BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481501
Length=1640
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26440.1 | Symbols: | Plant invertase/pectin methylesterase... 2300 0.0
> AT2G26440.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr2:11247383-11249493 FORWARD LENGTH=1754
Length=1754
Score = 2300 bits (1245), Expect = 0.0
Identities = 1468/1577 (93%), Gaps = 10/1577 (1%)
Strand=Plus/Plus
Query 69 TTCTCTAAAACCTAATCAAACCTCT-CTAACAAGTTTCTGCATGAACACACCATATCCAA 127
||||||||| ||| || |||| ||| || ||||||||||||| |||||||||||||||
Sbjct 108 TTCTCTAAACCCTCATGAAACTTCTGCT-ACAAGTTTCTGCAAAAACACACCATATCCAG 166
Query 128 ATGCATGTTTCGA-CTCCTTAAAACTTTCCATCTCCATCAACATAAGCCCCAACATTCTC 186
|||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 167 ATGCATGTTT-TACCTCCTTAAAACTATCCATCTCCATCAACATAAGCCCCAACATTCTC 225
Query 187 TCTTTCCTCCTTCAAACCCTCCAAACAGCTCTTTCCGAGGCCGGAAAACTCACCGATCTT 246
||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 226 TCTTTCCTCCTCCAAACCCTCCAAACAGCTCTTTCCGAGGCTGGGAAACTCACCGATCTC 285
Query 247 CTTTCCGGAGCTGGAATCTCCAACAACCTCGTTGAGGGGCAACGTGGCTCTCTTCAAGAC 306
||||| || ||||| ||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 286 CTTTCTGGCGCTGGGGTCTCCAACAACCTAGTTGAGGGACAACGTGGCTCTCTTCAAGAC 345
Query 307 TGCAAAGATCTTCACCAGATCACTTCTTCCTTCTTAAAACGATCCATCTCCAAGATCCAA 366
||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 346 TGCAAAGATCTTCACCACATCACTTCTTCTTTCTTGAAACGATCAATCTCCAAGATCCAA 405
Query 367 GACGGTGTTAACGATTCAC-GAAAGCTAGCTGACGCTAGAGCGTACCTGAGCGCCGCTCT 425
||||||||||||||||||| |||| ||||| ||||||||||||||||| |||||||||||
Sbjct 406 GACGGTGTTAACGATTCACGGAAA-CTAGCCGACGCTAGAGCGTACCTAAGCGCCGCTCT 464
Query 426 CACCAACAAGATCACTTGCTTGGAAGGTCTTG-ATACAGCCTCTGGTCCTCTAAAGCCAA 484
||||||||||||||| |||||||||||||||| || ||||||| ||||| || |||||||
Sbjct 465 CACCAACAAGATCACATGCTTGGAAGGTCTTGAAT-CAGCCTCAGGTCCACTCAAGCCAA 523
Query 485 AGCTCGTGACCTCCTTCACGGA-AACTTACAAACACGTAAGCAACTCCCTCTCTGCTCTA 543
||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||
Sbjct 524 AGCTCGTGACCTCCTTCAC-GACCACTTACAAACACATAAGCAACTCCCTCTCTGCTCTT 582
Query 544 CCAAAACAGGGAAGAGCCACAAATCTGAAAACCGACGGCAAGACTAAGAACCGCCGGTTA 603
||||||||| ||||| ||||||||| ||||||| ||| || ||||||||||||||||||
Sbjct 583 CCAAAACAGAGAAGAACCACAAATCCAAAAACCGGCGGAAACACTAAGAACCGCCGGTTA 642
Query 604 TTTGGGTTATTACCTGACTGGGTCTCTAAGAAAGATCACCGGTTTTTAGAGGATTCTAGT 663
|||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 643 CTTGGGTTATTTCCTGACTGGGTCTATAAGAAAGATCACCGGTTTTTAGAAGATTCTAGC 702
Query 664 GACGGGTATGATGAGTACGACCCGAGTGAGATCATCGTGGTTGCTGCCGATGGAACAGGG 723
||||||||||||||||| ||||||||||||| | ||||||| ||||||||||||||||||
Sbjct 703 GACGGGTATGATGAGTATGACCCGAGTGAGAGCCTCGTGGTCGCTGCCGATGGAACAGGG 762
Query 724 AATTTTTCGACCATTAACGAGGCCATAAGCTTTGCTCCGGATATGAGTAACGACAGGGTA 783
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 763 AATTTTTCGACTATTAACGAGGCCATAAGCTTTGCTCCTAATATGAGTAACGACAGGGTG 822
Query 784 CTGATATATGTAAGGGAAGGTGTGTATGACGAGAACATTGAGATTCCGATCTACAAGACT 843
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 823 CTGATATATGTAAAGGAAGGTGTGTATGACGAGAACATTGATATTCCGATCTACAAGACT 882
Query 844 AATATTGTTCTGATCGGAGATGGATCCGATGTTACATTTATTACCGGAAACCGAAGTGTA 903
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 AATATTGTTTTGATAGGAGATGGATCCGATGTTACATTTATTACCGGAAACCGAAGTGTC 942
Query 904 GGAGATGGATGGACCACTTTCCGATCTGCTACTCTTGCGGTTTCGGGCGAAGGATTCTTG 963
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 943 GGAGATGGATGGACCACTTTCCGATCTGCTACTCTTGCGGTTTCCGGCGAAGGATTCTTG 1002
Query 964 GCGAGGGACATGATGATAACGAACACAGCGGGACCCGAGAAGCATCAAGCGGTTGCGTTA 1023
|||||||| || |||||||| |||||||| |||||||||||||| ||||||||||| ||
Sbjct 1003 GCGAGGGATATAATGATAACAAACACAGCAGGACCCGAGAAGCACCAAGCGGTTGCACTA 1062
Query 1024 CGTGTGAACGCGGATTTTGTGGCCTTATATCGATGTGTCATTGATGGTTACCAGGACACA 1083
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1063 CGAGTGAACGCGGATTTTGTGGCCTTATACCGATGTGTCATTGATGGTTACCAGGACACA 1122
Query 1084 CTTTACACCCACTCATTCCGACAATTCTACCGCGAATGCGATATTTATGGAACCATTGAT 1143
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1123 CTTTACACCCACTCATTCCGACAATTCTACCGTGAATGCGATATTTATGGAACCATTGAT 1182
Query 1144 TATATCTTTGGGAACGCGGCCGTGGTCTTCCAGGGATGCAACATCGTTTCAAAGTTGCCT 1203
||||||||||| ||||| ||||| |||||||| || || |||||||||||||||||||||
Sbjct 1183 TATATCTTTGGAAACGCAGCCGTTGTCTTCCAAGGCTGTAACATCGTTTCAAAGTTGCCT 1242
Query 1204 ATGCCAGGACAATTCACTGTAGTAACTGCTCAATCACGGGACAGTCCCGACGAAGACACC 1263
||||||||||||||||| ||| | |||||||| ||||| |||| || |||||||| |||
Sbjct 1243 ATGCCAGGACAATTCACGGTAATTACTGCTCAGTCACGAGACACTCAGGACGAAGATACC 1302
Query 1264 GGGATCTCGATGCAAAACTGCTCCATTCTTGCATCGGATGATTTATTTAACAGCTCAAAT 1323
|||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||
Sbjct 1303 GGGATCTCGATGCAAAACTGCTCCATCCTTGCGTCGGAGGATTTATTTAATAGCTCAAAT 1362
Query 1324 AGAGTAAAGAGCTACTTGGGACGTCCGTGGAGAGGATTTTCAAGAACAGTTCTAATGGAA 1383
| ||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1363 AAAGTGAAGAGCTACTTGGGACGTCCGTGGAGAGAATTTTCAAGAACAGTTGTAATGGAA 1422
Query 1384 TCTTATATTGATGAGTTTATTGACGGTTCGGGTTGGAGCAAATGGAACGGTAGGGAAGGA 1443
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1423 TCTTATATTGATGAGTTTATTGACGGTTCGGGTTGGAGCAAATGGAACGGTGGGGAAGCA 1482
Query 1444 CTTGATACCCTTTACTATGGCGAGTATAACAATAACGGGCCGGGTTCTGAAACGGGTAAA 1503
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1483 CTTGATACCCTTTACTATGGCGAGTATAACAATAACGGTCCGGGTTCTGAAACGGTTAAA 1542
Query 1504 CGGGTTAACTGGCCGGGTTTTCACATTATGGGTTACGAAGATGCCTTTAACTTCACGGCA 1563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1543 CGGGTTAACTGGCCGGGTTTTCACATTATGGGTTACGAAGATGCCTTTAACTTCACGGCA 1602
Query 1564 ACAGAGTTTATCACCGGTGATGGTTGGTTGGGTAGTACTTCGTTCCCTTATGATAATGGA 1623
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1603 ACAGAGTTTATCACTGGTGATGGTTGGTTGGGAAGTACTTCGTTCCCTTATGATAATGGA 1662
Query 1624 ATTTAACAACttttttt 1640
|||||||| |||||||
Sbjct 1663 ATTTAACATTTTTTTTT 1679
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81023679630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5