BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481481

Length=559
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G26240.1 | Symbols:  | Transmembrane proteins 14C | chr2:111...   773    0.0  


> AT2G26240.1 | Symbols:  | Transmembrane proteins 14C | chr2:11167257-11168473 
REVERSE LENGTH=666
Length=666

 Score =  773 bits (418),  Expect = 0.0
 Identities = 469/494 (95%), Gaps = 2/494 (0%)
 Strand=Plus/Plus

Query  66   GAAGAAGAAAATGGAGTCATCTTTGTCGCAGAAGTTCACTCTTGTTTATGCTTCTCTCCT  125
            ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct  91   GAAGAAGAAAATGGACTCATCTTTGTCGCAGAAGTTCACTCTTGCTTATGCTTCTCTCCT  150

Query  126  CGGAGCTGGTGGGTTGATGGGTTACTTGAAACGCGGAAGCAAAATATCACTAGTCGCAGG  185
            ||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct  151  CGGAGTTGGTGGGTTGATGGGTTACCTGAAACGCGGAAGCAAAATATCACTTGTCGCAGG  210

Query  186  AGGAGGATCAGCGGCGTTGTTCTATTATGTATACACGGAGCTCCCAGGAAATCCAGTCTT  245
            |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  211  AGGAGGTTCAGCTGCGTTGTTCTATTATGTATACACGGAGCTCCCAGGAAATCCAGTCTT  270

Query  246  AGCATCCTCCATTGGCATTGTGGGGTCGGCGGCACTGACAGGGATGATGGGATCACGTTA  305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  271  AGCATCCTCCATTGGCATTGTGGGGTCGGCGGCACTGACAGGGATGATGGGATCACGTTA  330

Query  306  CCTAAGGACGAGGAAAGTGGTACCGGCTGGAGTTGTGTCGGTGGTGTCACTCGTGATGAC  365
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct  331  CCTAAGGACGAGGAAAGTGGTACCGGCTGGACTTGTGTCGGTGGTGTCACTCGTCATGAC  390

Query  366  TGGAGCTTACTTACATGGCCTCATTCGCTCAAGTTGAAGCGTCTCTGCCATCTTCCTTGG  425
            |||||||||||| || ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct  391  TGGAGCTTACTTGCACGGCCTCATTCGCTCAAGTTGAAGTGTCTCTGCTATCTTCCTTGG  450

Query  426  ACCTATTTCCCAATATTGCTTAAAGCtttttttGGTGGGCATTTCAAATTTCTGAAAATT  485
            |||||||| ||||||||| |||| | |||||| |||| ||||||||||||||||||||||
Sbjct  451  ACCTATTTTCCAATATTG-TTAAGG-TTTTTTGGGTGCGCATTTCAAATTTCTGAAAATT  508

Query  486  GTTGTACAAATGCTTTGTGGTGTTGTTTCTTTTACCAAGTTTTTATGTCCCGGTGTAATT  545
            |||||| |||||||||||||||||||||||||||||||||| ||||||||  ||||| ||
Sbjct  509  GTTGTATAAATGCTTTGTGGTGTTGTTTCTTTTACCAAGTTCTTATGTCCTTGTGTACTT  568

Query  546  TTAAGAGAATATAT  559
            |||||||| |||||
Sbjct  569  TTAAGAGATTATAT  582



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26825034498


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5