BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481533
Length=1270
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26680.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Methyltra... 1965 0.0
> AT2G26680.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Methyltransferase
FkbM (InterPro:IPR006342); Has 1073 Blast hits to
1073 proteins in 243 species: Archae - 45; Bacteria - 509;
Metazoa - 0; Fungi - 4; Plants - 60; Viruses - 4; Other Eukaryotes
- 451 (source: NCBI BLink). | chr2:11343801-11345402
REVERSE LENGTH=1276
Length=1276
Score = 1965 bits (1064), Expect = 0.0
Identities = 1206/1275 (95%), Gaps = 7/1275 (1%)
Strand=Plus/Plus
Query 1 CGAATCCAGCTTTTCCCACCCTAGATCTCTCCTTGTTGTTTCCTCAGATCTGCAATTTCA 60
|||||||| |||||||||||| |||||||||||| |||||||| |||||||| |||||||
Sbjct 1 CGAATCCATCTTTTCCCACCCAAGATCTCTCCTTCTTGTTTCCCCAGATCTGAAATTTCA 60
Query 61 AAAGCTACCC-ATTTTAACTC-AGACTCTGAGCAACACATCTGGATCCATTTCCATGGCG 118
|||||||||| |||||||||| ||||||||| |||||||||| |||||||||||||||||
Sbjct 61 AAAGCTACCCAATTTTAACTCAAGACTCTGAACAACACATCTAGATCCATTTCCATGGCG 120
Query 119 AACGCCTGGAAAAGAGACAAGAACCAGAAGCTTTTATCACCAAAGACACTAATATCActt 178
| ||||||||||| |||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 121 AGCGCCTGGAAAAAAGACAAGAACCAAAAACTTTTATCACCAAAGACACTAATCTCACTT 180
Query 179 cttgtcctctccattatcttcctctcttctctcttcttcttcttctctaactcctctctc 238
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTGTCCTTTCCATTATCTTCCTCTCTTCTCTCTTCTTCTTCTTCTCTAACTCCTCTCTC 240
Query 239 caatactctaatcccaatctctcaatcaatTCACCATTTCCAATCCCTCCCTTTGATTGC 298
|||||||| ||||| |||||||| |||||||| |||| || |||||||| |||||||||
Sbjct 241 CAATACTCCAATCCAAATCTCTCCATCAATTCCCCATACCCTATCCCTCCTTTTGATTGC 300
Query 299 TTCAAATGTCCCCAGTCAAAACCAATAATCGCAAACGTCGTCGAGAATCTCAAGTACCCT 358
||||||||||| || |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 301 TTCAAATGTCCACAATCAAAACCCATAATCGCAAACGTCGTCGAAAATCTCAAGTACCCT 360
Query 359 TTTGTTTACTCTCTCGCTGATCTCGGTAATCTCCCGGAGAAACCACACAAGAACATTGTT 418
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 TTTGTTTACTCTCTCGCTGATCTCGGTAATCTCCCGGAGAAACCACATAAGAACATTGTT 420
Query 419 AGGCTGCTTAAAGGAAAGCCCTTTAGGAAACCAGATATCTCCGCCACGATTCAGGAGGTT 478
||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 421 AGGCTACTTAAAGGTAAGCCCTTTAGGAAACCAGATATCTCCGCAACGATTCAGGAGGTA 480
Query 479 TTGGAGAGTATGAGAGCTAGTGGTAAAAATGGGATTGTTGTTGATGTTGGAGCTAATGTT 538
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTGGATAGTATGAGAGCTAGTGGTAAAAATGGGATTGTTGTTGATGTTGGAGCTAATGTT 540
Query 539 GGTATGGCTAGCTTTGCTGCTGCGGTTATGGGGTTTAAAGTTCTTGCCTTTGAGCCTGTT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGTATGGCTAGCTTTGCTGCTGCGGTTATGGGGTTTAAAGTTCTTGCCTTTGAGCCTGTT 600
Query 599 TTTGAGAATTTACAGAGGATTTGTGATGGCATTTGGTTTAATAGAGTTGCTGCTTTGGTT 658
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 601 TTTGAGAATTTACAGAGGATTTGTGATGGGATTTGGTTTAATAGAGTTGCTTCTTTGGTT 660
Query 659 ACTGTGTTTGAAGCTGCTGCTTCTGACAGAACAGGGGACATTACATTTCATAAGTTGGTT 718
|||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 661 ACTGTGTTTGAAGCTGCTGCTTCTGACAGAACAGGGGATATTACCTTCCATAAGTTGGTA 720
Query 719 GGACGGCTTGACAATAGCGCGGTTTCGGAGGTGGGAGCAAGACTTGCATTCAAGTCAAAC 778
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 721 GGACGGCTTGACAATAGCGCGGTTTCGGAGGTGGGAGCAAGGCTTGCATTCAAGTCCAAC 780
Query 779 AAAGAAATAGCAGTCCAAGTGAAATCCATACCTCTTGACAAACTAATTCCACCTTCTCAA 838
||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 781 AAAGAGATAGCAGTGCAAGTCAAATCCATACCTCTTGATAAACTAATTCCACCTTCTCAA 840
Query 839 CCTGTTCTTCTTATCAAGATCGACGTTCAAGGTTGGGAATACCACGTTTTAAAGGGTGCA 898
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CCTGTTCTTCTTATCAAGATCGACGTTCAAGGTTGGGAATACCACGTTTTAAAGGGTGCG 900
Query 899 AAGAAGTTACTTTCAAGGAAACCGGCAGAAGCTCCTTATCTAATCTATGAGGAAGATGAG 958
|||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 901 AAGAAGTTGCTTTCAGGGAAACCAGCAGAAGCTCCTTATCTAATCTATGAGGAAGATGAG 960
Query 959 AGATTACTCAAGGCAAGTAATAGTAGCTCCAAAGAGATACGTGATTTT-TTGAAAAGTGT 1017
||||| |||| |||||| ||||||||||| |||||||||||||||||| || ||||| ||
Sbjct 961 AGATTGCTCACGGCAAGCAATAGTAGCTCGAAAGAGATACGTGATTTTCTT-AAAAGCGT 1019
Query 1018 TGGATATAGCAAGTGTAGCCAGCATGGCACAGATGCACATTGCACCAAGGAGTGAAAGAC 1077
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1020 TGGATATAGTAAGTGTAGCCAGCATGGGACAGATGCACATTGCACCAAGGAGTGAAAGAC 1079
Query 1078 ACCGGACATACCGACAAATGGTAATAAGATGCCATAACAAGTTGAGGAATATAAGAAAGA 1137
| |||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1080 ATTGGACTTACCGACAAATGGTAATAAGATGCCATA-CAAGTTGAGGAATATAAGGAAGA 1138
Query 1138 TGGGCAAGAGGTATT-GCAGAGAAAAACATTTAGTTTATAAGTTGCCAAATTTGGTCAGT 1196
|| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TGAGCAATAGGTATTTGCAGAGAAAAACATTTAGTTTATAAGTTGCCAAATTTGGTCAGT 1198
Query 1197 CATGTTAGTTTCTCCTTGTAATATGTACTCAATTTTTC-GGTATATTTCTGTGATGCATA 1255
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1199 CATGTTTGTTTCTCCTTGTAATATGTACTCAATTTTTTTGGTATATTTCTGTGATGCATA 1258
Query 1256 TCAATGATCAGTTCT 1270
|||||||||||||||
Sbjct 1259 TCAATGATCAGTTCT 1273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62449477980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5