BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481515
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26550.1 | Symbols: HO2 | heme oxygenase 2 | chr2:11291218-1... 826 0.0
> AT2G26550.1 | Symbols: HO2 | heme oxygenase 2 | chr2:11291218-11293445
REVERSE LENGTH=1379
Length=1379
Score = 826 bits (447), Expect = 0.0
Identities = 620/697 (89%), Gaps = 38/697 (5%)
Strand=Plus/Plus
Query 8 CTTCTCTTCTCAGGCCAACTCCATTACTCTCTACACCTCATAA----A-TTA-TCTCATC 61
||||||||||||||||||||||||||||||||||||||| ||| | | | |||||||
Sbjct 24 CTTCTCTTCTCAGGCCAACTCCATTACTCTCTACACCTCGTAAGCTCACTCACTCTCATC 83
Query 62 TTCACACCTCTCTCTCTTTCCCA-TCCGAAATTTCGACTCAGAGAAACCCACATAATCAT 120
||||||| ||| ||||||||||| ||| |||| || ||||||||||| ||||| || |||
Sbjct 84 TTCACACATCTATCTCTTTCCCATTCC-AAATCTCAACTCAGAGAAAGCCACAAAAGCAT 142
Query 121 CTTCTCAATCTATGTCGTTCGTCATCAACGCCGTCACAGCAAAAGACCTCACAGAGGAAG 180
||||||||||||||||||||| || |||| |||||||| |||||| ||||||||||||||
Sbjct 143 CTTCTCAATCTATGTCGTTCGACACCAACACCGTCACAACAAAAGGCCTCACAGAGGAAG 202
Query 181 AGAACAAGGTACAGGAAACAGTACCCAGGAGAAAACATTGGTATAACTGAGGAAATGAGA 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 203 AGAACAAGGTACAGGAAACAATACCCAGGAGAAAACATTGGTATAACTGAGGAAATGAGA 262
Query 241 TTCGTCGCCATGAGATTACGCAATGTTAATGG--aaaaa--a-a-----CTG--GAT--- 285
|||||||||||||||||||||||||||||||| ||||| | | ||| |||
Sbjct 263 TTCGTCGCCATGAGATTACGCAATGTTAATGGTAAAAAATTAGATCTTTCTGAAGATAAA 322
Query 286 -CT--TTCTG-G--TG-ATAA-AA-CTGAACaagaaga--a-ga--a-gaagatgaagta 330
|| | | | | | || || ||| ||||||| | || | || |||||||||
Sbjct 323 ACTGACACCGAGAAGGAAGAAGAAGAAGAAGAAGAAGACGATGATGATGATGATGAAGTA 382
Query 331 aaggaagagaCTTGGAAACCGAGCAAAGAAGGGTTTCTTAAGTACTTAGTTGATAGCAAG 390
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 383 AAGGAAGAGACTTGGAAGCCTAGCAAAGAAGGGTTTCTTAAGTACTTAGTTGATAGCAAG 442
Query 391 CTTGTCTTCGATACCATTGAACGAATTGTCGACGAATCTGAGAATGTTTCTTATGCTTAC 450
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 443 CTTGTCTTCGATACTATTGAACGAATTGTTGACGAATCTGAGAATGTGTCTTATGCTTAC 502
Query 451 TTCAGGAGAACAGGATTAGAGAGATGTGAAAGTCTTGAGAAGGATTTACAATGGTTTAGA 510
|| |||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||
Sbjct 503 TTTAGGAGAACAGGATTAGAGAGATGTGAAAGTATTGAGAAGGATCTACAATGGTTAAGA 562
Query 511 GGACAAGATTTGGTTATACCAGAACCAAGTAATATAGGAGTTTCTTATGCGAAGTATTTG 570
| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 563 GAACAAGATTTGGTTATACCAGAACCAAGTAATGTAGGAGTTTCTTATGCAAAGTATTTG 622
Query 571 GAAGAACAAGCAGGGGAAAGTGCACCTTTGTTTCTTTCTCATTTCTACAGTATCTACTTT 630
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 623 GAAGAACAAGCAGGAGAAAGTGCTCCTTTGTTTCTTTCTCATTTCTACAGTATCTACTTT 682
Query 631 TCACATATTGCTGGTGGTCAAGTTATTGTAAGACAGG 667
|||||||||||||||||||||||| ||||||||||||
Sbjct 683 TCACATATTGCTGGTGGTCAAGTTCTTGTAAGACAGG 719
Score = 327 bits (177), Expect = 1e-88
Identities = 193/201 (96%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 919 GTATCTGAGAAGCTTCTGGAAGGAAAGGAGCTGGATTTCAATAGGTGGGAAGGGGATGCA 978
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 884 GTATCTGAGAAACTTCTGGAAGGAAAGGAGCTGGAGTTCAATAGGTGGGAAGGGGATGCA 943
Query 979 CAAGACTTGCTTAAAGGCGTCCGTGAGAAGCTTAACGTTCTCGGAGAGCACTGGACTCGG 1038
|||||||||||||||||||||||||||||||||||||| || || |||||||||| ||||
Sbjct 944 CAAGACTTGCTTAAAGGCGTCCGTGAGAAGCTTAACGTGCTTGGGGAGCACTGGAGTCGG 1003
Query 1039 GACGAGAAGAACAAATGCTTGAAGGAAACAGCAAAGGCGTTTAAGTATATGGGGCAGATA 1098
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1004 GACGAGAAGAACAAATGCTTGAAGGAAACGGCAAAGGCATTTAAGTATATGGGGCAGATA 1063
Query 1099 GTTCGCTTGATCATCTTGTAA 1119
|||||||||||||||||||||
Sbjct 1064 GTTCGCTTGATCATCTTGTAA 1084
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54869195685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5