BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481549
Length=1705
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26770.1 | Symbols: | plectin-related | chr2:11404066-11408... 2647 0.0
> AT2G26770.1 | Symbols: | plectin-related | chr2:11404066-11408326
REVERSE LENGTH=1842
Length=1842
Score = 2647 bits (1433), Expect = 0.0
Identities = 1627/1719 (95%), Gaps = 20/1719 (1%)
Strand=Plus/Plus
Query 1 TTTTGTGAAGATTCAAGAACAGATCTATAAAATGACAAGGGTTACACGCGATTTCCGGGA 60
|||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||
Sbjct 130 TTTTGTGAAGATTCAACAACAGATCTATACAATGACAAGGGTTACACGCGATTTTCGGGA 189
Query 61 TTCATTGCAGAGAGATGGTGTTCCTGCAGTATCAGCAGATGTGAAATTTGCTTCAAGTAG 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 TTCATTACAGAGAGATGGTGTTCCTGCAGTATCAGCAGATGTGAAATTTGCTTCAAGTAG 249
Query 121 ATTTCCTAATTATAGAATTGGAGCTAATGATCAGATATTTGATGTTAAAGATGACCCTAA 180
||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 250 ATTTCCTAATTATAGAATTGGAGCTAATGATCAAATATTTGATGTTAAAGACGATCCTAA 309
Query 181 AGTGATGTCGATGAAAGAGGTTGTTGCGCGTGAGACAGCACAGCTTATGGACCAGCAAAA 240
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 310 AGTGATGTCCATGAAAGAGGTTGTTGCGCGTGAGACAGCGCAGCTTATGGACCAGCAGAA 369
Query 241 ACGTTTGTCTGTTCGTGACCTCGCTAATAAATTTGAGAAGGGATTGGCTGCAGCTGCTAA 300
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 370 ACGTTTGTCTGTTCGTGACCTCGCTCATAAATTTGAGAAGGGTTTGGCTGCAGCTGCTAA 429
Query 301 GCTATCTGAGGAGGCAAAACTTAAAGAAGCAACTTCCTTGGAGAAACATGTTCTTTTAAA 360
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 430 GCTATCTGAGGAGGCAAAACTCAAAGAAGCAACTTCGTTGGAGAAACATGTTCTTTTAAA 489
Query 361 GAAACTTCGAGATGCATTGGAGTCTCTAAGAGGACGTGTGGCCGGTAGAAACAAGGATGA 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 490 GAAACTTCGAGATGCATTGGAGTCTCTAAGAGGACGTGTGGCAGGTAGAAACAAGGATGA 549
Query 421 TGTAGAGGAAGCCATTGCCATGGTTGAAGCTCTGGCTGTTCAGTTGACTCAGCGAGAAGG 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 550 TGTAGAGGAAGCCATTGCCATGGTTGAAGCTCTAGCTGTTCAGTTGACTCAGCGAGAAGG 609
Query 481 AGAGCTGTTCATAGAAAAAGCGGAAGTGAAGAAGCTAGCGTCTTTCTTAAAGCAGGCCTC 540
|||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 610 AGAGCTATTCATAGAAAAAGCGGAAGTGAAAAAGCTAGCGTCTTTTTTAAAGCAGGCCTC 669
Query 541 AGAGGATGCTAAGAAACTTGTCGACGAGGAGAGAGCTTTTGCACGTGCTGAGATTGAAAG 600
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 670 AGAGGATGCTAAGAAACTTGTCGACGAGGAAAGAGCGTTTGCACGTGCTGAGATTGAAAG 729
Query 601 TGCCAGAGCAGCTGTACAAAGAGTGGAAGAAGCCCTGCGAGAACATGAACAGATGTCTCG 660
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 730 TGCAAGAGCAGCTGTACAAAGAGTTGAAGAAGCCCTGCGAGAACATGAACAGATGTCTCG 789
Query 661 GGCCTCTGGGAAACAGGACATGGAAGA-CTTAATGAAGGAAGTTCAAGAAGCTAGGCGGA 719
|||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 790 TGCCTCTGGGAAACAAGACATGGAAGATCT-AATGAAGGAAGTTCAAGAAGCTAGGCGGA 848
Query 720 TTAAAATGCTGCATCAGCCAAGCAGGGTCATGGACATGGAATATGAGCTTCGAGCACTGA 779
|||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 849 TTAAAATGCTGCATCAACCAAGCAGGGTAATGGATATGGAATATGAGCTTCGAGCACTAA 908
Query 780 GGAATCAGCTTGCAGAGAAATCTAAACATTTTCTTCAGCTACAAAAGAAGCTCGCAATGT 839
| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 909 GAAATCAGCTTGCAGAGAAATCAAAACATTTTCTTCAACTACAAAAGAAGCTCGCAATGT 968
Query 840 GCAGAAAGAGCGAGGAAAATATATCCCTTATATATGAAATAGATGGCACTGAAGCTCTAG 899
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 969 GCAGAAAGAGCGAGGAAAATATATCCCTTGTATATGAAATAGATGGCACTGAAGCTCTAG 1028
Query 900 GTTCTTGTTTGCGAGTTAGACCTTGCGCCAATGATGCTCCTGATCTTTCCAAGTGTACGA 959
| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1029 GATCTTGTTTGCGAGTTAGACCTTGCTCCAATGATGCACCTGATCTTTCCAAGTGTACGA 1088
Query 960 TACAATGGTACCGTTCATCTTCTGATGGCAGCAA-AAGGGAGCTTATATCAGGTGCCACA 1018
|||||||||||||||||||||| |||||| ||| |||| ||||||||||||||||||||
Sbjct 1089 TACAATGGTACCGTTCATCTTCAGATGGCTCCAAGAAGG-AGCTTATATCAGGTGCCACA 1147
Query 1019 AAATCAGTTTACGCTCCCGAGCCTTTTGATGTTGGACGAGTCTTACACGCAGATATCA-C 1077
||||||||||||||||||||||||||||| |||||||||||||| || |||||||||| |
Sbjct 1148 AAATCAGTTTACGCTCCCGAGCCTTTTGACGTTGGACGAGTCTTGCATGCAGATATCATC 1207
Query 1078 TTACGATGGCCGTTTGCTTTCATTATCCACTGTTGGAAAGATTGATCCAGCTGCTGGATT 1137
| ||||||||| || |||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 1208 T-ACGATGGCCATTCGCTTTCGTTATCCACAGTGGGAAAGATTGATCCAGCTGCTGGATT 1266
Query 1138 GGGTAGCTACGTGGAGGCATTAGTACGGAAACACGATGTTGATTTCAATGTAGTTGTGAC 1197
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 GGGTAGCTATGTCGAGGCATTAGTACGGAAACACGATGTTGATTTCAATGTAGTTGTGAC 1326
Query 1198 CCAAATGAGTGGGGAAGACCATACATCAGAATCTATCCACCTGTTTCACGTTGGTAAAAT 1257
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1327 CCAAATGAGTGGGGAAGACCATACATCAGAATCTATCCACTTGTTTCATGTTGGTAAAAT 1386
Query 1258 GAGGATAAAGCTTTGCAAGGGAAAGACAGTCATTGCGAAAGAGTACTACTCCAGTGCGAT 1317
||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||| ||
Sbjct 1387 GAGGATAAAACTTTGCAAGGGAAAGACAGTGATTGCAAAAGAGTACTACTCTAGTGCAAT 1446
Query 1318 GCAGCTATGTGGAGTGAGAGGAGGTGGAAATGCTGCAGCTCAGGCATTGTATTGGCAGGC 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 GCAGCTATGTGGAGTGAGAGGAGGTGGAAATGCTGCAGCTCAGGCATTGTATTGGCAGGC 1506
Query 1378 GAAGAAAGGTGTATCCTTTGTGATAGCTTTTGAGTCTGAGAGAGAAAGAAACGCTGCGAT 1437
||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1507 GAAGAAAGGAGTGTCATTTGTGATAGCTTTTGAGTCTGAGAGAGAAAGAAACGCTGCGAT 1566
Query 1438 CATGCTTGCACGAAGATTCGCTTGTGATTGTAATGTGACGCTTGCTGGTCCAGACGACAG 1497
|||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 1567 CATGCTTGCACGAAGATTTGCTTGTGATTGTAATGTGACACTTGCTGGTCCAGAAGACAG 1626
Query 1498 AACAGAGACGGGTCAAAGCCCTTGAAGAATGGCTCTTAACTAAGTTGTGATTTT-AGTAT 1556
||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||
Sbjct 1627 AACAGAGACGGGTCAAAGCCCTTGAAGAACGGCTCTTACCTAAGTTGTGATTTTTAGTAT 1686
Query 1557 CCGTAAGAGCttttttttttt-t-GTTT-TGTAG-TTTATAT--ATT-GTTTGAATTGTA 1609
|||||||||||| ||| |||| | |||| | ||| ||| || ||| ||||||||||||
Sbjct 1687 CCGTAAGAGCTTATTTGTTTTGTAGTTTATATAGGTTT-TAGGCATTTGTTTGAATTGTA 1745
Query 1610 CTTCTGTTTGTGTGTAAAAATATGGAATCAGTG---TAAGAGGTGATGGTGAATCTATAT 1666
||| | || |||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 1746 CTTGTATT-GTGTGTAAAAATATCGAG-CAGTGAAGTAAGAGGTGATGGTGAATCTATAT 1803
Query 1667 GTAACGGGTGGCTTGTGTTTATTCATTTGTTTTGATCTT 1705
|||||||||||||||||||||||||||||||||||||||
Sbjct 1804 GTAACGGGTGGCTTGTGTTTATTCATTTGTTTTGATCTT 1842
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84286715055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5