BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481471
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26150.1 | Symbols: ATHSFA2, HSFA2 | heat shock transcriptio... 1703 0.0
> AT2G26150.1 | Symbols: ATHSFA2, HSFA2 | heat shock transcription
factor A2 | chr2:11135682-11137396 FORWARD LENGTH=1391
Length=1391
Score = 1703 bits (922), Expect = 0.0
Identities = 1131/1230 (92%), Gaps = 22/1230 (2%)
Strand=Plus/Plus
Query 1 AAAATGGAGGAACTGAAAGTGGAAATGGAGGAAGAAACGGTGACGTTTACTGGTTCAGTG 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 172 AAAATGGAAGAACTGAAAGTGGAAATGGAGGAAGAAACGGTGACGTTTACTGGTTCTGTA 231
Query 61 GCTGCTTCTTCGTCTGTAGGATCGTCCTCGTCTCCGAGACCAATGG-AGGGTCTGAACGA 119
|| |||||||| ||||||||||| || || ||||| |||||||||| |||| || |||||
Sbjct 232 GCGGCTTCTTCATCTGTAGGATCCTCTTCCTCTCCTAGACCAATGGAAGGG-CTTAACGA 290
Query 120 GATAGGACCACCGCCGTTTCTGACTAAGACTTACGAAATGGTGGAGGATCCGGCGACTGA 179
| ||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 291 AACAGGGCCACCACCGTTTCTGACTAAGACTTACGAAATGGTGGAAGATCCGGCGACGGA 350
Query 180 CACTGTGGTTTCTTGGAGTAATGGTCGTAACAGCTTTGTGGTGTGGGATTCTCATAAGTT 239
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 CACGGTGGTTTCTTGGAGTAATGGTCGTAACAGCTTTGTGGTGTGGGATTCTCATAAGTT 410
Query 240 CTCAACAACTCTCCTTCCTCGTTACTTCAAGCATAGGAATTTCTCGAGTTTTATTCGTCA 299
|||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 411 CTCAACAACTCTCCTTCCACGTTACTTCAAGCATAGCAATTTCTCAAGTTTTATTCGTCA 470
Query 300 GCTTAATACTTATGGATTCAGAAAGATTGATCCAGATAGATGGGAATTTGCGCATGAAGG 359
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 471 GCTCAATACTTATGGATTCAGAAAGATTGATCCAGATAGATGGGAATTTGCAAATGAAGG 530
Query 360 GTTTTTAGCAGGACAGAAGCATCTCTTGAAGAACATTAAAAGAAGGAGGAACATGGGAAT 419
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 531 GTTTTTAGCAGGACAAAAGCATCTCTTGAAGAACATCAAAAGAAGGAGGAACATGGGTTT 590
Query 420 GCAGAATGTGAATCAGCAAGGATCTGGGATGTCATGTGTTGAAGTCGGGCAATACGGGTT 479
|||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||
Sbjct 591 GCAGAATGTGAATCAGCAAGGATCTGGGATGTCATGTGTTGAGGTTGGGCAATAC-GGTT 649
Query 480 T-GACGAGGAGGTGGAGAGGTTGAAGAGGGATCATAGTGTGCTTGTAGCTGAGGTAGTTA 538
| |||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 650 TCGACGGGGAGGTTGAGAGGTTGAAGAGGGATCATGGTGTGCTTGTAGCTGAGGTAGTTA 709
Query 539 GGCTGAGACAGCAGCAACATAGTTCCAAGAGTCAAGTTGCAGCGATGGAACAACGGTTGC 598
|| |||| || |||||||| || |||||||||||||||||||| ||||| ||||||||||
Sbjct 710 GGTTGAGGCAACAGCAACACAGCTCCAAGAGTCAAGTTGCAGCTATGGAGCAACGGTTGC 769
Query 599 TTGTTACTGAGAAGAGACAGCAGCAGATGATGACATTCCTCGCTAAGGCGTTGAACAATC 658
|||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 770 TTGTTACTGAGAAGAGACAGCAGCAGATGATGACGTTCCTTGCCAAGGCGTTGAACAATC 829
Query 659 CGAACTTTGTTCAGCAGTTTGC-TTTGATGAGTAAAGAGAAGAAGAGTTTGTTTGGTTTG 717
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 830 CGAACTTTGTTCAGCAGTTTGCGGTT-ATGAGTAAAGAGAAGAAGAGTTTGTTTGGTTTG 888
Query 718 GATGTGGGGAGGAAACGGAGGCTTACTTCTACTCCAAGCTTGGGGACTATGGAGGAGAAT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GATGTGGGGAGGAAACGGAGGCTTACTTCTACTCCAAGCTTGGGGACTATGGAGGAGAAT 948
Query 778 TTGTTGCATGATCAAGAGTTTGATAGAATGAAAGATGATATGGAGACGTTACTCGCTGCA 837
||||| |||||||||||||||||||||||||| ||||||||||| | ||| ||||||||
Sbjct 949 TTGTTACATGATCAAGAGTTTGATAGAATGAAGGATGATATGGAAATGTTGTTCGCTGCA 1008
Query 838 GCTATCGACAATGAGTCGAGTAATTTGATGCCTA-TGAAGGAGGAACAGTGTTTTGAGGC 896
|| ||||| ||||| ||| ||||| |||||||| | ||||||||||| ||||| |||||
Sbjct 1009 GCAATCGATGATGAGGCGAATAATTCGATGCCTACT-AAGGAGGAACAATGTTTGGAGGC 1067
Query 897 TATGAATGTGATGATGGGAGATGGTAATCTGGAAGCAGAGTTGGATGTGAAAGTGGAAGA 956
|||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1068 TATGAATGTGATGATGAGAGATGGTAATTTGGAAGCAGCGTTGGATGTGAAAGTGGAAGA 1127
Query 957 TTTGGTTGGTTCACCTTTGGATTGGGACAGTCAAGATCTACATGACATGGTTGATCAAAT 1016
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1128 TTTGGTTGGTTCGCCTTTGGATTGGGACAGCCAAGATCTACATGACATGGTTGATCAAAT 1187
Query 1017 GGTTTTTCTTGGTTCAGAGCCTTGACTTTACGGC-TGAACACATCTACTTGTCT-C--TC 1072
|| |||||||||||| || |||| ||| ||||| | ||||||||||||||| | | ||
Sbjct 1188 GGGTTTTCTTGGTTCGGAACCTTAACTATACGGTATTAACACATCTACTTGT-TGCGGTC 1246
Query 1073 TAAGTTGTGGTAACTACTACCACTTTTTATTTACTGgttgaattgtttgtttgtttgttt 1132
|||||| |||||| | ||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1247 TAAGTTATGGTAA-TGCTACCACTTTT-ATTTACTAGTTGAATTGTTTGTTTGTTTGTTT 1304
Query 1133 tgactcaatgaag-g-cattgagtgttgtttgttgtacatttgcttgtttCCT-GTTCTG 1189
|||||||| |||| | |||||||||| |||||||||||||||| | |||| || ||||||
Sbjct 1305 TGACTCAAGGAAGAGTCATTGAGTGTGGTTTGTTGTACATTTG-T-GTTTTCTTGTTCTG 1362
Query 1190 ATGAATAAAAATCAT-TGATTTGGTTTGAC 1218
||||||||||| | | |||||| |||||||
Sbjct 1363 ATGAATAAAAAAC-TCTGATTTCGTTTGAC 1391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839049640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5