BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481532
Length=1112
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26670.1 | Symbols: HY1, ATHO1, HO1, TED4, GUN2, HY6 | Plant... 1574 0.0
AT1G69720.1 | Symbols: HO3 | heme oxygenase 3 | chr1:26226866-2... 634 0.0
AT1G58300.1 | Symbols: HO4 | heme oxygenase 4 | chr1:21628012-2... 494 9e-139
> AT2G26670.1 | Symbols: HY1, ATHO1, HO1, TED4, GUN2, HY6 | Plant
haem oxygenase (decyclizing) family protein | chr2:11341684-11343572
FORWARD LENGTH=1159
Length=1159
Score = 1574 bits (852), Expect = 0.0
Identities = 1040/1127 (92%), Gaps = 27/1127 (2%)
Strand=Plus/Plus
Query 1 CCTATTTAAAAATTCAATTGGAATTGTG-AGTCCCTCTTCTCTATTCCTTCAAGGCAACT 59
||||||||||||||||||| |||| ||| | ||||||||||||||||||||||| |||||
Sbjct 21 CCTATTTAAAAATTCAATTAGAATAGTGTA-TCCCTCTTCTCTATTCCTTCAAGCCAACT 79
Query 60 AAAACTACATTGC--G--------TG--A-C----TTC--TTCCGATCAAA-TATGGCTT 99
||||||||||||| | || | | ||| ||||||||||| ||||| |
Sbjct 80 AAAACTACATTGCGTGACTTCTTCTGTAACCATTTTTCTATTCCGATCAAACCATGGCGT 139
Query 100 ATTTAGCTCCGATTTCGTCATCCTTATCCATATTCAAGAATCCCCAACTCTCAAGATTCC 159
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 ATTTAGCTCCGATTTCTTCATCCTTATCCATATTCAAGAATCCCCAACTCTCAAGATTCC 199
Query 160 AATTTTCTTATTCCCCACCAAACCCATTTTTCCTTCGACCTAGGATTCAGATTCTGAGTA 219
||||||||| |||| |||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 200 AATTTTCTTCTTCCTCACCGAACCCACTTTTCCTTCGACCTAGGATTCAGATTCTGAGTA 259
Query 220 TG-CCGATGAGCAAGACGCCGTCTTTAGTGGTGGTTGCGGCCACTACAGCGGCGGAGAAG 278
|| || |||| |||| ||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 260 TGACC-ATGAACAAGTCGCCGTCTTTAGTGGTGGTTGCGGCTACTACTGCGGCAGAGAAG 318
Query 279 CAGAAGAAGAGGTATCCTGGAGAATCAAAGGGTTTTGTGGAGGAGATGAGGTTTGTGGCT 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 CAGAAGAAGAGGTATCCTGGAGAATCAAAGGGTTTTGTGGAGGAGATGAGGTTTGTGGCT 378
Query 339 ATGAGACTACATACGAAAGATCAAGCTAAGGAAGGTGAGAAAGAGACTAAATCTATTGAG 398
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 ATGAGACTTCATACTAAAGATCAAGCTAAGGAAGGTGAGAAAGAGACTAAATCTATTGAG 438
Query 399 GAACGTCCCGTGGCTAAATGGGAACCGACTGTTGAAGGTTACTTGAGGTTTCTTGTGGAC 458
|||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 439 GAACGTCCTGTTGCTAAATGGGAACCTACTGTTGAAGGTTACTTGAGGTTTCTTGTGGAT 498
Query 459 AGTAAATTGGTTTATGATACTCTTGAACAGATTATTCAAGATTCCGATTTCCCAACTTAT 518
|||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||
Sbjct 499 AGTAAATTGGTTTATGATACTCTTGAACTGATTATTCAAGACTCCAATTTCCCAACTTAT 558
Query 519 GCCGAATTCAAGAACACGGGGCTGGAAAGGGCGGAGAAATTGGCCACGGATTTGGAGTGG 578
||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 559 GCCGAGTTCAAGAACACGGGGCTGGAAAGAGCGGAGAAATTATCCACGGATTTGGAGTGG 618
Query 579 TTCAAGGAACAAGGCTACGAGATTCCAGAACCAACTGCTCCTGGTAAAACATATTCTCAG 638
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 619 TTCAAGGAACAAGGTTACGAGATTCCAGAACCAACAGCTCCTGGTAAAACATATTCTCAA 678
Query 639 TATTTAAGGGAATTAGCAGAGAAGGATCCTCAAGCATTCATTTGTCACTTCTACAACATC 698
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 TATTTAAAGGAATTAGCAGAGAAGGATCCTCAAGCATTCATTTGTCACTTCTACAACATC 738
Query 699 TACTTCGCCCATAGTGCTGGTGGACGAATGATTGGCAGAAAGGTAGCTGAGAGAATACTT 758
||||| || ||||||||||||||||||||||||||||||||||| || ||| | |||||
Sbjct 739 TACTTTGCTCATAGTGCTGGTGGACGAATGATTGGCAGAAAGGTGGCAGAGCGGATACTC 798
Query 759 GACAATAGAGAACTCGAGTTCTACAAATGGGACGGCGAACTATCCCAATTGTTGCAGAAC 818
|| |||| ||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 799 GATAATAAAGAACTCGAGTTCTACAAATGGGACGGCGAACTTTCTCAATTGTTGCAGAAC 858
Query 819 GTTAGGGAGAAACTGAACAAAGTTGCCGAGGAGTGGACGAGAGAAGAAAAGAATCATTGT 878
|||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 859 GTTAGGGAGAAACTGAACAAGGTTGCAGAGGAGTGGACTAGAGAAGAAAAGAATCATTGT 918
Query 879 TTGGAAGAGACGGAGAAATCGTTCAAGTATTCTGGTGAAATACTTCGTCTGATATTGTCC 938
||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 919 TTGGAAGAGACTGAGAAATCGTTCAAGTATTCTGGTGAGATACTTCGTCTCATATTGTCC 978
Query 939 TGATTTGAAT-CGCAGTGTCTCTAGATATCTCAATACGGCTTGTGGCAACTAAAATCCTG 997
||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 979 TGATTTGG-TGCGCAGTGTCTCTAGATATCTCAATACGTCTTGTGGCAACTAAAATGATG 1037
Query 998 CACATTGTTTATATTCCTGCATTATATTCATCATCTTCTACTTCTTGTTAAACTCTTCTT 1057
||||||||||||||||||| |||||||| |||||||||||| | | |||||||||||||
Sbjct 1038 CACATTGTTTATATTCCTGTATTATATTAATCATCTTCTACATGTA-TTAAACTCTTCTT 1096
Query 1058 TGCTTCAAAGCTATTACTAAGTTCATGGTTCAAATTAATAACTTTTC 1104
|||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1097 TGCTTCAAAGCTGTTACTAAGTTCAAGGTTCAAATTAATAACTTTTC 1143
> AT1G69720.1 | Symbols: HO3 | heme oxygenase 3 | chr1:26226866-26228580
FORWARD LENGTH=1115
Length=1115
Score = 634 bits (343), Expect = 0.0
Identities = 576/687 (84%), Gaps = 22/687 (3%)
Strand=Plus/Plus
Query 271 CGGAGAAGC-AGAAGAAGAGGTATCCTGGAGAATCAAAGGGTTTTGTGGAGGAGATGAGG 329
||||||||| | || |||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 284 CGGAGAAGCAACAA-AAGAAGTATCCAGGAGAATCAAAGGGTTTTGTGGAGGAGATGAGA 342
Query 330 TTTGTGGCTATGAGACTACATACGAAAGATCAAGCTAA-GGAAGGTGAGAAAGAGA-CTA 387
|| ||||| |||||| | ||||||||||||||||| || |||||| || ||||| | |||
Sbjct 343 TTCGTGGCGATGAGATTGCATACGAAAGATCAAGC-AAGGGAAGGAGAAAAAGA-ATCTA 400
Query 388 AATCTATTGAGGAACGTCCCGTGGCTAAATGGGAACCGACTGTTGAAGGTTACTTGA-GG 446
|||| |||||| |||| ||||| |||||||| |||||||| ||||| ||||| |
Sbjct 401 GATCTCCAGAGGAAGGTCCGGTGGCGAAATGGGAGCCGACTGTGGAAGGATACTT-ACAT 459
Query 447 TTTCTTGTGGACAGTAAATTGGTTTATGATACTCTTGAACAGATTATTCA-AGATTCCGA 505
||||||||||| ||||| |||||||| || || |||||| ||| ||| | || ||| |
Sbjct 460 TTTCTTGTGGATAGTAAGTTGGTTTACGACACGCTTGAAGGGATCATTGATGGA-TCCAA 518
Query 506 TTTCCCAACTTATGCCGAATTCAAGAACACGGGGCTGGAAAGGGCGGAGAAATTGGC-CA 564
||||||||||||||| | |||||||||||||| | ||||| || ||| | || || |
Sbjct 519 TTTCCCAACTTATGCTGGTTTCAAGAACACGGGATTAGAAAGAGCAGAG-AGTTTGCGGA 577
Query 565 CGGATTTGGAGTGGTTCAAGGAACAAGGCTACGAGATTCCAGAACCAACT-GCTCCTGGT 623
|||||||||||||||||||||||||| || ||||||||||| |||| | |||||||||
Sbjct 578 AAGATTTGGAGTGGTTCAAGGAACAAGGTTATGAGATTCCAGAGCCAA-TGGCTCCTGGT 636
Query 624 AAAACATATTCTCAGTATTTAAGGGAATTAGCAGAGAAGGATCCTCAAGCATTCATTTGT 683
|||||||||||| ||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 637 AAAACATATTCTGAGTATTTAAAAGATTTAGCAGAGAATGATCCTCAAGCATTCATTTGT 696
Query 684 CACTTCTACAACATCTACTTCGCCCATAGTGCTGGTGGAC-GAATGATTGGCAGAAAGGT 742
|||||||||||||| ||||| || ||||| || ||||| | || ||||||| | ||||||
Sbjct 697 CACTTCTACAACATTTACTTTGCTCATAGCGCCGGTGGCCAGA-TGATTGGAACAAAGGT 755
Query 743 AGCTGAGA-GAATACTTGACAATAGAGAACTCGAGTTCTACAAATGGGACGG-CGAACTA 800
| || ||| || |||| || |||| ||||||||||||||| ||||||||||| | ||||
Sbjct 756 ATCTAAGAAGA-TACTAGATAATAAAGAACTCGAGTTCTATAAATGGGACGGTC-AACTT 813
Query 801 TCCCAATTGTTGCAGAACGTTAGGGAGAAACTGAACAAAGTTGCCGAG-GAGTGGACGAG 859
|| || |||||||| || || ||| | ||||||||||||||||| ||| | |||||| ||
Sbjct 814 TCTCAGTTGTTGCAAAATGTGAGGCAAAAACTGAACAAAGTTGCAGAGTG-GTGGACAAG 872
Query 860 AGAAGAAAAGAATCATTGTTTGGAAGAGACGGAGAAATCGTTCAAGTATTCTGGTGAAAT 919
||||||||||| |||||| ||||||||||| ||||||||||| |||| ||| || || ||
Sbjct 873 AGAAGAAAAGAGTCATTGCTTGGAAGAGACTGAGAAATCGTTTAAGTTTTCAGGGGAGAT 932
Query 920 ACTTCGTCTGATATTGTCCTGATTTGA 946
||||| || |||||||||||||||||
Sbjct 933 TCTTCGACTCATATTGTCCTGATTTGA 959
> AT1G58300.1 | Symbols: HO4 | heme oxygenase 4 | chr1:21628012-21629996
REVERSE LENGTH=855
Length=855
Score = 494 bits (267), Expect = 9e-139
Identities = 445/527 (84%), Gaps = 28/527 (5%)
Strand=Plus/Plus
Query 432 GAAGGTTACTTGAGGTTTCTTGTGGACAGTAA-ATTGGT-TTATGATACTCTTGAACAG- 488
||||| ||||||| |||||| ||||||||||| || || || ||| || ||||||| |
Sbjct 343 GAAGGGTACTTGAAGTTTCTCGTGGACAGTAAGCTT-GTGTT-TGAGACGCTTGAAC-GA 399
Query 489 ATTATTCAA-GATTCCGATTTCCCAA-CTTATGCCGAATTCAAGAACACGGGGCTGGAAA 546
|||||| || || || | | | |||| ||||||||| |||| ||||||||| ||||||
Sbjct 400 ATTATT-AACGAATCTGCTAT-CCAAGCTTATGCCGGGCTCAAAAACACGGGGTTGGAAA 457
Query 547 GGGCGGAGAAATTG-GCCACGGATTTGGAGTGGTTCAAGGAACAAGGCTACGAGATTCCA 605
|||| ||||| ||| | | ||||||||||||||||||||||||||| ||||||||||||
Sbjct 458 GGGCAGAGAATTTGAG-TAGGGATTTGGAGTGGTTCAAGGAACAAGGTTACGAGATTCCA 516
Query 606 GAACCAACT-GCTCCTGGTAAAACATATTCTCAGTATTTAAGGGAAT-TAGCAGAGAAGG 663
|| ||| | | |||||||||| |||||||||||||||||| |||| |||||||||| |
Sbjct 517 GAGTCAA-TGGTTCCTGGTAAAGCATATTCTCAGTATTTAA-AGAATATAGCAGAGAAAG 574
Query 664 ATCCTCAAGCATTCATTTGTCACTTCTACAACATCT-ACTTCGCCCATAGTGCTGGTGGA 722
|||||| ||||||||| ||||||||||||||||| | |||| || ||||| ||||||||
Sbjct 575 ATCCTCCAGCATTCATCTGTCACTTCTACAACAT-TAACTTTGCACATAGCGCTGGTGGT 633
Query 723 CGAATGATTGGCAGAAAGGTAGCTGAG-AGAATACTTGACAATAGAGAACTCGAGTTCTA 781
||||||||||| | ||||||||||||| || ||||| ||||||| |||||||||||||||
Sbjct 634 CGAATGATTGGGACAAAGGTAGCTGAGAAG-ATACTCGACAATAAAGAACTCGAGTTCTA 692
Query 782 CAAATGGGACGGCGAACTATCCCAATTGTTGCAGAACGTTAGGGA-GAAACTGAACAAAG 840
||||||||||||| |||| ||| |||||||||||||||| || || ||| |||||||||
Sbjct 693 CAAATGGGACGGCCAACTTTCCGAATTGTTGCAGAACGTGAGTGAAGAAT-TGAACAAAG 751
Query 841 TTGCCGAGGAGTGGACGAGAGAAGAAAAGAATCATTGTTTGGAAGAGACGGAGAAATCGT 900
| || ||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 752 TGGCTGAGTTGTGGACGAGAGAAGAGAAGAATCATTGTTTGGAAGAGACAGAGAAATCGT 811
Query 901 TCAAGTATTCT-GGTGAAATACTTCGTCTGA-T-ATTGTCCTGATTT 944
|||||| || | || || || ||||| | | | |||||||| ||||
Sbjct 812 TCAAGTTTTATTGG-GAGATTTTTCGT-T-ACTTATTGTCCTAATTT 855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54517791870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5