BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481544
Length=2463
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26730.1 | Symbols: | Leucine-rich repeat protein kinase fa... 3790 0.0
> AT2G26730.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr2:11388407-11391641 FORWARD LENGTH=2546
Length=2546
Score = 3790 bits (2052), Expect = 0.0
Identities = 2344/2481 (94%), Gaps = 36/2481 (1%)
Strand=Plus/Plus
Query 1 AAAGACTTCACGATCCCACACCTCCACACATATTGACTCACACACATCCctctctcttct 60
|||||||||||||||||||||||||||||| ||||||||||||||| | | |||||
Sbjct 1 AAAGACTTCACGATCCCACACCTCCACACACATTGACTCACACACA-----CACACTTCT 55
Query 61 ctctcCAAGTCCAG-AAAACCAAAAATGGGTTCTTGTCGGAAAACCACTTCTGGTTTTCA 119
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 CTCTCCAAGTTCAGAAAAACCAAAAATGGGTTCTTGTCGGAAAACCACTTCTGGTTTTCA 115
Query 120 GCAAACCCA---CTTGTAATAAAACAGACAAAACTAGAAAGAAGC--AAAAGCTTC-ttt 173
||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 116 GCAAACCCACTTCTTGTAATAAAACAGACAAAACTAGAAAGAAGCAAAAAAGCTTCGTTT 175
Query 174 tttttttCTTAGTTATCTTCTCCaaaaaaaa--CCCCCAAA-ATGGCATCAATTTCATGG 230
|||||||| | || ||| | |||||||| |||||||| ||||| ||||||||||||
Sbjct 176 TTTTTTTC-T-CTT-TCTCCAAAAAAAAAAACCCCCCCAAATATGGCGTCAATTTCATGG 232
Query 231 GTTTTGAATTCTCTACTCTCGAT-TCTGCTATTGACTCAGCGAGTCAACTCGGAGTCAAC 289
||||||||||||||| ||||||| | ||||| |||||||||||||||||||||| |||||
Sbjct 233 GTTTTGAATTCTCTATTCTCGATAT-TGCTACTGACTCAGCGAGTCAACTCGGAATCAAC 291
Query 290 CGCCGAAAAACAAGCACTCCTCACTTTCCTTCAACAAATACCTCACGAGAATCGTCTTCA 349
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 CGCAGAAAAACAAGCACTCCTCACTTTCCTTCAACAAATACCTCACGAGAATCGTCTTCA 351
Query 350 ATGGAACGAGTCAGACTCAGCTTGTAACTGGGTCGGAGTCGAATGTAACTCGAACCAATC 409
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 352 ATGGAACGAGTCAGACTCAGCTTGTAACTGGGTCGGAGTCGAATGCAACTCAAACCAATC 411
Query 410 CTCAATCCACTCTCTCCGGTTACCAGGAACCGGTTTAGTCGGTCAGATCCCATCAGGCTC 469
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TTCAATCCACTCTCTCCGGTTACCAGGAACCGGTTTAGTCGGTCAGATCCCATCAGGCTC 471
Query 470 GTTAGGTCGACTCACTGAGCTCCGAGTTCTCAGTCTTCGTTCTAATCGTCTCTCTGGTCA 529
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 CTTAGGTCGACTCACTGAGCTCCGAGTTCTCAGTCTTCGTTCTAATCGTCTCTCTGGTCA 531
Query 530 GATCCCTTCAGATTTCTCAAATCTCACTCATCTCCGAAGCTTATATCTTCAACACAACGA 589
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 532 GATCCCTTCAGATTTCTCAAATCTTACTCATCTGCGAAGCTTATATCTTCAACACAACGA 591
Query 590 ATTCTCCGGCGAGTTTCCGGCGAGTATTACTCAGTTAAACAACTTGATTCGTCTTGATAT 649
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 592 ATTCTCCGGCGAGTTTCCGACGAGTTTTACTCAGTTAAACAACTTGATTCGTCTTGATAT 651
Query 650 CTCATCTAACAACTTCACTGGTTCGATTCCTTTCTCAGTCAATAATCTCACTCACTTGAC 709
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 652 CTCATCTAACAACTTCACTGGTTCGATACCTTTCTCAGTCAATAATCTCACTCACTTGAC 711
Query 710 TGGTTTGTTTCTTGGTAACAATGGTTTCTCAGGGAATCTACCAAGTATTAGTCT-GGATT 768
|||||||||||| |||||||||||||||||||||||||| || ||||||||||| || ||
Sbjct 712 TGGTTTGTTTCTCGGTAACAATGGTTTCTCAGGGAATCTTCCTAGTATTAGTCTCGG-TT 770
Query 769 TAGTCGATTTCAATGTCTCTAACAACAATCTAAATGGTTCGATTCCGACTTCATTGTCAA 828
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||
Sbjct 771 TAGTCGATTTCAATGTCTCTAACAACAATCTAAACGGTTCGATTCCGTCTTCATTATCAA 830
Query 829 GATTCTCAGCTGAATCGTTTACCGGGAATGTAGATCTCTGTGGTGGTCCGTTAAAGCCTT 888
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 831 GATTCTCAGCTGAATCGTTTACTGGAAATGTAGATCTCTGTGGTGGTCCGTTAAAGCCTT 890
Query 889 GTAAATCGTTCTTTGTGTCTCCGTCGCCATCTCCGTCGTCGATTATTCCTGCTAAACGTT 948
|||||||||| ||||||||||| ||||| |||||||||| ||||| |||| |||| ||||
Sbjct 891 GTAAATCGTTTTTTGTGTCTCCCTCGCCGTCTCCGTCGTTGATTAATCCTTCTAATCGTT 950
Query 949 TATCTGGCAAGAACTCAAAGCTTTCGAAAGCTGCGATTGTCGCAATAATCGTCGCTAGCG 1008
|||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 951 TATCCAGCAAGAAATCAAAGCTTTCGAAAGCTGCGATTGTCGCGATAATCGTCGCTAGCG 1010
Query 1009 CGCTAGTGGCGCTTCTTTTGCTAGCTCTGCTTTTGTTCTTATGTTTAAGAAAAAGAAGAG 1068
|||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1011 CGCTCGTTGCGCTTCTTTTGCTAGCTCTGCTTTTGTTCTTGTGTTTAAGAAAAAGAAGAG 1070
Query 1069 GAAGTAAAGATGCGAGGACGAAGCAGCCGAAACCGGCGGGAGTAGCCACAAGGAATGTGG 1128
||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1071 GAAGTAATGAGGCGAGGACGAAGCAGCCGAAACCGGCGGGAGTAGCTACAAGGAATGTGG 1130
Query 1129 ATCTTCCGCCGGGAGCTTCGTCCTCGAAAGAGGAAGTAACGGGGACATCATCGGGTATGG 1188
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 ATCTTCCACCGGGTGCTTCGTCCTCGAAAGAGGAAGTAACGGGGACATCATCGGGTATGG 1190
Query 1189 GAGGTGAAACAGAGAGGAATAAACTTGTTTTCACTGAAGGAGGAGTGTATAGTTTCGATT 1248
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1191 GAGGTGAAACAGAGAGGAATAAGCTTGTTTTCACTGAAGGAGGAGTGTATAGTTTTGATT 1250
Query 1249 TGGAAGATTTGCTTAGAGCTTCAGCTGAAGTTTTAGGTAAAGGAAGTGTAGGAACTTCGT 1308
|||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||
Sbjct 1251 TGGAAGATTTGCTTAGAGCTTCTGCTGAGGTTTTAGGTAAAGGAAGTGTTGGAACATCGT 1310
Query 1309 ATAAGGCGGTGTTAGAGGAAGGTACCACGGTTGTTGTTAAGCGGCTTAAAGATGTAATGG 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 ATAAGGCGGTGTTAGAGGAAGGTACCACGGTTGTTGTTAAGCGGCTTAAAGATGTAATGG 1370
Query 1369 CGTCGAAGAAAGAGTTCGAAACACAAATGGAAGTTGTTGGTAAAATCAAACATCCAAATG 1428
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 CGTCTAAGAAAGAGTTCGAAACACAAATGGAAGTTGTTGGTAAAATCAAACATCCAAATG 1430
Query 1429 TGATTCCATTGAGAGCTTATTATTACTCTAAAGATGAGAAACTTCTCGTTTTCGATTTCA 1488
| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1431 TTATTCCATTAAGAGCTTATTACTACTCTAAAGATGAGAAACTTCTCGTTTTCGATTTCA 1490
Query 1489 TGCCTACCGGAAGCTTATCTGCTCTTCTTCACGGGAGCCGTGGATCAGGGCGAACTCCGT 1548
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1491 TGCCTACCGGAAGCTTATCTGCTCTTCTCCACGGGAGCCGTGGATCAGGGCGAACTCCGT 1550
Query 1549 TAGATTGGGATAACCGGATGAGAATAGCGATAACTGCTGCGAGAGGTTTGGCCCATCTTC 1608
|||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1551 TAGATTGGGATAACCGTATGAGAATAGCGATAACTGCAGCGAGAGGTTTGGCGCATCTTC 1610
Query 1609 ACGTTTCAGCCAAATTGGTACATGGAAACATTAAAGCTTCAAACATCCTACTACACCCAA 1668
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1611 ACGTTTCAGCCAAATTGGTACATGGAAACATTAAAGCTTCAAACATCCTCCTACACCCAA 1670
Query 1669 ACCAAGACACATGCGTCTCTGACTATGGACTGAATCAACTATTCAGTAACTCTACTCCAC 1728
|||||||||| ||||||||||| ||||||||||||||||| ||||||||||| | |||||
Sbjct 1671 ACCAAGACACTTGCGTCTCTGATTATGGACTGAATCAACTGTTCAGTAACTCGAGTCCAC 1730
Query 1729 CAAACCGTTTGGCGGGTTATCATGCTCCTGAAGTTCTCGAGACTCGGAAAGTAACTTTCA 1788
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1731 CAAACCGTTTGGCGGGTTATCATGCTCCTGAAGTTCTCGAGACACGGAAAGTAACTTTTA 1790
Query 1789 AATCGGATGTGTACAGTTTCGGGGTGTTACTGCTCGAACTATTGACAGGTAAATCGCCAA 1848
|||||||||||||||||||||||||||| || || ||||| || ||||| ||||| ||||
Sbjct 1791 AATCGGATGTGTACAGTTTCGGGGTGTTGCTTCTTGAACTGTTAACAGGAAAATCACCAA 1850
Query 1849 ACCAGGCATCTCTTGGTGAAGAAGGCATTGATCTACCCCGATGGGTACTCTCCGTGGTCC 1908
|||||||||| ||||| |||||||| ||||||||||| || ||||||||||||||||| |
Sbjct 1851 ACCAGGCATCACTTGGGGAAGAAGGTATTGATCTACCTCGGTGGGTACTCTCCGTGGTTC 1910
Query 1909 GGGAAGAATGGACTGCTGAAGTATTTGACGTTGAGCTGATGAGGTACCACAACATAGAGG 1968
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1911 GAGAAGAATGGACTGCTGAAGTATTTGACGTTGAGCTGATGAGGTACCACAACATAGAGG 1970
Query 1969 AAGAGATGGTTCAGCTTCTTCAAATCGCAATGGCTTGTGTATCAACGGTTCCTGATCAAC 2028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1971 AAGAGATGGTTCAGCTTCTTCAAATCGCAATGGCTTGTGTATCAACGGTTCCTGATCAAC 2030
Query 2029 GACCAGTAATGCAAGAAGTGTTAAGAATGATTGAAGATGTGAACAGAAGTGAGACAACCG 2088
||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct 2031 GACCAGTAATGCAAGAAGTACTAAGAATGATCGAAGATGTCAACAGAAGTGAGACAACCG 2090
Query 2089 ATGACGGGTTAAGACAATCGTCTGACGACCCGTCAAAGGGATCAGAAGGTCAGACTCCTC 2148
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2091 ATGACGGGTTAAGACAATCGTCTGATGACCCGTCAAAGGGATCAGAAGGTCAGACTCCTC 2150
Query 2149 CCGGGGAATCAAGGACACCGCCACGGTCAGTCACACCTTAGCAAATGAATGGGAAGTGAT 2208
| || ||||||||||| || ||||| |||||||||||||||||||||||||| || ||||
Sbjct 2151 CAGGAGAATCAAGGACGCCACCACGATCAGTCACACCTTAGCAAATGAATGG-AATTGAT 2209
Query 2209 TAAAAAGAAAGCAGCTTTAA-GTTTTCCTTGTTTGTGTTCAC-ttttttttt--CTCCTC 2264
||| |||||||||||||||| ||||| ||||||||||||||| ||||||||| ||||||
Sbjct 2210 TAAGAAGAAAGCAGCTTTAAAGTTTTTCTTGTTTGTGTTCACCTTTTTTTTTTTCTCCTC 2269
Query 2265 AAAAGGAGATAAAGAAAGGGATGAGATAAGTAGTGTGTGAGGTCTTTGTTAGGTGTGAAG 2324
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 2270 AAAAGGAGATAAAGAAAGGGATGAGATAAGT-GTGTG--AGGTCTTTGTTAGGTGTGAAG 2326
Query 2325 GTAAAGCAAAAAAGACTGGACCATCTCTGCATTTGGACCAATTTCTACAAGATGGCATCT 2384
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2327 GTAAAGCAAAAAAGACTGGACCATCTCTGCATTTGGACCAACTTCTACAAGATGGCATCT 2386
Query 2385 CCCATCtattttttt--cagtctttcgagatattctagtggttattattattttttcttt 2442
||||||||||||||| ||||||| |||||||||||||||||||||||| |||| ||||
Sbjct 2387 CCCATCTATTTTTTTTTCAGTCTT-CGAGATATTCTAGTGGTTATTATT-TTTT--CTTT 2442
Query 2443 tatttgtattttgtgtttaCA 2463
||||||||||| |||||||||
Sbjct 2443 TATTTGTATTTGGTGTTTACA 2463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122206673148
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5