BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481526
Length=1703
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26600.1 | Symbols: | Glycosyl hydrolase superfamily protei... 2348 0.0
> AT2G26600.1 | Symbols: | Glycosyl hydrolase superfamily protein
| chr2:11316412-11318483 FORWARD LENGTH=1750
Length=1750
Score = 2348 bits (1271), Expect = 0.0
Identities = 1569/1706 (92%), Gaps = 47/1706 (3%)
Strand=Plus/Plus
Query 31 AAACCCAGAAGaaaaaaaaaaaTATCTCTCTTGAAAATTCTCCTTTTGCAAAAATCATTC 90
||||||||||| || ||||||| ||||| ||||||||||||||||||| |||||||||
Sbjct 59 AAACCCAGAAG--AACAAAAAATCTCTCTTTTGAAAATTCTCCTTTTGC--AAATCATTC 114
Query 91 -AGTGAAGCAGAATCA------TCTTCTTCTCCAGCTTCATCAA-----TCT---C--TT 133
||||||||| ||||| |||||||||||||||||||||| ||| | ||
Sbjct 115 AAGTGAAGCACAATCATCTTCTTCTTCTTCTCCAGCTTCATCAATCTCTTCTAGACTTTT 174
Query 134 T--G-TTA-CTGAAAAAATTGTTTTGATCGGAAGGATCTGA-TGTCTTCGATGTCGCTGT 188
| | ||| ||| ||||| ||||||||||| ||| |||||| || |||||||||||||||
Sbjct 175 TGCGTTTACCTG-AAAAACTGTTTTGATCGTAAGTATCTGATTG-CTTCGATGTCGCTGT 232
Query 189 CGAATCAGATTCCCGTTTGCTCTCGATGA-CCTCTGCATCTTCTTCCACttttttt-C-C 245
|||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||| | |
Sbjct 233 CGAATCAGATTCCCGTTTACTCTCGATGACCCTTTGCTTCTTCTTCCACTTTTTTTCCAC 292
Query 246 AGTTTTCTGATAACTTTTCTCAGATGAGAAGTTCCAAGTTACTTCTTCTCAAGTTCTTCT 305
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 293 AGTTTTCTGATAACTCTTCTCAGATGAGAAGTTCTAAGTTACTTCTTCTCAAGTTCTTCT 352
Query 306 TCGTCTTCTTCAttttttttttCTGT-G-TAGAGTTTCAAGTGGATGGAGCATTTGTTGG 363
|| |||||||| || | | || | | | |||| |||||| |||||||||||||||||
Sbjct 353 TCTTCTTCTTC-TTCAATCTGACT-TCGCTTGAGTATCAAGTTGATGGAGCATTTGTTGG 410
Query 364 AACCTATGGGATAAATTATGGAAGGATTGCGGATAACATACCGTCTCCGGATAAAGTAGT 423
||| ||||||||||||||||||||||| || || |||||||| |||||||| ||||||||
Sbjct 411 AACATATGGGATAAATTATGGAAGGATAGCTGACAACATACCATCTCCGGAGAAAGTAGT 470
Query 424 TTTACTTCTAAAGCAAGCTAAAATTCGAAATGTGCGTATATACGATGCAGATCACACTGT 483
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 471 TTTACTTCTAAAGCAAGCTAAAATTCGGAATGTGCGTATATACGATGTAGATCACACTGT 530
Query 484 CCTTGAAGCTTTTAGTGGAACTGGTTTAGACCTTGTGGTTGGACTTCCAAATGGGTTTTT 543
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 531 TCTTGAAGCTTTTAGTGGAACTGGTTTAGACCTTGTTGTTGGACTTCCTAATGGGTTTTT 590
Query 544 AAAAGAGATGAGTTCGAATGCTGATCATGCTTTCTCTTGGGTTAAAGAAAATGTTCAGTC 603
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 591 AAAAGAGATGAGTTCAAATGCTGATCATGCTTTCTCTTGGGTTAAAGAAAATATTCAGTC 650
Query 604 TTTCTTACCCAAGACTCGGATTCGTGGTATCGCGATTGGGAATGAAGTTCTTGGAGGCGG 663
|||||||||||||||||||||||| |||||||| || || || |||||||||||||||||
Sbjct 651 TTTCTTACCCAAGACTCGGATTCGCGGTATCGCTATAGGTAACGAAGTTCTTGGAGGCGG 710
Query 664 TGATTCTGAGCTCGCGGGAGCTTTACTTGGTGCAGCGAAAAATGTGTACAATGCGTTGAA 723
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 711 TGATTCTGAGCTCGCGGGAGCTTTACTTGGTGCTGCTAAAAATGTGTACAATGCGTTGAA 770
Query 724 GAAAATGAATCTGGAGGACACGGTGCAGATCACCACGGCTCATTCACAGGCTGTGTTTTC 783
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 771 GAAAATGAATCTGGAGGACACTGTGCAGATCACTACGGCTCATTCACAGGCTGTGTTTTC 830
Query 784 TGATTCATACCCGCCATCGTCTTGTGTGTTTAAGGAGAATGTTGTTCAGTTCATGAAGCC 843
|||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 831 TGATTCCTACCCGCCTTCGTCTTGTGTGTTTAAAGAGAATGTTGTTCAGTTCATGAAGCC 890
Query 844 ACTGTTGGAGTTTTTTCAGCAGATTGGCTCTCCTTTTTGTTTGAACGCGTACCCTTTTTT 903
| ||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 891 ATTGTTGGAGTTTTTTCAGCAGATTGGGTCTCCTTTTTGTTTGAATGCTTACCCTTTTTT 950
Query 904 GGCGTATACTTATAATCCGAAGGAGATTGATATCAACTATGCTCTTTTCAAGCCAACAGA 963
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 951 GGCGTACACTTATAATCCGAAGGAGATTGATATCAACTATGCTCTTTTCAAGCCAACGGA 1010
Query 964 AGGCATATATGACCCGAAAACTGATCTACATTATGATAACATGCTTGATGCTCAGATCGA 1023
||| ||||||||||||||||| ||| | ||||| ||||||||||||||||||||||| ||
Sbjct 1011 AGGGATATATGACCCGAAAACCGATTTGCATTACGATAACATGCTTGATGCTCAGATTGA 1070
Query 1024 TGCTGCCTACATGGCCCTGCAAGATGCTGGGTTCAAGAAGATGGAGGTTATGATCACTGA 1083
|||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1071 TGCTGCTTACATGGCGTTGCAAGATGCTGGGTTTAAGAAGATGGAGGTTATGATCACTGA 1130
Query 1084 AACTGGGTGGGCTTCTAAAGGGGATTCAGATGAACCTGCAGCAACACCGGAGAACGCAAG 1143
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1131 AACTGGGTGGGCTTCTAAAGGGGATTCAGATGAACCTGCAGCAACACCAGAGAACGCAAG 1190
Query 1144 AACCTATAACTATAACCTCAGGAAGAGGCTTGCAAAGAAGAAAGGGACACCTCTTAGACC 1203
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1191 AACGTATAACTATAACCTCAGGAAGAGGCTTGCTAAGAAGAAAGGGACACCTCTTAGACC 1250
Query 1204 AAAAACGGTGCTCAAAGCCTATATCTTTGCATTGTTCAATGAAAACTCAAAACCGGGCAA 1263
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 AAAAACGGTGCTTAAAGCCTATATCTTTGCATTGTTCAATGAAAACTCAAAACCGGGCAA 1310
Query 1264 GAGTTCTGAGACACACTTTGGACTTTTTAAACCGGATGGAACCATATCATATGACATTGG 1323
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1311 GAGTTCTGAGACACACTTTGGACTTTTTAAACCTGATGGAACCATATCATATGACATTGG 1370
Query 1324 ATTCAATAGTCTGAAGTCTGATGCTCCCAAGTCACTCATTTCATCATCAAAGGCGGCTCG 1383
|||||| | ||| ||||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct 1371 ATTCAACAATCTAAAGTCTGATTCTCCCAAGTCACTCATTTCATCATCAAAGTCAGCTCG 1430
Query 1384 TTACTATGTG--AT----CATCTCTGTCTCGGTTTTCCTCTTGATGATATAAATGCGGAA 1437
|||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1431 TTACTATGTGGCATTGGTCATCTCTGTCTCGGCTTTCCTCTTGATGATATAAATGCGGAA 1490
Query 1438 ATGGTGTGAGCTTTGACGATAGGATCCTCGGATTTGGTCATACATTCGTAGCAATATAAT 1497
|||||||||||||||||||| ||| |||||||||| ||||||||||||| ||||||
Sbjct 1491 ATGGTGTGAGCTTTGACGAT-----CCTTGGATTTGGTCGTACATTCGTAGCACTATAAT 1545
Query 1498 ATATTAATACTAGGGTTGAGAGGCTAACGAAATGGTAGGGGCACAAATTTACTGCAATTC 1557
|||| | ||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 1546 ATAT-ATTACTAGGGTTGGGACGCTAACGAAATGGTAGGAGCACAAATTTACTGCAATTC 1604
Query 1558 TCATACATGTAGCCAAGAGATATCCAGGAAAGATATCACCAGACACTCTCATATATACAC 1617
||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1605 TCATATATGTAGCCAAGAGATATCCAGAAAAGATATCACCAGACACTATCATATATACAC 1664
Query 1618 ATCTTATGTAAAACAAATCTAATACATAAATTTGGGTCTCTGCTTAGAtttttttGAATT 1677
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||
Sbjct 1665 ATCTTATGTAAAACAAATCTAATACATAAATTTGGGTCTCTGCTTATATTTTGTTGGATT 1724
Query 1678 GGATACTTGGGAAATTAATGGATATC 1703
||||||| |||||||||| |||||||
Sbjct 1725 GGATACTGGGGAAATTAACGGATATC 1750
Score = 54.7 bits (29), Expect = 3e-06
Identities = 37/40 (93%), Gaps = 3/40 (8%)
Strand=Plus/Plus
Query 1 TTATTCATATATTCGACAGTGACGAAAA-A-GAAAC-CCA 37
|||||||||||||||||||||||||||| | ||||| |||
Sbjct 1 TTATTCATATATTCGACAGTGACGAAAACAAGAAACTCCA 40
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84186313965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5