BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481505
Length=1633
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26470.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 2119 0.0
> AT2G26470.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF159 (InterPro:IPR003738);
Has 3646 Blast hits to 3636 proteins in 1001 species:
Archae - 41; Bacteria - 1922; Metazoa - 142; Fungi - 125; Plants
- 44; Viruses - 14; Other Eukaryotes - 1358 (source: NCBI
BLink). | chr2:11259153-11262494 REVERSE LENGTH=1759
Length=1759
Score = 2119 bits (1147), Expect = 0.0
Identities = 1500/1661 (90%), Gaps = 62/1661 (4%)
Strand=Plus/Plus
Query 1 ATGTGCGGTAGGACTCGCTGCACATTGAGACCTGACGATGTCCCAAGAGCTTCTCACCGC 60
||||||||||||||||| || || || ||||| ||||||||||| |||||||||||||||
Sbjct 133 ATGTGCGGTAGGACTCGATGTACTTTAAGACCCGACGATGTCCCCAGAGCTTCTCACCGC 192
Query 61 CACACCGTTCCTACCCG-TTTCCTTCACCTGGACCGTTATCGTCCATCTTACAATGTTGC 119
||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||
Sbjct 193 CACACCGTTCCTACCCGATTT-CTTCACCTCGACCGTTATCGTCCATCTTACAATGTTGC 251
Query 120 CCCTGGATCCTATATACCTGTTCTGCGTAGAGACAAT---GAAGTAGTTGGTGATGGTGT 176
|||||||||||||||||||||||| || ||||||||| ||||| ||||||||||||||
Sbjct 252 CCCTGGATCCTATATACCTGTTCTACGGAGAGACAATGAAGAAGTTGTTGGTGATGGTGT 311
Query 177 TGTTGTTCATTGTATGAAGTGGGGATTAGTCCCTAGTTTCACTAAGAAAACTGATAAGCC 236
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 312 TGTTGTTCATTGTATGAAGTGGGGATTAGTGCCAAGTTTCACTAAGAAAACTGATAAGCC 371
Query 237 AGATTTCTTCAAAATGTTTAATGCTCGGTCTGAATCGGTAGCTGAGAAACCGTCTTTTCG 296
||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||
Sbjct 372 TGATTTCTTCAAAATGTTTAATGCTCGGTCTGAATCTGTGGCTGAGAAAGCGTCTTTTCG 431
Query 297 TCGATTGCTTCCCAAGAATAGGTGCCTAGTTGCAGTTGATGGGTTCTATGAGTGGAAGAA 356
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 432 TCGATTGCTTCCCAAGAATAGGTGCCTTGTTGCAGTTGATGGGTTCTATGAGTGGAAGAA 491
Query 357 GGAAGGTTCAAAAAAGCAACCGTACTACATCCATTTTGAGGATGGGAGACCTCTCGTATT 416
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 492 GGAAGGTTCAAAAAAGCAACCCTACTACATCCATTTTGAGGATGGGAGACCTCTCGTATT 551
Query 417 TGCTGCTCTTTTTGATACTTGGCAGAACTCAGGAGGTGAGACACTTTACACCTTCACGAT 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 552 TGCTGCTCTTTTTGATACTTGGCAGAACTCAGGAGGTGAGACACTTTACACCTTTACGAT 611
Query 477 TTTAACAACCACTTCCTCTTCAGCCCTCCAATGGCTCCATGACAGAATGCCAGTAATTCT 536
||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 612 TTTGACAACCGCTTCCTCTTCAGCCCTCCAATGGCTCCATGACAGAATGCCTGTAATTCT 671
Query 537 GGGTGACAAGGATTCAGTCGACACATGGTTAGATGATCCCTCGACGACGAAACTGCAGCC 596
||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 672 TGGTGATAAGGATTCAATCGACACATGGTTAGATGATCCCTCGACAACGAAACTGCAGCC 731
Query 597 ATTACTTTCACCATATGAAAAATCGGATTTGGTATGGTATCCAGTAACTTCTGCAATTGG 656
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 732 ATTACTTTCACCATATGAAAAATCGGATTTGGTATGGTATCCAGTAACCTCTGCAATTGG 791
Query 657 TAAACCAACGTTTGATGGACCAGAGTGTGTTCAACAGATACCGTTAAAGGCTTCACAAAA 716
|||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct 792 TAAACCAACGTTTGATGGACCAGAGTGTATTCAACAGATACCGCTAAAGACTTCACAAAA 851
Query 717 TAGCTTGATCTCGAAGTTTTTCTC------GC-GC--AAAACAGAAGAAGGAGACAAAGA 767
|||||||||||||||||||||||| || || |||||||| ||||||||||||||
Sbjct 852 TAGCTTGATCTCGAAGTTTTTCTCAACAAAGCAGCCCAAAACAGATGAAGGAGACAAAGA 911
Query 768 AACCAAATCGACTGATGCAAATATC-TCAGTTGATTTGAAAGAGGAACCTACGGTTGAAG 826
||||||||| || |||||||||||| | ||||||||||||| |||||||||||| ||||
Sbjct 912 AACCAAATCAACAGATGCAAATATCAT-AGTTGATTTGAAAAAGGAACCTACGGCTGAAA 970
Query 827 GTTATGAAGAGGCCACATTTTCTGACAGCGTAAAGAAAATTGAAGAACTAGGCGGGGAGA 886
| | || | || |||||||||||| | ||||||||||||||||||| ||||||||
Sbjct 971 ---A-G--GA--C-ACGTTTTCTGACAGCATTAAGAAAATTGAAGAACTAGACGGGGAGA 1021
Query 887 AAGATATATCGAATGAAGCCAAAAAGCTGG-GTTTTCAAGAGATTGTGAAAGCAGAACCA 945
||||||| ||||||| ||||||||| |||| |||| ||||||||||||||||||||||||
Sbjct 1022 AAGATATGTCGAATGTAGCCAAAAATCTGGAGTTT-CAAGAGATTGTGAAAGCAGAACCA 1080
Query 946 TTTACTGAAGATAACTCAGCAGTTGCATCCCATCCCGAACCTGTAAAGAATGAAGTTGAG 1005
||| ||||||||||||||||||||| || | ||| ||||||||||||||||| ||| ||
Sbjct 1081 TTTGTTGAAGATAACTCAGCAGTTGCGTCACTTCCTGAACCTGTAAAGAATGATGTTCAG 1140
Query 1006 GAGGGTACAATTGAAGAAGGCAAATCCCTAAAGACTTGTCTTACTAAAGAAACAGGTGAG 1065
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1141 GAGGGTACAAAGGAAGAAGGCAAATCCCTAAAGACTGGTCTTACTAAAGAAACAGGTGAG 1200
Query 1066 AGCAATGCCAGTATACCGGCTGAGTCCTACAACCTTGATCTCCAAAGAATCTCAAAAGAA 1125
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1201 AGCAGTGCCAGTATACCGGCTGAGTCCTACATCCTTGATCTCCAAAGAATCTCAAAAGAA 1260
Query 1126 GAACCCGAAACCCAAGGC--T--TTACTA-A----AGATAAG-GAATTGAATCACCCGCA 1175
|||||||| || ||| || | || || | |||| || || |||||||| | |||
Sbjct 1261 GAACCCGAGACTCAAAGCCATCATTTCTTTACTGCAGATGAGAGA-TTGAATCAGCTGCA 1319
Query 1176 TGAGGTTGTTGAAGATGAA-CCAGGAAATGAAAACCTA-AAGACAGTTTTAACTTGCCCG 1233
||||| ||| |||||| | |||||||||||||||| | ||||||||||||||| |||||
Sbjct 1320 TGAGGCTGTCGAAGAT-ATTCCAGGAAATGAAAACC-AGAAGACAGTTTTAACTAGCCCG 1377
Query 1234 ACCACGATGGAAGGTGTCTTAGAGTTTAGTGAGAAGTCTCCAGAAAAGAGGATGAGTGGG 1293
|| |||| |||||||| ||||| |||||| | |||||||| || | |
Sbjct 1378 ACGACGAAGGAAGGTGGCTTAGTGTTTAG--------C----GAAAAGAG--TG-G-G-- 1419
Query 1294 ACAAAGCGAGACTATGAGGTATTCTCAGCTCAAGAAAAGCCACGGAAACACTCTGAGAGG 1353
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1420 ACAAAGCGAGACTATGAGGTATTCTCAGCTCAAGAAAAGCCACAGAAACACTATGAGAGG 1479
Query 1354 TTGCAAAATGTTATAAGTAGTGGGAAACACGGAAGGAACCAAGGAAAGGGGAAATCTAAC 1413
||||||||||||| ||| ||||||||||| |||| || || |||| |||||||||||||
Sbjct 1480 TTGCAAAATGTTAAAAGCAGTGGGAAACAAGGAAAGATGCATGGAATGGGGAAATCTAAC 1539
Query 1414 ATCAAAAAACCTAAGGAGACGCAGTCTACGTTACATTTCTTTTTCGATGAGAAATAGTTC 1473
||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1540 ATCAAGAAATCTAAGGAGACGCAGTCTACATTACATTTCTTTTTCGATGAGAAATAGTTT 1599
Query 1474 -GAGTCTACGGAACATCTATGAGAACCATTTTGGGCTACTTTGGTTGTCGATAATGTTAG 1532
|||||||| |||||||||||| ||||| |||| ||||||| ||||| |||||||||||
Sbjct 1600 TGAGTCTACATAACATCTATGAGGACCATGTTGGCCTACTTTTGTTGTAGATAATGTTAG 1659
Query 1533 ATAGGTACCGTCGTTTTTGGAATGTTGCTTATATTGTATATGTAGTGTTTGATCTTTGAT 1592
||| | ||| ||||||| |||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1660 ATAAG-ACCATCGTTTTGGGAATGTTGCTTGTATTGTATGTGTAGTGTTTGATCTTTGAT 1718
Query 1593 CTAAGGTAATAGTATTATGAATGAATTGGGTTTTTAATGTC 1633
||||||||||| |||||||||||||||||||||||||||||
Sbjct 1719 CTAAGGTAATATTATTATGAATGAATTGGGTTTTTAATGTC 1759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80672275815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5