BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481492
Length=1555
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26350.1 | Symbols: PEX10, ATPEX10 | peroxin 10 | chr2:11217... 2222 0.0
> AT2G26350.1 | Symbols: PEX10, ATPEX10 | peroxin 10 | chr2:11217439-11220507
REVERSE LENGTH=1566
Length=1566
Score = 2222 bits (1203), Expect = 0.0
Identities = 1469/1588 (93%), Gaps = 55/1588 (3%)
Strand=Plus/Plus
Query 1 ATTTATTTTTCCTTTAAATT--GGAAAAATATCAAAAGCCGAATAAAAAACATCATTC-G 57
||||||||||||||| |||| |||||||||||| ||||||||||||||||||||| |
Sbjct 1 ATTTATTTTTCCTTTGAATTAAAAAAAAATATCAAAGGCCGAATAAAAAACATCATTCGG 60
Query 58 CAAGTTCATCGATCCACGaaaaaaaaG---CGATGAGGCTTAGTGGGGATTCGGGTCCGG 114
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 61 CAAGTTCATCGATCCACGAAAAAAAAGAAACGATGAGGCTTAATGGGGATTCGGGTCCGG 120
Query 115 GTCAGGATGAACCCGGTTCGAGCGGGTTTCACGGCGGAATCAGACGATTCCCGTTAGCAG 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTCAGGATGAACCCGGTTCGAGCGGGTTTCACGGCGGAATCAGACGATTCCCGTTAGCAG 180
Query 175 CTCAGCCGGAGATTATGAGAGCTGCCGAGAAAGACGATCAATACGCTTCTTTCATCCACG 234
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 CTCAGCCGGAGATTATGAGAGCTGCTGAGAAAGACGATCAATACGCTTCTTTCATCCACG 240
Query 235 AAGCTTGCCGCGATGCCTTCCGACACCTTTTCGGTACAAGAATCGCTCTAGCTTACCAGA 294
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 241 AAGCTTGCCGCGATGCCTTCCGACACCTTTTCGGTACAAGAATCGCTCTTGCTTACCAGA 300
Query 295 AGGAGATGAAGCTACTTGGACAGATGCTTTACTATGTTCTTACGACAGGTTCAGGACAAC 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 AGGAGATGAAGCTACTTGGACAGATGCTTTACTATGTTCTTACGACAGGTTCAGGGCAAC 360
Query 355 AAACTTTAGGAGAGGAATATTGTGACATTATACAGGTTGCAGGACCTTATGGACTCTCTC 414
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 361 AAACTTTAGGAGAGGAATATTGTGACATTATACAGGTTGCAGGGCCTTATGGACTCTCTC 420
Query 415 CTACACCAGCTAGACGTGCTTTGTTCATATTGTACCAGACCGCAGTTCCATATATCGCAG 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTACACCAGCTAGACGTGCTTTGTTCATATTGTACCAGACCGCAGTTCCATATATCGCAG 480
Query 475 AGAGAATTAGCACTCGAGCTGCCACGCAAGCAGTCACCTTTGATGAGTCTGATGAGTTTT 534
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 481 AGAGAATTAGCACTCGAGCTGCTACGCAAGCAGTCACCTTTGATGAGTCTGATGAG--TT 538
Query 535 TTGGTCATAGTGCACTGGAGAGTGGTAGTCATATCCACTCACCAAGAATGATAGATCTTC 594
|| | | | | | || |||||||||||||||||||||||||||||||||||
Sbjct 539 TT--T--T-G-G---T---GA----TAGTCATATCCACTCACCAAGAATGATAGATCTTC 582
Query 595 CATCTTCATCTCAAATTGAGACTTCAGCGTCTGTAGTACCTAGGTTAAAAGATAGACTTA 654
|||||||||||||| |||| |||||| | ||||||||| |||||||||| ||||||||||
Sbjct 583 CATCTTCATCTCAAGTTGAAACTTCAACTTCTGTAGTATCTAGGTTAAACGATAGACTTA 642
Query 655 AGAGATTGTGGCACCAAGCTATTCAGAGAAGGCCTGTGGTTCTTCCTGTTGCGCGTGAAG 714
||||| |||||||| |||||||||| || |||||||||||||||||||||| || ||||
Sbjct 643 TGAGATCGTGGCACCGAGCTATTCAGCGATGGCCTGTGGTTCTTCCTGTTGCCCGCGAAG 702
Query 715 TCTTACAACTGGTTCTGCGTGCCAATTTGATGCTCTTCTACTTTGAAGGTTTGTATTATC 774
|||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 703 TCTTACAACTGGTTTTGCGTGCCAATCTGATGCTCTTCTACTTTGAAGGTTTTTATTATC 762
Query 775 ATATATCGAAACGTGCATCCGGGGTTCGTTATGTTTTCATAGGAAAGCAACTGAATCAGA 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 ATATATCGAAACGTGCATCCGGGGTTCGTTATGTTTTCATAGGAAAGCAACTGAATCAGA 822
Query 835 GACCTAGATACCAAATTCTTGGGGTTTTCCTTCTAGTCCAATTGTGCATCCTTGCTGCTG 894
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 823 GACCTAGATACCAAATTCTTGGGGTTTTCCTTCTAATCCAATTGTGCATCCTTGCTGCTG 882
Query 895 AGGGCTTGCGTCGGAGTAATTTGTCATCTATCACAAGTTCAATTCAGCAGGCGTCTATAG 954
|||||||||||||||||||||||||||||||||| || || ||||||||||| |||||||
Sbjct 883 AGGGCTTGCGTCGGAGTAATTTGTCATCTATCACTAGCTCCATTCAGCAGGCTTCTATAG 942
Query 955 GATCTTATCAAACTTCAGGAGGGAGAGGATTACCTGTTTTAAACGAAGAGGGAAATTTGA 1014
|||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||
Sbjct 943 GATCTTATCAAACTTCAGGAGGGAGAGGTTTACCTGTTTTAAATGAAGAGGGGAATTTGA 1002
Query 1015 TAACTTCAGAAGCTGAGAAGGGAAACTGGTCCACGTCCGATTCATCTTCAACTTTGGAGG 1074
||||||| |||||||| |||||||||||||| || ||||||||| ||||||| |||||
Sbjct 1003 TAACTTCGGAAGCTGAAAAGGGAAACTGGTCTACCTCCGATTCAACTTCAAC---GGAGG 1059
Query 1075 CTGTAGGGAAATGCACTCTCTGCTTAAGCACTCGTCAGCACCCAACGGCCACTCCTTGTG 1134
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1060 CAGTAGGGAAATGCACTCTCTGCTTAAGCACCCGTCAGCACCCAACGGCCACTCCTTGTG 1119
Query 1135 GTCATGTGTTTTGTTGGAACTGCATTATGGAATGGTGCAACGAGAAGCAAGAATGTCCTC 1194
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1120 GTCATGTGTTTTGTTGGAGCTGCATTATGGAATGGTGCAACGAGAAGCAAGAATGCCCTC 1179
Query 1195 TTTGTCGAACACCCAATACCCATTCAAGTTTGGTTTGTTTGTATCATTCTGATTTTTAAG 1254
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1180 TTTGTCGAACGCCCAATACCCATTCAAGTTTGGTTTGTTTGTATCATTCTGATTTTTAGG 1239
Query 1255 CAC--T---AT-------G---GGCACTGCAGAAAGGCGAAGCAGCTAAGACGGTGACAC 1299
||| | || | |||||||||||||||| ||||||||||||| |||||||
Sbjct 1240 CACAATGGGATCAACAAAGACAGGCACTGCAGAAAGGCAAAGCAGCTAAGACAGTGACAC 1299
Query 1300 CTTCGGACAGTGCATCTGGTACAAGAATGGAATCTGTTTTGGCTTCAGACTTTTTGAGTA 1359
|| |||||||||||||| |||| |||||||||||| || ||||||||||||||||||||
Sbjct 1300 CTAAGGACAGTGCATCTGCTACAGGAATGGAATCTGCTTCGGCTTCAGACTTTTTGAGTA 1359
Query 1360 AGATCATCAAGTTATGAGAAGAC-ACAGAATAA-TGTATTTCAGACTTCATTCTCGATCC 1417
|||||| |||||||||||| || ||||||||| | |||||| ||| |||||||||||||
Sbjct 1360 AGATCAACAAGTTATGAGA-GAAGACAGAATAAATATATTTCTGACATCATTCTCGATCC 1418
Query 1418 CATGCCTACCTTTTTCTCTATGATATTTAGTACAGAAACCACAGAGGTTTGGAGTTTTAC 1477
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1419 CATGCCTACCTTTTTCTCTATGATATTTAGTGCAGAAACCACAGAGGTTTGTTGTTTTAC 1478
Query 1478 ATTTCATTAAAAAGAGTTGGAGATGTTAGGTGGTTTTTCACATT-TA-A--A-ATA-A-T 1530
|||||||||||||||||||||||||||||||||| ||||||||| || | | ||| | |
Sbjct 1479 ATTTCATTAAAAAGAGTTGGAGATGTTAGGTGGTCTTTCACATTCTATATTACATATAAT 1538
Query 1531 ---CTCACTTGGAGATCTATTACATGAC 1555
|||| |||||||||||||||| |||
Sbjct 1539 AATCTCAATTGGAGATCTATTACAAGAC 1566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76756633305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5