BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481524
Length=764
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26580.1 | Symbols: YAB5 | plant-specific transcription fact... 750 0.0
> AT2G26580.1 | Symbols: YAB5 | plant-specific transcription factor
YABBY family protein | chr2:11303590-11306850 REVERSE LENGTH=831
Length=831
Score = 750 bits (406), Expect = 0.0
Identities = 526/581 (91%), Gaps = 19/581 (3%)
Strand=Plus/Plus
Query 73 AGATCGATCATGGCTAACTCTGCGATGGCAACCGAGCAACTTTGCTACATCCCTTGCAAC 132
|||||||||||||||||||||| |||||||||||| || || ||||||||||||||||||
Sbjct 103 AGATCGATCATGGCTAACTCTGTGATGGCAACCGAACAGCTCTGCTACATCCCTTGCAAC 162
Query 133 TTTTGCAACATAATTCTCGCGGTGAGTGTCCCATGCAGCAGCTTGTTCGACATCGTGACC 192
||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||
Sbjct 163 TTTTGCAACATAATTCTTGCGGTGAATGTCCCATGCAGCAGCCTGTTCGACATCGTGACC 222
Query 193 ATCCGATGCGGTCACTGCACCAATCTGTGGTCTGTAAACATGGCAGCTGCTCTTCAGTCA 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GTCCGATGCGGTCACTGCACCAATCTGTGGTCTGTAAACATGGCAGCTGCTCTTCAGTCG 282
Query 253 CTTTCACGCCCTAATTTCCATGCAACGAACAATGCAGTACCAGAGTATGGATCTTCCTCA 312
|||||||||||||||||||| ||||| ||| |||||||||||||||||||||| ||||||
Sbjct 283 CTTTCACGCCCTAATTTCCAGGCAACAAACTATGCAGTACCAGAGTATGGATCCTCCTCA 342
Query 313 AG-AGACCACACCAAAATACCTTCAAGAATTTCAACTCGTACCATAACTGAGCAAAGGAT 371
|| || |||||| ||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 343 AGAAG-CCACACAAAAATCCCTTCAAGAATTTCAACTCGTACCATAACTGAGCAACGGAT 401
Query 372 AGTAAACCGTCGTAAGATTGCTTCGGAGAAGCGGCAGCGAGTACCTTCTGCGTACAACCA 431
|||||||||| | | |||||||||||||||||||||||||||||||||| ||
Sbjct 402 TGTAAACCGTCCT-------C--CGGAGAAGCGGCAGCGAGTACCTTCTGCGTACAATCA 452
Query 432 ATTCATAAAAGAGGAAATTCAAAGGATTAAGGCGAATAATCCAGACATAAGCCACAGAGA 491
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 453 ATTCATAAAAGAGGAAATTCAGAGGATTAAGGCGAATAATCCAGACATAAGCCACAGAGA 512
Query 492 AGCATTCAGCACCGCTGCCAAGAATTGGGCACACTTTCCTCATATTCACTTCGGCCTCAT 551
|||||||||||| |||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 513 AGCATTCAGCACTGCTGCCAAGAATTGGGCACACTTTCCTCATATTCACTTTGGTCTAAT 572
Query 552 GCTGGAGAGCAACAAGCAAGCTAAGCTAGCTTGATAATG-TAAGTGCTCTCTTC-TA-TA 608
||||||||| ||||||||||||||| |||| | ||||| | | | | | | || ||
Sbjct 573 GCTGGAGAGTAACAAGCAAGCTAAGATAGCCTAATAATTCTC-GAGAT-TAATGGTAATA 630
Query 609 -ACAGGTGTTGGAGACTTTGAAGTAACAAGAGCTGAGAAGG 648
| || |||||||||||| ||||||||||||||||||||||
Sbjct 631 TA-AG-TGTTGGAGACTTCGAAGTAACAAGAGCTGAGAAGG 669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37123034633
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5