BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481500
Length=1526
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26430.1 | Symbols: RCY1, ATRCY1 | arginine-rich cyclin 1 | ... 2098 0.0
AT4G05053.1 | Symbols: | pseudogene of ATRCY1 (arginine-rich c... 424 2e-117
> AT2G26430.1 | Symbols: RCY1, ATRCY1 | arginine-rich cyclin 1
| chr2:11243219-11246035 REVERSE LENGTH=1589
Length=1589
Score = 2098 bits (1136), Expect = 0.0
Identities = 1422/1553 (92%), Gaps = 47/1553 (3%)
Strand=Plus/Plus
Query 2 AAACTCGATTTCCCAATTTCGTCGCCTCTTCTCGTCTCTCCGCTCGCCTCACCGTGATTC 61
|||||||||||||| |||||||||||||||||||||||||||||| |||| ||| || ||
Sbjct 11 AAACTCGATTTCCCGATTTCGTCGCCTCTTCTCGTCTCTCCGCTCTCCTCGCCGCGAGTC 70
Query 62 TGTTTCGCCACCGTGTATCTCCCAATT-TGTTATCG-TGACCG-TT-GT---TTGATGAT 114
||||||||| |||| |||||||||||| || | || || | || || | ||||||
Sbjct 71 TGTTTCGCCGCCGTCTATCTCCCAATTCCGTGACCGTTG-TTGTTTAGTGAATCGATGAT 129
Query 115 TTACACTGCAATCGACAATTTCTACCTAACCGACGAGCAGCTGAAGGCTTCACCTTCCAG 174
||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||| ||
Sbjct 130 TTACACTGCTATCGACAATTTTTACCTATCCGACGAGCAGCTGAAGGCTTCACCTTCGAG 189
Query 175 GAAAGATGGGATAGATGAAA-ATACTGAAATCTCTCTTAGAATCTATGGATGTGATCTTA 233
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct 190 GAAAGATGGGATAGATGAAACA-ACTGAAATCTCTCTTAGAATCTATGGATGTGATCTCA 248
Query 234 TCCAAGAGGGTGGCATATTGCTCAAACTACCACAGGCGGTTATGGCTACTGGGCAGGTTC 293
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 249 TCCAAGAGGGTGGAATATTGCTCAAACTACCACAGGCAGTTATGGCTACTGGGCAGGTTC 308
Query 294 TGTTTCACCGATTCTATTGCAAGAAGTCTTTGGCTAAATTTGATGTAAAGATAGTTGCTG 353
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 309 TGTTTCAGCGATTCTATTGCAAGAAGTCTTTGGCTAAATTTGATGTCAAGATAGTTGCTG 368
Query 354 CGAGCTGTGTCTGGCTTGCATCAAAACTGGAAGAAAACCCTAAAAAAGCTAGACAGGTCA 413
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 CCAGCTGTGTATGGCTTGCATCAAAACTGGAAGAAAACCCTAAAAAAGCTAGACAGGTCA 428
Query 414 TCATCGTATTCCACAGGATGGAGTGTCGCAGGGAGAACTTACCATTAGAACATCTCGATA 473
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 429 TCATCGTATTCCACAGGATGGAGTGTCGCAGGGAGAACTTGCCATTAGAACATCTGGATA 488
Query 474 TGTATGCCAAGAAGTTCTCTGAGTTGAAAGTTGAATTAAGCAGAACTGAGAGACATATAC 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 TGTATGCCAAGAAGTTCTCTGAGTTGAAAGTTGAATTAAGCAGAACTGAGAGACATATAC 548
Query 534 TGAAAGAGATGGGTTTTGTTTGTCATGTTGAACATCCTCACAAGTTCATATCAAACTACC 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 TGAAAGAGATGGGTTTTGTTTGTCATGTTGAACATCCTCACAAGTTCATATCAAACTACC 608
Query 594 TTGCCACACTAGAAACACCTCCAGAATTGAGGCAAGAAGCTTGGAATTTGGCTAATGATA 653
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 609 TTGCCACATTAGAAACACCTCCAGAATTGAGGCAAGAAGCTTGGAATTTGGCCAATGATA 668
Query 654 GTCTGCGTACAACCCTCTGTGTAAGGTTCAGAAGTGAGGTTGTGGCTTGTGGGGTCGTGT 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 669 GTCTGCGTACAACCCTCTGTGTAAGGTTCAGAAGTGAGGTTGTGGCTTGTGGGGTAGTGT 728
Query 714 ATGCTGCTGCCCGTAGGTTTCAAGTACCTCTTCCAGAGAATCCACCCTGGTGGAAAGCAT 773
|||||||||||||||||||||||||||| || || |||||||| || |||||||||||||
Sbjct 729 ATGCTGCTGCCCGTAGGTTTCAAGTACCACTCCCTGAGAATCCGCCGTGGTGGAAAGCAT 788
Query 774 TTGATGCAGATAAATCTAGTATTGACGAAGTGTGTAGAGTTCTTGCTCACTTATACAGTC 833
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 789 TTGATGCAGATAAATCTAGTATTGACGAAGTGTGTAGAGTTCTTGCTCATTTATACAGTC 848
Query 834 TTCCAAAGGCTCAGTATATCTCTGTTTGCAAGGATGGGAAGCCATTTACCTTTTCCAGCA 893
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 849 TTCCAAAGGCTCAGTATATCTCTGTTTGCAAGGATGGGAAGCCATTTACATTTTCTAGCA 908
Query 894 GATCTGGGAATTCTCAAGCTCAATCAGCTACAAAGGATGTGTTGCCGGGAGTAGGGGAGG 953
|||| ||||||||||||| ||||||||| ||||||||| |||||||||||| ||| ||||
Sbjct 909 GATCCGGGAATTCTCAAGGTCAATCAGCGACAAAGGATCTGTTGCCGGGAGCAGGCGAGG 968
Query 954 CTGTTGATAC-AAAGTGTGCTCCAGGATCAGCTAATAACGACTCGAAGGATGGAATGGTT 1012
|||||||||| ||| ||| || ||||||||||||||||||||| ||||||||||||||||
Sbjct 969 CTGTTGATACTAAA-TGTACTGCAGGATCAGCTAATAACGACTTGAAGGATGGAATGGTT 1027
Query 1013 ATTTCGCCTCACGCAAAGGGTACAGATTCAAAGAAGAGCGATACTGAGTCAAACAGC-CA 1071
| | | || |||| ||||| ||||||||| ||||| || | ||| ||||||||| | ||
Sbjct 1028 ACTACACCACACGAAAAGGCTACAGATTCCAAGAAAAGTGGTACCGAGTCAAACT-CTCA 1086
Query 1072 GCCAATAGTAGGAGACTCGAGGAACGGAAA-AAGTAAAGTTGgagagagagaaagagaga 1130
|||||| ||||||||||| || | | ||| ||||||||| ||||| |||||||||||||
Sbjct 1087 GCCAATTGTAGGAGACTCAAGCTATG-AAAGAAGTAAAGTAGGAGATAGAGAAAGAGAGA 1145
Query 1131 gtggtagagagaaggaacgaggtagagagagGGACAGGGCTAGGTCTCACAGAGGCAGAG 1190
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1146 GTGATAGAGAGAAGGAACGAGGTAGAGAGAGGGACAGGGGTAGGTCTCACAGAGGCAGAG 1205
Query 1191 ATTCTGACA-AGGAGAGTGATAGGGAGAGAGACAACCTCAAAGATCGGAGTCATCACCGG 1249
||||||||| || | |||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 1206 ATTCTGACAGAG-ACAGTGATAGGGAGAGAGACAAACTCAAAGATCGAAGTCATCATCGG 1264
Query 1250 TCAAGAGATAGATTGAAGGATTCAG----A--T--AGAT----CAAGACATCACTCTTCT 1297
|||||||| |||||||||||||||| | | |||| |||| ||||| ||||||
Sbjct 1265 TCAAGAGACAGATTGAAGGATTCAGGTGGACATTCAGATAAATCAAGGCATCATTCTTCT 1324
Query 1298 CGGGACCGTGACTATCGAGAATCCTCCCACTCATCAAAAGACCGTCGTAGGCACCATTAA 1357
|||||||||||||| || || | || | || ||| |||||||||||||||||||||
Sbjct 1325 CGGGACCGTGACTACCGCGA--C-TC--A-TCG--AAA-GACCGTCGTAGGCACCATTAA 1375
Query 1358 GCCAATCTTCTTGTCA-CTACATCACCTTGAGTGTACTTGATGTTAAAGACAGTATATTG 1416
|||||||||||||||| ||||||| ||||||| ||||||||||||| ||||||||| ||
Sbjct 1376 GCCAATCTTCTTGTCATCTACATCCCCTTGAGCCTACTTGATGTTAA-GACAGTATAGTG 1434
Query 1417 TTGTATTGTGTTAAAGAGTCAAAAACCCATGTGTACTCAATCACATGCTAAGATCACGTT 1476
|||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1435 TTGTATTGTGTTAA-GAGTCAAAA-CCCATGTGTACTTAATCACATGCTAAGATCACGTT 1492
Query 1477 GGTTCGACATATAAAATCGA-AAAGGTCTGATCT-TT-CTAATTTGGTATTTT 1526
|||||||||||||||||||| |||| |||||| | || ||||||||| |||||
Sbjct 1493 GGTTCGACATATAAAATCGAGAAAG-TCTGATATGTTTCTAATTTGGAATTTT 1544
> AT4G05053.1 | Symbols: | pseudogene of ATRCY1 (arginine-rich
cyclin) | chr4:2589637-2590097 FORWARD LENGTH=461
Length=461
Score = 424 bits (229), Expect = 2e-117
Identities = 260/274 (95%), Gaps = 5/274 (2%)
Strand=Plus/Plus
Query 599 ACACTAGAAACACCTCCAGAATTGAGGCAAGAAGCTTGGAATTTGGCTAATGATAGTCTG 658
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 ACACTAGAAACACCTCCGGAATTGAGGCAAGAAGCTTGGAATTTGGCTAATGATAGTCTG 176
Query 659 CGTACAACCCTCTGTGTAAGGTTCAGAAGTGAGGTTGTGGCTTGTGGGGTCGTGTATGCT 718
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 177 CGTACAACCCTTTGTGTAAGGTTCACAAGTGAGGTTGTGGCTTGTGGGGTCGTGTATGCT 236
Query 719 GCTGCCCGTAGGTTTCAAGTACCTCTTCCAGAGAATCCACCCTGGTGGAAAGCATTTGAT 778
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 237 GCTGCACGTAGGTTTCAAGTACCTCTCCCAGAGAATCCACCCTGGTGGAAAGCATTTGAT 296
Query 779 GCAGATAAATCTAGTATTGACGAAGTGTGTAGAGTTCTTGCTCA-CTTATACAGTCTTCC 837
||||||||||||||||||||| |||||||||||||||| ||||| || ||||| ||||||
Sbjct 297 GCAGATAAATCTAGTATTGACCAAGTGTGTAGAGTTCTAGCTCATCT-ATACACTCTTCC 355
Query 838 AAAGGCTCAGTATATCTC-T--GTTTGCAAGGAT 868
||||||| |||||||||| | ||||||||||||
Sbjct 356 AAAGGCTTAGTATATCTCCTCTGTTTGCAAGGAT 389
Score = 174 bits (94), Expect = 2e-42
Identities = 107/113 (95%), Gaps = 2/113 (2%)
Strand=Plus/Plus
Query 456 CATTAGA-ACATCTCGATATGTATGCCAAGAAGTTCTCTGAGTTGAAAGTTGAATTAAGC 514
||||||| | |||| |||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 8 CATTAGATA-ATCTGGATAAGTATGCCAAGAAGTTCTCTGAGTTGAAATTTGAATTAAGC 66
Query 515 AGAACTGAGAGACATATACTGAAAGAGATGGGTTTTGTTTGTCATGTTGAACA 567
| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 ACAACTGAGAGACATATACTGAAAGAGATGGGTTTTGTTTGTCATGTTGAACA 119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75300817500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5