BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481510
Length=1982
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26510.1 | Symbols: PDE135 | Xanthine/uracil permease family... 2872 0.0
> AT2G26510.1 | Symbols: PDE135 | Xanthine/uracil permease family
protein | chr2:11273911-11277630 FORWARD LENGTH=2029
Length=2029
Score = 2872 bits (1555), Expect = 0.0
Identities = 1886/2036 (93%), Gaps = 62/2036 (3%)
Strand=Plus/Plus
Query 1 CAAATCAAACAAGTGACTTTTTATACTTATC---TTAATTCTGTAGTCTCGAGATTCGCT 57
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 2 CAAATCAAACAAGTGACTTTTTATATTTATCTTATTAATTCTGTAGTCTCGAGATTCGCT 61
Query 58 TTTTCTCCTGCTAACTTCTTTTTATCATCTTC-CTTTGTCGGTTTGATTTGGAAAAACTT 116
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 62 TTTTCTCCTGCTTACTTCTTTTTATCATCTTCTCTTTGTCGGTTTGATTTGGAAAAACTT 121
Query 117 TCTGCAAAAAGAAGATAGATTCTTAAACTTTTTATCTCAAGATCCTTTCaaaaaaactaa 176
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||| || |
Sbjct 122 TCTGCAAAAAAAAGAGAGATTCTTAAACTTTTTATCTCAAGATCCTTTCAAAAAATCTGA 181
Query 177 aaaGAGAAGA-TTTTAATTAATAACAATGGTTGAAACTGGTCA-C--CATCAACATCCAC 232
|||||||||| ||||||| || || |||||||||||||||||| | |||||||||||||
Sbjct 182 AAAGAGAAGATTTTTAATAAAAAAGAATGGTTGAAACTGGTCACCATCATCAACATCCAC 241
Query 233 CGGCACCGGCTGCAGCCGGTCATCCGCCGGTTCCATCCATGGCGATGGC-CGTTAGCA-G 290
||||||||||||||||||||||||||||||||||||||||||||||||| || || || |
Sbjct 242 CGGCACCGGCTGCAGCCGGTCATCCGCCGGTTCCATCCATGGCGATGGCGCG-TAACATG 300
Query 291 AGGACCCACTTGGCCACCGGCGGAGCAACTTCATCATCTTCAATATTGCATCCACTCTAA 350
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 -GGAACCACTTGGCCTCCGGCGGAGCAACTTCATCATCTTCAATATTGCATCCACTCTAA 359
Query 351 TCCTTCTTGGCATGAGACGGTTGTTCTGGCTTTCCAGCATTACATCGTTATGCTCGGGAC 410
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 CCCTTCTTGGCATGAGACGGTTGTACTGGCTTTCCAGCATTACATCGTTATGCTCGGGAC 419
Query 411 TACTGTTTTGATTGCCAACACACTAGTGCCACCAATGGGTGGAGATGCTGGTGATAAAGC 470
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 420 TACTGTTTTGATTGCCAACACACTAGTGTCACCAATGGGTGGAGATCCTGGTGATAAAGC 479
Query 471 GCGGGTTATCCAGACTATATTGTTTATGTCGGGAATTAACACGTTGCTACAAACGCTTAT 530
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 480 GCGGGTTATCCAGACTATATTGTTTATGTCGGGCATAAACACGTTGCTACAAACGCTTAT 539
Query 531 AGGGACAAGGCTTCCCACGGTTATGGGCGTTTCGTTCGCGTATGTTCTTCCTGTATTGTC 590
|||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 540 CGGGACAAGGCTTCCCACGGTTATGGGAGTATCGTTCGCGTATGTTCTTCCCGTATTGTC 599
Query 591 TATAATCAGAGATTACAATGACGGTCAATTTGATTCCGAGAAGCAGAGATTCCGACATAC 650
|||||||||||||||||| | |||||||| ||||||||||| |||||||||||||||||
Sbjct 600 TATAATCAGAGATTACAACAATGGTCAATTCGATTCCGAGAAACAGAGATTCCGACATAC 659
Query 651 TATGAGAACCGTTCAAGGATCACTAATCATTTCCTCATTCGTCAACATCATAATCGGATA 710
||||||||| || ||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 660 TATGAGAACGGTACAAGGATCATTAATCATTTCTTCATTCGTCAACATCATAATCGGATA 719
Query 711 TGGTCAGGCATGGGGGAACTTAATAAGAATCTTTACTCCCATCATTGTTGTACCAGTTGT 770
||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||
Sbjct 720 TGGTCAGGCATGGGGGAACTTAATAAGAATCTTTAGTCCCATCATTGTTGTGCCCGTTGT 779
Query 771 TTCCGTTGTGA------G------CCTT---GG-----C-CT-CTTGCAAACTGTGTTGG 808
||| ||||||| | |||| || | || ||||||||||||| |||
Sbjct 780 TTCTGTTGTGAGCCTTGGCCTATTCCTTAGAGGCTTCCCACTGCTTGCAAACTGTG-TGG 838
Query 809 AAATCGGTCTACCAATGCTGATTTTGTTGATCATCTCACAGCAATATCTTAAA-AGTGTC 867
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | || |
Sbjct 839 AAATCGGTCTACCAATGCTGATTCTGTTGATCATCACACAGCAATATCTTAAACA-TG-C 896
Query 868 -TTCTCAAGGATTTCTGCGATACTTGAAAGATATGCTTTACTTGTTTGCCTGGCTATCAT 926
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 897 ATTCTCAAGGATTTCTATGATTCTTGAAAGATATGCTTTACTTGTTTGCCTGGCTATCAT 956
Query 927 ATGGGCTTTTGCTGCTATCCTTACTGTTTCTGGTGCTTATAACAATGTTTCTACTACGAC 986
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct 957 ATGGGCTTTTGCTGCTATCCTTACTGTTTCTGGTGCTTATAATAATGTTTCTACCGCAAC 1016
Query 987 AAAACAAAGTTGTCGCACGGATCGTGCCTTTCTTATGTCATCAGCTCCCTGGATTAGAAT 1046
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 AAAACAAAGTTGTCGAACTGATCGTGCCTTTCTTATGTCATCAGCTCCCTGGATTAGAAT 1076
Query 1047 CCCATATCCGTTCCAGTGGGGGACTCCGATATTCAAAGCGAGTCATGTTTTTGGAATGTT 1106
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CCCATATCCATTCCAGTGGGGGACTCCGATATTCAAAGCGAGTCATGTTTTTGGAATGTT 1136
Query 1107 TGGTGCTGCGATTGTCGCATCTGCAGAGTCTACCGGTGTATTTTTCGCTGCATCTAGACT 1166
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1137 TGGTGCTGCAATTGTCGCATCTGCAGAGTCTACCGGAGTATTTTTCGCTGCATCTAGACT 1196
Query 1167 AGCAGGAGCAACAGCGCCTCCAGCACACGTTGTGTCTCGTAGTATCGGGCTACAGGGTAT 1226
||||||||||||||||||||||||||| || || |||||||||||||| |||||||||||
Sbjct 1197 AGCAGGAGCAACAGCGCCTCCAGCACATGTCGTCTCTCGTAGTATCGGTCTACAGGGTAT 1256
Query 1227 TGGTGTGCTCCTTGAAGGAATATTTGGTTCCATTAGTGGCAATACCGCTTCCGTGGAAAA 1286
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1257 TGGTGTGCTCCTTGAAGGAATATTTGGTTCCATTACTGGCAATACCGCGTCCGTGGAAAA 1316
Query 1287 TGTTGGTCTCCTTGGCCTCACACGAATAGGGAGTAGACGAGTGGTGCAGATTTCAACGGG 1346
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1317 TGTCGGTCTCCTTGGCCTCACACGAATAGGGAGTAGACGAGTGGTGCAGGTTTCAACGTT 1376
Query 1347 TTTCATGATATTTTTCTCCATATTTGGAAAATTCGGTG-GCTTCTTTGCGTCTATCCCGC 1405
||||||||||||||||||||||||||||||||| || | | |||||||||||||| ||||
Sbjct 1377 TTTCATGATATTTTTCTCCATATTTGGAAAATTTGGCGCG-TTCTTTGCGTCTATTCCGC 1435
Query 1406 TTCCAATCTTTGCAGGCATATACTGTATACTACTTGGAATTGTTGTTGCTGTTGGAATAT 1465
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1436 TTCCAATCTTTGCAGGCGTATACTGTATACTACTTGGAATCGTTGTTGCTGTTGGAATAT 1495
Query 1466 CGTTTATACAGTTTACTGACA-TCAATTCAATGAGAAACATGTACGTCATCGGTGTCTCT 1524
|||||||||||||||| |||| | ||||| |||||||||||||||||||| |||||||||
Sbjct 1496 CGTTTATACAGTTTACCGACACT-AATTCGATGAGAAACATGTACGTCATTGGTGTCTCT 1554
Query 1525 CTCTTTTTAAGTCTTTCCATCGCTCAGTACTTTCTTGCCAACACTTCAAGAGCAGGATAT 1584
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CTCTTCTTAAGTCTTTCCATCGCTCAGTACTTTCTTGCCAACACTTCAAGAGCAGGATAT 1614
Query 1585 GGACCGGTTAGAACAGCAGGTGGATGGTTCAATGATATACTTAACACAATATTTGCTTCG 1644
||||| ||||| |||||||| ||||||||||| ||||||||||| || ||||||||||||
Sbjct 1615 GGACCAGTTAGGACAGCAGGAGGATGGTTCAACGATATACTTAATACGATATTTGCTTCG 1674
Query 1645 GCTCCTTTGGTGGCAACCATTCTTGCGACCATACTAGATAACACGTTGGAAGCAAGACAT 1704
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 GCTCCGTTGGTGGCGACCATTCTTGCGACCATACTAGATAACACGTTGGAAGCAAGACAT 1734
Query 1705 GCAAGTGA-G--GCAAGAGGAATCTCATGGTGGAAGCCCTTCCAGCACAGGAACGGAGAC 1761
|||||||| | |||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1735 GCAAGTGACGACGCAAGAGGAATCCCGTGGTGGAAGCCCTTCCAGCACAGGAACGGAGAC 1794
Query 1762 ACCAGGAACGATGAGTTCTATAGTATGCCCCTTAGAATCAACGAGTTAATACCGACGCGG 1821
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1795 GGCAGGAACGATGAGTTCTATAGTATGCCCCTTAGAATCAACGAGTTAATGCCGACACGG 1854
Query 1822 TTCCTTTGAA-AC--CCC-TGAACGTTTCTTCTGTGTTTGGAAATGTAAGATATG-T--- 1873
|||||||||| || ||| |||||||||||||||| ||||||||||||||||||| |
Sbjct 1855 TTCCTTTGAAGACTGCCCCTGAACGTTTCTTCTGTATTTGGAAATGTAAGATATGATTAT 1914
Query 1874 G--CATATCTTGTAGCTTCATTGGGGAAAGATTGAGTCCAATGGATACAAAATGAACATA 1931
| |||| ||||||||||||||||||||| |||||||||| |||||||||| ||||||||
Sbjct 1915 GTGCATACCTTGTAGCTTCATTGGGGAAAAATTGAGTCCAGTGGATACAAA-TGAACATA 1973
Query 1932 GGCCTTTGATGGAGAAAGCTATTTTA---CAAACTATA-A-CTTGTGTTACTAGAT 1982
||||||||||||| ||||||||||| ||||||||| | |||||||||||||||
Sbjct 1974 GGCCTTTGATGGAAAAAGCTATTTTTTTGCAAACTATATAACTTGTGTTACTAGAT 2029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98192266020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5