCGAAAACCATCCT 2085
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 2037 CATTGAGAGTGAAGTGAAACAACTTCTGGAAAAGGCTTATAACAATGCAAAAACAATCCT 2096
Query 2086 CACAGTTTACAACAAAGAGCTTCATGCCCTTGCAAATGCTTTGCTTCAACACGAAACTCT 2145
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2097 CACGGTTTACAACAAAGAGCTTCATGCCCTTGCAAATGCTTTGCTTCAGCACGAAACTCT 2156
Query 2146 GTCCGGTAAGCAGATTAAAGAATTACTTACCGATCTCAACTCTCCACAGCTGCAAAAGCG 2205
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 2157 GTCCGGTAAGCAGATTAAAGAATTGCTTACCGATCTCAACTCTCCACTGCTGCAAAAGCG 2216
Query 2206 TCAAGAAGTAGTTGCAAAGCAAAGCAACCCGGTTCCTCCATCAACCCCTagctcagcatc 2265
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2217 TCAAGAAGTGGTTACAAAGCAAAGCAACCCGGTTCCTCCATCAACCCCTAGCTCAGCATC 2276
Query 2266 atcagcagctgcagcagccgccgcagccgcagccgccgccgcagcagcagctgcaaccgc 2325
||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||| ||
Sbjct 2277 ATCAGCAGCCGCAGCAGCTGCCGCAGCTGCAGCCGCCGCCGCCGCAGCAGCTGCAACAGC 2336
Query 2326 cgcaACCAAAGGTAAAGACATGGCTCCAGTAGGGTCTTGAAAATAAAGGAGCTAGCCTTT 2385
|||||||||||||||||||||||| |||||| || | ||||||||||||||||| |||
Sbjct 2337 CGCAACCAAAGGTAAAGACATGGCGCCAGTA---TCGTAAAAATAAAGGAGCTAGCGTTT 2393
Query 2386 GGTAGAAGAAGGCGTTTTCTTGTATTTGTGTATGCTGGGGTAATTGAATTGGGAATAACT 2445
|||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 2394 GGTAGA-GAAGGCGTTTTCATGTATTTGTGTATGTTGGGGTAATTGAATTGGGAATAACT 2452
Query 2446 CTTTATTTTGAGAGTTTTTAGAATCAATGAGAGGCTGGTGAGAGTTAAGAGTATTAAGCT 2505
|||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||
Sbjct 2453 CTTTATTTTGAGAGTTTTTAGAATCAGTGAGAGGCTGGTGAGGGTTAAGAGCATTAAGCT 2512
Query 2506 TAGGACAATGAGATTAACATCTCAGGTTTTTCGATATCTCTATCTC--ACACACGGAATC 2563
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 2513 TAGGACAATGAGATTAACATCTCAGGTTTTTCTCTATCTCTATCTCGTACACACGGAATC 2572
Query 2564 TCGCTGCGAAATGGTATGTGTTCTCTTTTTCTTTTAATGTTTTCGGAATCTCGTGGGATG 2623
||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||
Sbjct 2573 TCGCTGCGAAATGGTATGTGTTCACTTTTTCTCTAAATGTTTTCGGAATCTCGTGGGATG 2632
Query 2624 TTATTTAGAAGTTTGGCTCGTACAGTTTCAGGTTTACACTAAATTCTAAAGCCTGCTTGT 2683
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2633 TTATTTAGAAGTTTGGCTCGTACAGTTTCAGGTT-ACACTAAATTCTAAAGCCTGCTTGT 2691
Query 2684 AAGACTTGATGCAATAAGTTTAATAATCTCTAGTTACTGGTCT 2726
|||||| ||||||||| ||| ||| ||||| |||| ||||||
Sbjct 2692 AAGACTCAATGCAATAAATTTTATAGTCTCTTGTTATTGGTCT 2734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 135400579157
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5