BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481489
Length=1910
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26300.1 | Symbols: GPA1, GP ALPHA 1, ATGPA1 | G protein alp... 2479 0.0
> AT2G26300.1 | Symbols: GPA1, GP ALPHA 1, ATGPA1 | G protein alpha
subunit 1 | chr2:11196996-11201102 FORWARD LENGTH=2034
Length=2034
Score = 2479 bits (1342), Expect = 0.0
Identities = 1774/1966 (90%), Gaps = 96/1966 (5%)
Strand=Plus/Plus
Query 1 AATGCATATAGATTCCGTAATTAATCTTC-TTATCTTCACGAGAGGCACATC--TTTTCA 57
||||||||||| ||||||||||||||||| ||||| |||||||||||||||| ||||||
Sbjct 27 AATGCATATAGGTTCCGTAATTAATCTTCTTTATCGTCACGAGAGGCACATCTTTTTTCA 86
Query 58 ACATTTGACCA----------------CT-AGGACCTTTCGGCGTAATTTCGTCTTCCCC 100
||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 87 ACATTTGACCACTCTCTCTCTCTCTCTCTCAGGACCTTTCGGCGTAATTTCGTCTTCCCC 146
Query 101 TTTGCTTAACATTTCTTCTTTCTTTCTTTACGACC-AA-A-T-AAAATAT-T--A-TTTT 152
||||||||||| || |||||||||||||| |||| || | | ||||||| | | ||||
Sbjct 147 TTTGCTTAACA-TT-TTCTTTCTTTCTTTTTGACCAAATATTAAAAATATATCCATTTTT 204
Query 153 A----A--TTAAATT-AATT-ATGTATCT-C-TCTGA--Ta-aaaaaaTACAAAATACAT 199
| | || |||| |||| || || | | | | | || | |||| |||| |
Sbjct 205 ATTTTATTTTTAATTAAATTCAT-AATTTGCATTTTATGTATTTATAATA-AAAA-GGAG 261
Query 200 AG-ATAAATCCAAAAGAGTGAAGC-AAAACATTGAAGCGGAAAGAAAGTGGT-AAACAAT 256
|| ||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||
Sbjct 262 AGAATAAATCCAAAAGAGTGAAGCAAAAACATTAAAGCGGAAAGAAAGTGGTAAAACAAT 321
Query 257 AATAGAAACAGGAGAAGCAG-A--ACTAGTActtcttcttctgctctcttctcagacctt 313
|||||||||||||||||||| | |||| | |||||||||||||||||||||||||||||
Sbjct 322 AATAGAAACAGGAGAAGCAGAAGTACTACTTCTTCTTCTTCTGCTCTCTTCTCAGACCTT 381
Query 314 gttttgtac--t-ttcttcttcttcttcttc----tt-----ct----tatcttcttcAC 357
||||||||| | |||||||||||||||||| || || ||||||||||||
Sbjct 382 GTTTTGTACTTTCTTCTTCTTCTTCTTCTTCTTGTTTGCGAACTCCGATATCTTCTTCAC 441
Query 358 TACCTTTGACTCCATTTCTTTTTGC-TCTTCAGGTGAATTCTACTTTTACCTTTTTTACC 416
||||||||||||||||||||||| | |||||||||| | | | || | | || |||
Sbjct 442 TACCTTTGACTCCATTTCTTTTT-CTTCTTCAGGTGTAGGC-A-TTGT--C-TTGTTATG 495
Query 417 CCAACCAAAT-TTGCT--CTTCT-GGGT-TTTATTTATAG-TGGTGAAGCTTGAATCTTG 470
|| ||| | | ||| || || ||| ||| ||| | ||| |||||||||||||
Sbjct 496 AGAAGCAACTGTAGCTGGAAGCTCAAGTATTTGTTTTTAGCT-GTGGAGCTTGAATCTTG 554
Query 471 ATAGTTTTCGACTTCCATGCTATTACCTGTGGGGATATAGAAACAATCATGGGCTTACTC 530
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 555 ATAGTTTTCGACTTCTATGTTATTACCTGTGGGGATATAGAAACAATCATGGGCTTACTC 614
Query 531 TGCAGTAGAAGTCGACATCATACTGAAGATACTGATGAGAATACACAGGCAGCTGAAATC 590
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 615 TGCAGTAGAAGTCGACATCATACTGAAGATACTGATGAGAATACACAGGCTGCTGAAATC 674
Query 591 GAAAGACGGATAGAGCAAGAAGCAAAGGCCGAAAAGCATATTCGGAAGCTACTACTACTT 650
||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||
Sbjct 675 GAAAGACGGATAGAGCAAGAAGCAAAGGCTGAAAAGCATATTCGGAAGCTTTTGCTACTT 734
Query 651 GGTGCTGGAGAATCTGGAAAATCTACAATTTTTAAGCAGATAAAACTTCTCTTTCAAACG 710
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 735 GGTGCTGGGGAATCTGGAAAATCTACAATTTTTAAGCAGATAAAACTTCTATTCCAAACG 794
Query 711 GGATTTGATGAAGGAGAACTAAAGAGCTATGTTCCAGTCATCCATGCCAATGTCTATCAC 770
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 795 GGATTTGATGAAGGAGAACTAAAGAGCTATGTTCCAGTCATTCATGCCAATGTCTATCAG 854
Query 771 ACTATAAAATTATTGCATGATGGAACAAAGGAGTTTGCTCAAAATGAAGCAGATTCTGCA 830
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 855 ACTATAAAATTATTGCATGATGGAACAAAGGAGTTTGCTCAAAATGAAACAGATTCTGCT 914
Query 831 AAATATATGTTATCCTCTGAAAGTATTGCAATTGGGGAGAAACTATCTGAGATTGGTGGT 890
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 AAATATATGTTATCTTCTGAAAGTATTGCAATTGGGGAGAAACTATCTGAGATTGGTGGT 974
Query 891 AGGTTAGACTATCCGCGTCTTACCAAGGACCTCGCTGAGGGAATCGAAACACTATGGAAG 950
|||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 975 AGGTTAGACTATCCACGTCTTACCAAGGACATCGCTGAGGGAATAGAAACACTATGGAAG 1034
Query 951 GATCCTGCAATTCAGGAAACATGTGCTCGTGGTAATGAGCTTCAGGTTCCTGATTGTACA 1010
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1035 GATCCTGCAATTCAGGAAACTTGTGCTCGTGGTAATGAGCTTCAGGTTCCTGATTGTACG 1094
Query 1011 AAATATCTGATGGAGAACTTGAAGAGACTATCAGATATAAATTATATTCCAACAAAGGAA 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1095 AAATATCTGATGGAGAACTTGAAGAGACTATCAGATATAAATTATATTCCAACTAAGGAG 1154
Query 1071 GATGTTCTCTATGCAAGAGTTCGCACAACTGGTGTCGTGGAAATACAGTTCAGCCCCGTG 1130
||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1155 GATGTACTTTATGCAAGAGTTCGCACAACTGGTGTCGTGGAAATACAGTTCAGCCCTGTG 1214
Query 1131 GGAGAGAATAAGAAAAGTGGTGAAGTGTACCGATTATTTGACGTGGGTGGACAGAGAAAT 1190
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1215 GGAGAGAATAAAAAAAGTGGTGAAGTGTACCGATTGTTTGACGTGGGTGGACAGAGAAAT 1274
Query 1191 GAGAGGAGGAAATGGATTCATCTGTTCGAAGGTGTAACTGCTGTGATATTTTGTGCTGCC 1250
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1275 GAGAGGAGGAAATGGATTCATCTGTTTGAAGGTGTAACAGCTGTGATATTTTGTGCTGCC 1334
Query 1251 ATTAGCGAGTACGACCAAACGCTCTTTGAGGACGAGCAGAAAAACAGGATGATGGAGACC 1310
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 ATCAGCGAGTACGACCAAACGCTCTTTGAGGACGAGCAGAAAAACAGGATGATGGAGACC 1394
Query 1311 AAAGAATTATTCGATTGGGTCCTGAAACAGCCCTGTTTCGAGAAAACATCCTTCATGCTG 1370
|| ||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1395 AAGGAATTATTCGACTGGGTCCTGAAACAACCCTGTTTTGAGAAAACATCCTTCATGCTG 1454
Query 1371 TTCTTGAACAAGTTCGACATATTTGAGAAGAAGGTTCTTGATGTTCCGTTAAACGTTTGC 1430
|||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct 1455 TTCTTGAACAAGTTCGACATATTTGAGAAGAAAGTTCTTGACGTTCCGTTGAACGTTTGC 1514
Query 1431 GAGTGGTTCAGAGATTACCAACCAGTTTCAAGTGGGAAACAAGAGATTGAGCATGCATAC 1490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1515 GAGTGGTTCAGAGATTACCAACCAGTTTCAAGTGGGAAACAAGAGATTGAGCATGCATAC 1574
Query 1491 GAGTTTGTGAAGAAGAAGTTTGAGGAATTATATTACCAAAACACGGCTCCGGATAGAGTG 1550
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 1575 GAGTTTGTGAAGAAGAAGTTTGAGGAGTTATATTACCAGAACACGGCGCCGGATAGAGTG 1634
Query 1551 GACAGGGTATTCAAAATCTACAGGACGACGGCTTTGGACCAGAAGCTTGTAAAGAAAACA 1610
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1635 GACAGGGTATTCAAAATCTACAGGACGACGGCTTTGGACCAGAAGCTTGTAAAGAAAACG 1694
Query 1611 TTCAAACTCGTAGATGAGACACTAAGAAGGAGAAATCTATTGGAGGCTGGCCTTTTATGA 1670
||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1695 TTCAAGCTCGTAGATGAGACACTAAGAAGGAGAAATTTACTGGAGGCTGGCCTTTTATGA 1754
Query 1671 CCTTATTATTACATATCTCAAGTAAATTACCTCTC---ATTAT-A-A-GAAAAATTCGAT 1724
||||||||||||||||||| ||||||||||||||| ||||| | | |||||| ||||
Sbjct 1755 CCTTATTATTACATATCTCTAGTAAATTACCTCTCCTTATTATTATAAGAAAAACTCGAA 1814
Query 1725 AACTAAATGACCGTGTAATTGATCTGTCGGGACAAA-GACTTGGCGATTCAAAATCTAAT 1783
|||| ||||||||||||||| |||| |||||||||| ||||| |||||||||||||||||
Sbjct 1815 AACTGAATGACCGTGTAATTTATCTTTCGGGACAAAAGACTTAGCGATTCAAAATCTAAT 1874
Query 1784 GCGTCTCGAATGGGCTCCGACTAGTTTCTATTTTCTCATTGTTTT-GTTTAACATTCCTC 1842
| ||||||| ||| || ||||||||||||||||| |||||||||| ||| ||||||||||
Sbjct 1875 GTGTCTCGA-TGG-CTACGACTAGTTTCTATTTTATCATTGTTTTTGTT-AACATTCCTC 1931
Query 1843 TGTCTTTGGCTTCATATTGTTTTT-C--ATCAAAAGCATCTCATTT 1885
|||||||| |||| |||| ||||| | ||||||| ||||||||||
Sbjct 1932 TGTCTTTGACTTCTTATTTTTTTTTCTCATCAAAAACATCTCATTT 1977
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94577826780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5