BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481516
Length=1438
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26560.1 | Symbols: PLP2, PLA IIA, PLA2A | phospholipase A 2... 2248 0.0
> AT2G26560.1 | Symbols: PLP2, PLA IIA, PLA2A | phospholipase A
2A | chr2:11293769-11295806 REVERSE LENGTH=1465
Length=1465
Score = 2248 bits (1217), Expect = 0.0
Identities = 1383/1458 (95%), Gaps = 32/1458 (2%)
Strand=Plus/Plus
Query 1 AATATCTCATAATCAAAGTTCTATCTCCTCAAGTATCAATACATAGATATCCATTAACaa 60
||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1 AATATCTCACAATCAAAGTTCTATCTCCTCAAGTATCAATACATTGATATCCATT----A 56
Query 61 aaaaaaaCAAAAGTATCAATACATAATTACTTTGCTTATTTC-GTAAGATGCAAATGGAC 119
||||||| ||| ||||||||| ||| |||||||| ||| |||||||||||||||||
Sbjct 57 AAAAAAA-GAAA-TATCAATAC---ATTGCTTTGCTT-GTTCTGTAAGATGCAAATGGAC 110
Query 120 AGCCCCAAATCTCCTCTCCAGCCCCCGACCTATGGAAACTTAGTTACAATCCTCAGCATC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 AGCCCCAAATCTCCTCTCCAGCCCCCGACCTATGGAAACTTAGTTACAATCCTCAGCATC 170
Query 180 GACGGTGGTGGCATTAGAGGGCTAATCCCTGCCGTTATCCTTGGTTTTCTCGAGTCCGAA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 GACGGTGGTGGCATTAGAGGGCTAATCCCTGCCGTTATCCTTGGTTTTCTCGAGTCCGAA 230
Query 240 CTTCAGAAATTGGATGGAGAAGAAGCAAGGCTTGCAGACTACTTTGATGTAATGGCGGGA 299
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 231 CTCCAGAAATTGGATGGAGAAGAAGCAAGGCTTGCAGACTACTTTGATGTAATAGCGGGA 290
Query 300 ACAAGCACTGGTGGTCTGGTGACAGCCATGCTCACCGCGCCTAATAAGGAAGGCCGACCC 359
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 ACAAGCACCGGTGGTCTAGTGACAGCCATGCTCACCGCGCCTAATAAGGAAGGCCGACCC 350
Query 360 TTGTTTGCAGCCTCTGAGATTAAAGATTTCTATCTTGAGCAATGTCCAAAGATCTTCCCT 419
|| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 351 TTATTTGCAGCGTCTGAAATTAAAGATTTCTATCTTGAGCAATGTCCGAAGATCTTCCCT 410
Query 420 CAAGATCATTTCCCATTCTCGGCCGCCAAAAACCTTGTGAAGTCCTTGACTGGTCCGAAA 479
|||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||
Sbjct 411 CAAGATCATTTCCCATTCTCAGCCGCCAAAAAACTCGTGAAGTCCTTGACTGGTCCTAAA 470
Query 480 TATGACGGTAAATACCTTCATCAGCTTATCCACGCTAAGTTGGGTGATACAAAGTTGAGT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TATGACGGTAAATACCTTCATCAGCTTATCCACGCTAAGTTGGGTGATACAAAGTTGAGT 530
Query 540 CAAACACTTACCAACGTTGTCATTCCAACGTTCGATATCAAGTATCTTCAACCTACTATC 599
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 531 CAAACACTTACCAACGTTGTCATTCCAACGTTCGATATCAAGCATCTTCAACCTACTATC 590
Query 600 TTTAGTAGTTACGAGGTAAAAAATCATCCTCTCAAGAACGCAACCCTCGCTGACATTGCC 659
||||||||||| ||||||||||| |||||||||||| ||||||||||||| |||||||||
Sbjct 591 TTTAGTAGTTATGAGGTAAAAAACCATCCTCTCAAGGACGCAACCCTCGCAGACATTGCC 650
Query 660 ATCTCAACTTCAGCTGCCCCTACATACTTGCCTGCCCATTTCTTCAAAGTTGAAGATTCA 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 651 ATCTCAACTTCAGCTGCCCCTACATACTTGCCTGCCCATTTCTTCAAAGTTGAAGATTTA 710
Query 720 ACCGGAAACGTTAAAGAATACAATCTTATTGATGGTGGAGTTGCAGCTAACAACCCGGCT 779
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 AACGGAAACGCTAAAGAATACAATCTTATTGATGGTGGAGTTGCAGCTAACAACCCGGCT 770
Query 780 TTGCTGGCCATTGGGGAGGTAACGAATGAGATCACAAGG-GGAAGCAGTGATTTTTTCCC 838
||| ||||||||||||| ||||| ||||||||| | ||| ||||||||||| ||||||||
Sbjct 771 TTGTTGGCCATTGGGGAAGTAACAAATGAGATCTC-AGGAGGAAGCAGTGACTTTTTCCC 829
Query 839 AATAAGACCAAATGATTACGGAAGGTTTCTTGTGCTTTCGCTTGGAACCGGAAATCATAA 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 AATAAGACCAAATGATTACGGAAGGTTTCTTGTGCTTTCGCTTGGAACCGGAAATCATAA 889
Query 899 AGCCGAAGAAAAATTCAATGCTAAAGAAGTAGCTGGTTGGGGATTGTTGAGTTGGTTAAC 958
||||||||| ||||||||||| ||||||||||||||||||||| | |||| |||||||||
Sbjct 890 AGCCGAAGAGAAATTCAATGCAAAAGAAGTAGCTGGTTGGGGACTATTGAATTGGTTAAC 949
Query 959 ACACGACAACTCTACACCTATCATTGATGCTTTCTCGCAAGCTAGCTCCGACATGGTTGA 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 ACACGACAACTCTACACCTATCATTGATGCTTTCTCGCAAGCTAGCTCCGACATGGTTGA 1009
Query 1019 TTTCCATCTCTCTGCCGTTTTTCGAGCTCTTCATTCCGAAGCCAACTATATTCGCATCCA 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 TTTCCATCTCTCTGCCGTTTTTCGAGCTCTTCATTCCGAAGCCAACTATATTCGCATCCA 1069
Query 1079 GGATGACACATTAACTGGGGATGCTGCTTCTGTTGATATCGCTACCG-CGGAGAATCTTG 1137
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
Sbjct 1070 GGATGACACATTAACTGGGGATGCTGCTTCTGTTGATATCGCTACCGTCG-AGAATCTGG 1128
Query 1138 ACATTCTCGCCAAGATAGGAGATGAACTACTCAAAAAACCTGTTGCAAGAGTCAACCTAG 1197
||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1129 ACATTCTTGCCAAGACAGGAGATGAACTACTTAAAAAACCTGTTGCAAGAGTCAACCTAG 1188
Query 1198 ACTCGGGTTGTAACGAAAATGCTTATAAAACGACTAATGAACATGCTCTTATAAAGTTAG 1257
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1189 ACTCGGGTTGTAACGAAAATGCTTATGAAACGACTAATGAACATGCTCTTATAAAGTTAG 1248
Query 1258 CAGGAATACTTTCAAAAGAAAAGAAGATCCGAGACATGCGATCACCTCATGCAAAAGCTC 1317
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1249 CAGGAATACTTTCAAAAGAAAAGAAGATCCGAGACATTCGTTCACCTCATGCAAAAGCTC 1308
Query 1318 CAATTAGGATCTAAA----T-A------G-ATC----A-ATTGTTGATGATTCGTTTGTT 1360
||||||||||||||| | | | ||| | |||||||||||||||||||||
Sbjct 1309 CAATTAGGATCTAAAGAGATCAATTATTGTATCTTGTATATTGTTGATGATTCGTTTGTT 1368
Query 1361 TTACTAATGCACGTTTGGATTTATATTAATAAAAAGGTTGCACCACATTGTGGTCACTTG 1420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 TCACTAATGCACGTTTGGATTTATATTAATAAAAAGGTTGCACCACATTGTGGTCACTTG 1428
Query 1421 TACGTTTGAATAAAGTCA 1438
||||||||||||||||||
Sbjct 1429 TACGTTTGAATAAAGTCA 1446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70883169540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5