BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481513
Length=1344
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26530.1 | Symbols: AR781 | Protein of unknown function (DUF... 1882 0.0
> AT2G26530.1 | Symbols: AR781 | Protein of unknown function (DUF1645)
| chr2:11282775-11284229 REVERSE LENGTH=1455
Length=1455
Score = 1882 bits (1019), Expect = 0.0
Identities = 1227/1323 (93%), Gaps = 32/1323 (2%)
Strand=Plus/Plus
Query 20 ATGTTGCCAAAAGTTGATTTTTATATTATATGTTTAATTTGGTCAGCGAAAACGGTCT-A 78
|||||||||||||||| ||||||||||||||| ||||||||||||||||||| | |
Sbjct 84 ATGTTGCCAAAAGTTGTTTTTTATATTATATG-----TTTGGTCAGCGAAAACGGTTTAA 138
Query 79 AG--TTCTCCCTTTCCTCTCGGCTTCCTTTGATGATCCTTTTTAGTTCCCTTCTTCTCAT 136
|| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 139 AGCACTCTCTCTTTCCTCTCGCCTTCCTTTGATGATCCTTTTTAGTTCCCTTCTTCTCAT 198
Query 137 TGCTCTTGAGACCATCTCCGAACTCAACGGAAATC-AGAAACAATGGAAGTGATGAGTTT 195
||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||| ||
Sbjct 199 TGCTCTTGAGACCATCTCCGAACTCAAAGGAAA-CTAGAAACAATGGAAGTGATGAGCTT 257
Query 196 GACTGCTCCATCTTCACCGAGACAATTCTCCGGGTGCTTCTTAAGCGCACCAACAAGCCC 255
|||||| |||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 258 GACTGCCCCATCTTCACCGAGACAATTATCTGGCTGCTTCTTAAGCGCACCAACAAGCCC 317
Query 256 TAGAAGAATCACTGAGTTTTACAGAGAGTTTGAAGAGGCCACAACAAGAAACTTCTCCGA 315
||||||| ||| ||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 318 TAGAAGATTCAATGAGTTTTATAGAGAGTTTGAAGAGGCCGCAACAAGAAACTTCTCCGA 377
Query 316 CCGTCTTACGGTTCCTTTTGATTGGGAAGAGACTCCAGGCACTCCTAGGACGATCATCAA 375
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||
Sbjct 378 CCGTCTTACGGTTCCTTTTGATTGGGAAGAGACTCCAGGCACGCCTAGGAAGATCACCAA 437
Query 376 CGATGACGAGGAAGATACTGTGGATGATTTCGCTTTCGAGATTGGTGGGAAACTCGAAAC 435
|||||| || || |||| | ||||||||||||||||||||||||||||||||||||
Sbjct 438 CGATGATGATGATGATA---T---TGATTTCGCTTTCGAGATTGGTGGGAAACTCGAAAC 491
Query 436 GACGTCGCTTTTTGCTGAAGAGCTTTTTGATGGAGGCAAAATAAAACCCTTGAAGCCTCC 495
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 492 GACGTCGCTTTTTGCTGAAGAGCTTTTTGATGGAGGCAAAATCAAACCCTTGAAGCCTCC 551
Query 496 TCCGTATTTACAATTAGACCATCACCATCAGCCTCAGGTTTTATCTCCAAGGTCTCCAAG 555
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 552 TCCGTATTTACAATTAGACCATCATCATCAGCCTCAGATTTTATCTCCAAGGTCTCCAAG 611
Query 556 ATCACCTATTGCTCACGGTAAGAACATTATCCGCAAAGCTTTTTCCCCAAGAAAGAAACC 615
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 ATCACCTATTGCTCATGGTAAGAACATTATCCGCAAAGCTTTTTCCCCAAGAAAGAAACC 671
Query 616 GGAAAACGTGGATCCTTTTGAGGTAGCCATGGAGAAAGCTCGGAATGGCGTAGGAGAGGA 675
||| |||||||||||||||||||| |||||||| |||||| |||||||| ||||||||||
Sbjct 672 GGATAACGTGGATCCTTTTGAGGTCGCCATGGATAAAGCTAGGAATGGCTTAGGAGAGGA 731
Query 676 AAGAGGGAGAGGGAGACGTCAAAACTCGGGTCGTAGAGTTGCTCGATCACTTTCTCCTTT 735
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 732 AAGAGGGAGAGGGAGACGTCAAAACTCTGGTCGTAGAGTTGCTCGATCACTTTCGCCTTT 791
Query 736 TCGGGTTTCGGCTTATCCATGGGAAGAACAAGAACA-G-----GAACA-GA---GAGAG- 784
|||||||||||||||||||||||||||||||||||| | ||||| || |||||
Sbjct 792 TCGGGTTTCGGCTTATCCATGGGAAGAACAAGAACAAGAACAAGAACAAGAACAGAGAGA 851
Query 785 -GTACAAGAACAGAGGAAAGGGACCTTGTCTTCTATTCCATCTACATCTTCATCAACTTG 843
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 852 TGTACAAGAACAGAGGAAAGGGACCTTGTCTTCTATTCCATCTACATCTTCATCAGCTTG 911
Query 844 CGTGTCTTGCAAGTCATCTTCCTCAAAGAAATGGAGGCTAAAGGACTTTCTTCTGTTTCG 903
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 912 CGTGTCTTGCAAGTCATCTTCCTCAAAGAAATGGAGACTAAAGGACTTTCTTCTGTTCCG 971
Query 904 AAGCGCGTCAGAAGGAAGAGCAAGGCACAACAAAGATTCTGTAAAGACGTTTTCAAGTTT 963
||| || || ||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 972 AAGTGCATCCGAAGGAAGAGCAAGGCACAACAAAGATTCGGTAAAGACGTTTACAAGTTT 1031
Query 964 GTTTAGGAAGCAAGAAGACACCAAGAACTCGAGTTCGCGAGGAAGAGGGTCATCATCTGT 1023
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1032 GTTTAGGAAGCAAGAAGACACCAAGAACTCGAGTTCACGAGGAAGAGGGTCATCATCGGT 1091
Query 1024 CTCCGCCCATGAATTCCATTACATGGCTAAGAAAGCAGAAACTAAAGATTTGAAGAAGAA 1083
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1092 CTCCGCCCATGAATTCCATTACATGTCTAAGAAAGCAGAAACGAAAGATTTGAAGAAGAA 1151
Query 1084 GACTTTCTTGCCTTACATGCAAATAGGACGATTCGCCTTCTAATTTCA-TTCTTCAAAAG 1142
||||||||||||||||||||||||||||||||||||||||||| || | |||||| ||||
Sbjct 1152 GACTTTCTTGCCTTACATGCAAATAGGACGATTCGCCTTCTAAATT-AGTTCTTCCAAAG 1210
Query 1143 CCAAAAGTAAAAAGATTTATTTGTTTGTTCCATTATGTTATCTGAAGGACCAAGTCTCTT 1202
||| |||||||||||||||||||||||||| |||||||| | ||||||||||||||||||
Sbjct 1211 CCAGAAGTAAAAAGATTTATTTGTTTGTTCAATTATGTTCTATGAAGGACCAAGTCTCTT 1270
Query 1203 CTTCTCTCTTGTGTGGTTGATTTGTGTTGGGAAGCTTGTAAAAATTAACGTTTTTTGTGC 1262
|||||||||||||||||||||||||| | |||| ||||| |||||||| | |||||| |
Sbjct 1271 CTTCTCTCTTGTGTGGTTGATTTGTGCTCAGAAGTTTGTAGAAATTAACATCTTTTGTAC 1330
Query 1263 ACATTACTTTTGCGACT-CACAATATGTGACTGTCCATCTTTTACATTTACACACAAAAT 1321
|||||| |||||| | | | || ||||||||||||||||||||||||||||||| ||||
Sbjct 1331 ACATTAGTTTTGCTA-TACGCATTATGTGACTGTCCATCTTTTACATTTACACAAAAAAC 1389
Query 1322 AAA 1324
|||
Sbjct 1390 AAA 1392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66164318310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5