BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481490
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26310.1 | Symbols: | Chalcone-flavanone isomerase family p... 1842 0.0
> AT2G26310.1 | Symbols: | Chalcone-flavanone isomerase family
protein | chr2:11201303-11204153 FORWARD LENGTH=1652
Length=1652
Score = 1842 bits (997), Expect = 0.0
Identities = 1215/1315 (92%), Gaps = 36/1315 (3%)
Strand=Plus/Plus
Query 1 TGTCAAATATGGATCCCAATTCAGTTTTACCAAAGAGGAGTTTCTTAC-ACAATGAGTTG 59
|||||||||||||||| |||||||||||||| ||||| |||||||||| || ||||||||
Sbjct 223 TGTCAAATATGGATCCTAATTCAGTTTTACCTAAGAGAAGTTTCTTACAAC-ATGAGTTG 281
Query 60 TTTTCGCAATTACATATACCCGGAAGCTTCGCTTTCGAAGCATTTAGTTGTATCTCCAAG 119
||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 282 TTTTCACAATTACATATACCTGGAAGCTTAGCTTTCGAAGCATTTAGTTGTATCTCTAAG 341
Query 120 TTTACAGGAGCTTTGCTTTGTTGGTTTTCACATGGGAACTTGCAAAAGGAAGTATCTAAA 179
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 342 TTTACAGGAGCTTTGCTTTGTTGGTTTTCACATGGAAACTTGCAAAAAGAAGTATCTAAA 401
Query 180 CATCAATGGGGATTAACTTGTAAGAGCTC-TGATTCTTCGAAGA-ATTTGTTTGAGCATC 237
||||||||||||||||||||||||||| | |||||||| || | || ||||||| |||
Sbjct 402 CATCAATGGGGATTAACTTGTAAGAGC-CGTGATTCTT-TAAAACATGTGTTTGAACATA 459
Query 238 GGAACTTCTCTGTGTTCCCATTTCACTATGTATCAAAAGATATTACTCCTGGCTTCTTTG 297
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 460 GGAACGTCTCTGTGTTCCCATTTCACTATGTATCAAAAGATATTAGTCCTGGCTTCTTTG 519
Query 298 GAAGTATTTCTAAATCCACTATTCAGCATTTTGTTAATGAAGCTGAGAGGCTACATTCGT 357
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 GAAACATATCTAAATCCACTATTCAGCATTTTGTTAATGAAGCTGAGAGGCTACATTCGT 579
Query 358 GTTCTGTGCTCTCCTTGGCTGCGGCGTTGATACCGTCTTTGAATGTTATGTCTGCTTATG 417
||||| ||||||| ||||| || ||| ||||||||||||||||||| |||||||| |||
Sbjct 580 GTTCTTTGCTCTCTTTGGCGGCTGCGATGATACCGTCTTTGAATGTCATGTCTGCAAATG 639
Query 418 GACATGCTCTGCCTCTAGGGAGT-A--ATG----A--T-----G----TT---C--A--A 452
||| ||||||||| ||||||||| | ||| | | | || | | |
Sbjct 640 GACTTGCTCTGCCACTAGGGAGTAATGATGTTAAACTTAGGGAGAACATTGAACATAGGA 699
Query 453 CTT-T-CGGAGAATACCGGAA-ATAGGACTTGTCAGGTTGGACATGAGGAATATAGTGGT 509
||| | ||||||| | | ||| |||||||||||||||| ||| ||| ||||||||||||
Sbjct 700 CTTGTCCGGAGAACA-CTGAACATAGGACTTGTCAGGTGGGATGTGAAGAATATAGTGGT 758
Query 510 TTGAGTTTTCACAAATTAGACTGGACAAGACAAACAGTGGAGCCTCGAACAGGGATCGAG 569
||||||||||| ||||||||||||||||||||| ||||||||||| | || |||||||||
Sbjct 759 TTGAGTTTTCAAAAATTAGACTGGACAAGACAATCAGTGGAGCCTAGGACGGGGATCGAG 818
Query 570 TTCCCGATGTTGTTGAAGGAGAATGCTTCGCGATCGAATTCTGAGGTGCTTGTTGCAACT 629
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 TTCCCGATGTTGTTGAAGGAGAATGCTTCGCGATCGAATTCTGAGGTGCTTGTTGCAACG 878
Query 630 GGATCTCGGACAATGAAAATTATCAGAATTAAATCTCTAAAAGTATATGCATTTGGTTTT 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 GGATCTCGGACAATGAAAATTATCAGAATTAAATCTCTAAAAGTATATGCATTTGGTTTT 938
Query 690 TATGTTCATCCTTCCTCGGTCTGCCAGAAGCTTGGCCGAAAGTATGCCTCGGTTCCAGCG 749
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 939 TATGTTCACCCTTCCTCGGTCTGTCAGAAGCTTGGCCGAAAGTATGCCTCGGTTCCAGCA 998
Query 750 AGCAAACTTGAAAAATGCGATGACTTATACAAAGACCTTCTTAGGGAGGATATTGTTATG 809
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 AGCAAACTTGACAAATGCGATGACTTATACAAAGACCTTCTTAGGGAGGATATTGTTATG 1058
Query 810 AGTGTGAGGCTTGTGGTTAACTACAATGGCTTGAAGATCAATACTGTGAGAGATGTTTTT 869
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 AGTGTGAGGCTTGTGGTTAACTACAATGGCTTGAAGATCAATACTGTGAGAGATGTTTTC 1118
Query 870 GAGAAATCTCTGCGTGCTCGTTTGGTGAAGGCAAATCCAAAAACTGATTTCAATTGTTTG 929
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1119 GAGAAATCTCTGCGTGCTCGCTTGGTTAAGGCAAATCCAAAAACTGATTTCAATTGTTTG 1178
Query 930 AATGATTTTGGTTCATTCTTCAGACAAGACATTCCAATACCCGCTGGAACAATAATAGAC 989
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1179 AATGATTTTGGTTCATTCTTTAGACAAGACATTCCAATACCCGCGGGAACAATAATAGAC 1238
Query 990 TTTCGACGAACAGAAGATGGACAACTAATCACAGAGATTGGCGGTAACCTGATTGGCGCT 1049
||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 1239 TTTCGGCGAACAGAAGATGGACAGCTAATCACAGAGATTGGTGGTAACCTGATTGGAGCT 1298
Query 1050 GTCCGAAGCAAGGATCTTTGCAGAGCATTTTTTGGTATGTACATTGGAGATGTTCCGGTG 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 GTCCGAAGCAAGGATCTTTGCAGAGCATTTTTTGGTATGTACATTGGAGATGTTCCGGTG 1358
Query 1110 TCAGAGCAGACAAAGGAGGAGATTGGTAGGAAAGTGGTGGGAATCATAAAGAGATGCTGA 1169
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1359 TCAGAGCAGACAAAGGAGGAGATTGGTAGAAAAGTGGTGGGAATCATAAAGAGATGCTGA 1418
Query 1170 AATCAATTACTTGTTAGACGTCCAATGGCCTCTGAGTTTTAGAAGAAGGCAATTGGGTTA 1229
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1419 AATCAATTACTTGTTAGATTTCCAATTGCCTCTGAGTTTTAGAAGAAGGCAATTGGGTTA 1478
Query 1230 GATTTACGCAGTCATGTCTAGCTGTTGTTAAATCAAATTACTTTGAAAGCAGCTT 1284
||||||||| ||||||||||| | |||| || ||||| ||||||| |||||||||
Sbjct 1479 GATTTACGCGGTCATGTCTAGATATTGTCAA-TCAAAATACTTTGTAAGCAGCTT 1532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63152285610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5