BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481483
Length=1787
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26260.1 | Symbols: AT3BETAHSD/D2, 3BETAHSD/D2 | 3beta-hydro... 2885 0.0
AT1G47290.2 | Symbols: AT3BETAHSD/D1, 3BETAHSD/D1 | 3beta-hydro... 1070 0.0
> AT2G26260.1 | Symbols: AT3BETAHSD/D2, 3BETAHSD/D2 | 3beta-hydroxysteroid-dehydrogenase/decarboxylase
isoform 2 | chr2:11178100-11182976
FORWARD LENGTH=1936
Length=1936
Score = 2885 bits (1562), Expect = 0.0
Identities = 1720/1796 (96%), Gaps = 11/1796 (1%)
Strand=Plus/Plus
Query 1 TTTCTCCTGAAAACATCTTTCAAG----CTC--TCTCTCAAAGGT-AATGCTTCTTTGAT 53
||||||||||||| || ||||||| ||| |||||||||||| ||||||||| ||||
Sbjct 46 TTTCTCCTGAAAAGATTTTTCAAGCTCTCTCTTTCTCTCAAAGGTAAATGCTTCTCTGAT 105
Query 54 TTCGCCATTTTTTC-TAGTCGATTCAAAAAGACATGACGCCGGAATCTACGGAGACGGAG 112
|||||||||||| | || ||||||| |||||||||| |||||| | ||||||||||||||
Sbjct 106 TTCGCCATTTTTGCTTACTCGATTC-AAAAGACATGTCGCCGGCAGCTACGGAGACGGAG 164
Query 113 CGATGGTGCGTTGTTACCGGTGGTAGAGGATTCGCGGCGAGGCATCTTGTTGAAATGCTC 172
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 165 CGATGGTGCGTTGTTACCGGCGGTAGAGGATTCGCGGCGAGGCATCTTGTTGAAATGCTC 224
Query 173 GTACGCTACGAAATGTTCAGCGTCCGCATCGCCGATTTAGCTCCGGCGATAATGCTTGAT 232
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 225 GTACGCTACGAAATGTTTTGCGTCCGTATCGCCGATTTAGCTCCGGCGATAATGCTTGAT 284
Query 233 CCTCATGAAGAGAACGGAGTTCTCGACGAAGGATTAAGATCTGGTCGTGTTCAATATATC 292
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 CCTCAGGAAGGGAACGGAGTTCTCGACGAAGGATTAAGATCTGGTCGTGTTCAATATATC 344
Query 293 TCCGCTGATCTTCGTGATAAATCTCAAGTCGTTAAAGCTTTTCAGGGAGCTGAGGTGGTG 352
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 345 TCCGCTGATCTTCGAGATAAATCTCAAGTCGTTAAAGCTTTTCAGGGAGCGGAGGTGGTG 404
Query 353 TTTCACATGGCAGCTCCAGATTCTTCTATCAACAATCATCAGCTTCAGTACTCGGTGAAT 412
||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 405 TTTCATATGGCAGCTCCAGATTCTTCTATTAACAATCATCAGCTTCAGTATTCGGTGAAT 464
Query 413 GTTCAAGGGACACAAAATGTGATTGATGCTTGTGTTGATGTTGGAGTAAAGAGGCTTATT 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 GTTCAAGGGACACAAAATGTGATTGATGCTTGTGTTGATGTTGGAGTAAAGAGGCTTATT 524
Query 473 TACACTAGCTCTCCTAGTGTTGTGTTTGATGGTGTTCATGGTATTTTAAATGGTAGTGAA 532
||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||
Sbjct 525 TACACTAGCTCTCCTAGTGTTGTGTTTGATGGTGTTCATGGTATTTTGAACGGTACTGAA 584
Query 533 TCAATGGCTTACCCAATTAAGCACAATGACTCATATTCAGCAACTAAAGCTGAAGGAGAA 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 TCAATGGCTTACCCAATTAAGCACAATGACTCATATTCAGCAACTAAAGCTGAAGGAGAA 644
Query 593 GAATTGATCATGAACGCGAATGGCAGAAATGGACTACTCACTTGTTGCATACGTCCAAGC 652
|| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 645 GAGTTGATCATGAAGGCTAATGGTAGAAATGGACTACTCACTTGTTGCATACGTCCAAGC 704
Query 653 AGTATTTTTGGTCCCGGTGATAGATTATTGGTTCCCTCACTTGTTGCTGCTGCTAGGGCT 712
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 705 AGTATTTTTGGTCCCGGTGATAGATTATTGGTTCCGTCGCTTGTTGCTGCTGCTAGGGCT 764
Query 713 GGAAAATCCAAGTTTATTATAGGTGATGGGAATAATCTCTATGATTTCACCTACGTTGAG 772
|| ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 765 GGGAAATCTAAGTTTATTATTGGTGATGGGAATAATCTCTATGATTTCACTTACGTTGAG 824
Query 773 AATGTTGCTCATGCCCATGTTTGTGCTGAGCGTGCTCTAGCTTCAGGAGGAGATGTTTCT 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 AATGTTGCTCATGCCCATGTTTGTGCTGAGCGTGCTCTAGCTTCAGGAGGAGATGTTTCT 884
Query 833 ACAAAAGCTGCAGGACAGGCATATTTCATTACCAACATGGAGCCAATTAAATTTTGGGAG 892
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 ACAAAAGCTGCAGGACAGGCATATTTCATTACCAACATGGAGCCAATTAAATTTTGGGAA 944
Query 893 TTTGTGTCACAGCTCCTTGAAGGACTTGGTTACGAGAGGCCAAGCATAAAGATCCCTGCG 952
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 945 TTTATGTCACAGCTCCTTGATGGACTTGGTTACGAGAGGCCAAGCATAAAGATCCCTGCG 1004
Query 953 TTTGTCATGATGCCGATTGCGCATCTGGTTGAACTGACATATAAACTGTTGGGACCATAT 1012
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1005 TTTATCATGATGCCGATTGCGCATCTGGTTGAACTGACATATAAAGTGTTGGGACCATAT 1064
Query 1013 GGGATGAAAGTACCACAACTAACACCTTCAAGAGTTAGGCTTCTCTCGTGCAGTAGAACT 1072
||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1065 GGGATGACAGTACCACAACTAACACCTTCAAGAGTTAGGCTTCTCTCATGCAGCAGAACT 1124
Query 1073 TTCGATTCCACAAAAGCAAAGGATCGGCTAGGCTATGCTCCTGTGGTGCCACTTCAGGAA 1132
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1125 TTCGATTCCACGAAAGCAAAGGATCGACTAGGCTATGCTCCTGTGGTCCCACTTCAGGAA 1184
Query 1133 GGTATACGGAGGACGATAGACTCATTCTCTCACCTAACAGCTGGAAGTCAATCCAAAAGA 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GGTATACGGAGGACGATAGACTCATTCTCTCACCTAACAGCTGGAAGTCAATCCAAAAGA 1244
Query 1193 GAGGGCCCATCTAAGGCTTCTAGGATCCTTGGAGGTGGAAAGGTTGCTGATACACTTCTC 1252
||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1245 GAGGGCCCATCCAAGGCTTCTAGGATTCTTGGAGGCGGAAAGGTTGCTGATACACTTCTC 1304
Query 1253 TGGAAGGATTTAAAGCAGACTCTCATTGCCATATTCATTCTAATTAGTATCTATTATAAC 1312
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1305 TGGAAGGATTTAAAGCAGACTCTTATTGCCATATTCATTCTAATTAGTATCTATTATAAC 1364
Query 1313 TTTGTTGCAACTGGGTCTACCATCGTAACTGCTCTTTCGAAGGCTCTATTGGTAGCATCG 1372
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1365 TTTGTTGCAACTGGGTCTACCGTCGTAACTGCTCTTTCGAAGGCTCTATTGGTAGCATCT 1424
Query 1373 GTATTTTTGTTCCTCCATGGCATTCTACCAGAGAAAATATTTGGTTATACAGTTGAAAAG 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 GTATTTTTGTTCCTCCATGGCATTCTACCAGAGAAAATATTTGGTTATACAGTTGAAAAG 1484
Query 1433 ATTCCTGCATCGCAGTTTCACCTCTCGAAAGACTCATCAGAACACCTCTCATTGTCAGTG 1492
|||||||||||||| ||||||||||| |||||||||||| | |||||||||||||||||
Sbjct 1485 ATTCCTGCATCGCAATTTCACCTCTCAAAAGACTCATCACATGACCTCTCATTGTCAGTG 1544
Query 1493 ATCTCTTCATGGAACACCACTGTAAAAGCTTTACGATCTCTTTGCCAGGGGAATGATTGG 1552
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1545 ATCTCTTCATGGAACACCACTGTAAAAGCTTTAAGATCTCTTTGCCAGGGGAATGATTGG 1604
Query 1553 AGCTTCTTTTTCAAGGTGGTCTTTGTTTTGTTAGCATTGAGTTTGGCTGGAGCCATATCT 1612
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1605 AGCTTCTTTTTCAAGGTGGTCTTCGTTTTGTTAGCATTGAGTTTGGCTGGAGCCATATCT 1664
Query 1613 CTTCACAGCATATTTGTTATAGGAATTCCCATTGCCTTCATTGCTTTTATCGTGTACGaa 1672
|||||||||||||||||||||||| | |||||||||||| |||||||| |||||||||||
Sbjct 1665 CTTCACAGCATATTTGTTATAGGACTGCCCATTGCCTTCCTTGCTTTTCTCGTGTACGAA 1724
Query 1673 aa-aaaGGAGCAAGAGATCGACTCAATAGTGGTGAGTTTTAAATCTTTCGCATGCAAGCG 1731
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1725 AAGAAAG-AGCAAGAGATCGACTCAATAGTGGTGAGTTTTAAATCTTTCGCATGCAAGCA 1783
Query 1732 GAAATCTGATGTGTATGAGAAACTGTTCGGAAGCAAGAAACATGACTAAGAACCCT 1787
||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1784 CAAATCCGATGTGTATGAGAAATTGTTCGGAAGCAAGAAACATGACTAAAAACCCT 1839
> AT1G47290.2 | Symbols: AT3BETAHSD/D1, 3BETAHSD/D1 | 3beta-hydroxysteroid-dehydrogenase/decarboxylase
isoform 1 | chr1:17335849-17339273
FORWARD LENGTH=1706
Length=1706
Score = 1070 bits (579), Expect = 0.0
Identities = 934/1106 (84%), Gaps = 22/1106 (2%)
Strand=Plus/Plus
Query 100 TACGGAGACGGAGCGATGGTGCGTTGTTACCGGTGGTAGAGGATTCGCGGCGAGGCATCT 159
||| ||||| ||||||||||||||||| || ||||||||||||||||| || || |||||
Sbjct 158 TACAGAGACTGAGCGATGGTGCGTTGTAACTGGTGGTAGAGGATTCGCTGCAAGACATCT 217
Query 160 TGTTGAAATGCTCGTACGCTACGAAATGTT-CAGCGTCCGCATCGCCGATTTAGCTCCGG 218
||| |||||||||||||| ||| ||||||| || ||| || ||||||||||||||||| |
Sbjct 218 TGTAGAAATGCTCGTACGTTACCAAATGTTCCA-CGTTCGTATCGCCGATTTAGCTCCTG 276
Query 219 CGATAATGCTTGATCCTCATGAAGAGAAC-GGAGTTCTCGACGAAG-GATTAAGATCTGG 276
||||| |||| ||||||| || || ||| ||| |||||| |||| ||| ||||| ||
Sbjct 277 CGATAGTGCTCAATCCTCACGAGGA-AACTGGAATTCTCGGTGAAGCAATT-AGATCCGG 334
Query 277 TCGTGTTCAATATATCTCCGCTGATCTTCGTG-ATAAATCTCAAGTCGTTAAAGCTTTTC 335
| | |||||||| |||||||||||||||| | | ||| ||||||| || |||| |||||
Sbjct 335 TAGAGTTCAATACGTCTCCGCTGATCTTCG-GAACAAAACTCAAGTTGTCAAAGGTTTTC 393
Query 336 AGGGAGCTGAGGTGGTGTTTCACATGGCAGCTCCAGATTCTTCTATCAACAATCATCAGC 395
| ||||| || ||||||||||| ||||||||||||||||| || || |||||||| ||||
Sbjct 394 AAGGAGCAGAAGTGGTGTTTCATATGGCAGCTCCAGATTCATCGATTAACAATCACCAGC 453
Query 396 TTCAGTACTCGGTGAATGTTCAAGGGAC-ACAAAATGTGATTGATGCTTGTGTTGATGTT 454
|||||||||| || |||||||||||||| || |||||| |||||||||||| |||| |||
Sbjct 454 TTCAGTACTCAGTTAATGTTCAAGGGACAAC-AAATGTAATTGATGCTTGTATTGAGGTT 512
Query 455 GGAGTAAAGAGGCTTATTTACACTAGCTCTCCTAGTGTTGTGTTTGATGGTGTTCATGGT 514
|||||||||||||| || || || || ||||| |||||||||||||| || || ||||||
Sbjct 513 GGAGTAAAGAGGCTAATCTATACAAGTTCTCCGAGTGTTGTGTTTGACGGGGTCCATGGT 572
Query 515 ATTTTAAATGGTAG-TGAATCAATGGCTTACCCAATTAAGCACAATGACTCATATTCAGC 573
| ||| |||| | | ||||||| || | || ||| |||||| ||||| |||||||||||
Sbjct 573 ACTTTGAATGCT-GATGAATCACTGCCGTATCCACCTAAGCATAATGATTCATATTCAGC 631
Query 574 AACTAAAGCTGAAGGAGAAGAATTGATCATGAACGCGAATGGCAGAAATGGACTACTCAC 633
|||||||||||||| |||| ||||| |||| |||||||| |||| ||||||||||||
Sbjct 632 TACTAAAGCTGAAGGGGAAGCTTTGATTTTGAAAGCGAATGGAAGAAGTGGACTACTCAC 691
Query 634 TTGTTGCATACGTCCAAGCAGTATTTTTGGTCCCGGTGATAGATTATTGGTTCCCTCACT 693
||||||||||||||| ||||| || |||||||| ||||||| |||| ||||||| || ||
Sbjct 692 TTGTTGCATACGTCCTAGCAGCATATTTGGTCCTGGTGATAAATTAATGGTTCCATCGCT 751
Query 694 TGTTGCTGCTGCTAGGGCTGGAAAATCCAAGTTTATTATAGGTGATGGGAATAATC-TCT 752
|||| ||||||| |||||||| ||||||||||| |||||||||||||||| ||| | |||
Sbjct 752 TGTTACTGCTGCCAGGGCTGGGAAATCCAAGTTCATTATAGGTGATGGGAGTAA-CTTCT 810
Query 753 ATGATTTCACCTACGTTGAGAATGTTGCT-CATGCCCATGTTTGTGCTGAGCGTGCTCTA 811
|||||||||| || ||||| ||||||| | || |||||||| ||||||||||| ||||||
Sbjct 811 ATGATTTCACTTATGTTGAAAATGTTG-TGCACGCCCATGTCTGTGCTGAGCGAGCTCTA 869
Query 812 GCTTCAGGAGGAGATGTTTCTACAAAAGCTGCAGGACAGGCATATTTCATTACCAACATG 871
|| ||||||||||| || | | |||||||||| || ||||| || |||||||||||||||
Sbjct 870 GCATCAGGAGGAGAAGTATGTGCAAAAGCTGCTGGCCAGGCTTACTTCATTACCAACATG 929
Query 872 GAGCCAATTAAATTTTGGGAGTTTGTGTCACAGCTCCTTGAAGGACTTGGTTACGAGAGG 931
|||||||||||||||||||||||| |||||||||| |||||||||||||| || ||||||
Sbjct 930 GAGCCAATTAAATTTTGGGAGTTTATGTCACAGCTTCTTGAAGGACTTGGCTATGAGAGG 989
Query 932 CCAAGCATAAAGATCCCTGCGTTTGTCATGATGCCGATTGCGCATCTGGTTGAACT-GAC 990
||||| |||||||| ||||| | |||||||||| || || |||| || ||||| | |
Sbjct 990 CCAAGTATAAAGATACCTGCAAGTCTCATGATGCCAATAGCATATCTTGTGGAACTAG-C 1048
Query 991 ATATAAACTGTTGGGACCATATGGGATGAAAGTACCACAACTAACACCTTCAAGAGTTAG 1050
||||||| | | ||||| |||||||||||||||||| ||||||||||| || |||||
Sbjct 1049 ATATAAATTACTCGGACCGTATGGGATGAAAGTACCAGTGCTAACACCTTCTAGGGTTAG 1108
Query 1051 GCTTCTCTCGTGCAGTAGAAC-TTTCGATTCCACAAAAGCAAAGGATCGGCTAGGCTATG 1109
||| ||||| |||| ||||| ||| ||||| |||||||||||||||| ||||||||
Sbjct 1109 GCTACTCTCTTGCAACAGAACATTT-GATTCTTCAAAAGCAAAGGATCGTTTAGGCTATT 1167
Query 1110 CTCCTGTGGTGCCACTTCAGGAAGGTATACGGAGGACGATAGACTCATTCTCTCACCT-A 1168
||||||| || |||||||||||||||||| |||||| ||||| |||||||| ||| | |
Sbjct 1168 CTCCTGTTGTCCCACTTCAGGAAGGTATAAAGAGGACAATAGATTCATTCTCACACTTGA 1227
Query 1169 ACAGCTGGAAGTCAATCCAAAAGAGA 1194
| |||| || |||| |||||| |||
Sbjct 1228 A-AGCTCAAAATCAACCCAAAACAGA 1252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88403159745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5