BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481553
Length=1575
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26800.2 | Symbols: | Aldolase superfamily protein | chr2:1... 2374 0.0
> AT2G26800.2 | Symbols: | Aldolase superfamily protein | chr2:11429022-11432732
REVERSE LENGTH=1765
Length=1765
Score = 2374 bits (1285), Expect = 0.0
Identities = 1493/1590 (94%), Gaps = 28/1590 (2%)
Strand=Plus/Plus
Query 1 CCTCCCAACCAGAATTAGAGGAGATAAACTTGACGCGTCCCTTCTTCATTCTGCGTCTTC 60
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 27 CCTCCCAACCAGAATTAGTGGAGATAAACTTGACGCGTCCCTTCTTCATTCTCCGTCTTC 86
Query 61 TTTACGTCATCGG--AAA--ACGAATCTTATTGCCTGAGATTCTTCATCGGAGGAATT-A 115
|| |||||| ||| ||| |||||||| |||||||||||||||||||| |||||| |
Sbjct 87 TTCACGTCACCGGAAAAACGACGAATCTCATTGCCTGAGATTCTTCATC---GGAATTAA 143
Query 116 A--TCC----CACTT-TTCACGGTAAAACTCAAACTATTGCTGAAAAATGCAATGGAATG 168
| ||| | || |||| | | ||||||||||||||||||||||||||||||||||
Sbjct 144 ACCTCCGGAGGAATTAATCAC-G-AGAACTCAAACTATTGCTGAAAAATGCAATGGAATG 201
Query 169 GGGCAAGAAGAGCCTATTCTTTATGGTGCAAGAGATTAACACACAACACTCATTTGCATC 228
||| ||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 202 GGGTGAGACGAGCCCATTCTATATGGTGCAAGAGATTAACAAACAACACTCATTTGCATC 261
Query 229 ATCCTTCTATTCCAGTCTCACATTTGTTCACCATGTCGAGTTTGGAGGAGCCACTAAGCT 288
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 262 ATCCTTCTATTCCAGTCTCACATTTTTTCACCATGTCGAGTTTGGAGGAGCCGCTAAGCT 321
Query 289 TTGACAAGTTGCCAAGTATGAGCACTATGGATAGGATTCAGAGATTTTCGTCTGGTGCTT 348
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 322 TTGACAAGTTGCCAAGTATGAGCACTATGGATAGGATTCAGAGATTTTCTTCCGGTGCTT 381
Query 349 GTAGGCCGAGAGATGATGTCGGTATGGGACACCGTTGGATTGAGGGAAGAGATTGCACCA 408
|| | || || |||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 382 GTCGCCCCAGGGATGATGTCGGTATGGGACACCGTTGGATTGAAGGAAGAGATTGCACTA 441
Query 409 CCTCTAATAGTTGCATTGATGATGAGAAAAGCTTTGGTAAAGAGTCCTTTCCGTGGAGAA 468
||||||| ||||||||||||||||| |||||||||| ||||||||| || ||||||||||
Sbjct 442 CCTCTAACAGTTGCATTGATGATGATAAAAGCTTTGCTAAAGAGTCATTCCCGTGGAGAA 501
Query 469 AGCATACTCGAAAACTATCTGAAGGAGAACAACATCTGTTTCGGAATATTTCAATTT-CA 527
||||||||| ||| |||||||||||| | ||| ||||| |||||||||| ||| |
Sbjct 502 GGCATACTCGGAAATTATCTGAAGGAG---AGCATATGTTTAGGAATATTTC-GTTTGCT 557
Query 528 GGAAGGACTTCCACAGTTTCTGGGACTTTAAGGGAATCCAAAAGTTTCAAGGAGCATAAG 587
||||||||||| || |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 558 GGAAGGACTTCTACTGTTTCTGGGACTTTAAGGGAATCCAAAAGTTTTAAGGAGCAGAAG 617
Query 588 TATAGCACATGTAGCAATGAGAATGGCAAAAT-GCA-ATCAAGTAATAAGATCTCTAAAG 645
|||||||||| |||||||||||||||| | | ||| || ||||||||||||||||||||
Sbjct 618 TATAGCACATTTAGCAATGAGAATGGC-ACGTCGCATAT-AAGTAATAAGATCTCTAAAG 675
Query 646 GTATACCAAAGTTTGTGAAGATTGTAGAAGTTGGTCCAAGGGATGGCCTGCAGAATGAGA 705
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 676 GTATACCAAAGTTTGTGAAGATTGTAGAAGTTGGTCCAAGAGATGGCCTGCAGAATGAGA 735
Query 706 AAAATATAGTACCTACATCTGTAAAGGTGGAACTAATTCAGAGATTAGTTTCTTCTGGAT 765
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 AAAATATAGTACCCACATCTGTAAAGGTGGAACTAATTCAGAGATTAGTTTCTTCTGGAT 795
Query 766 TGCCTGTTGTCGAGGCTACAAGTTTTGTATCACCAAAATGGGTTCCTCAGCTTGCAGATG 825
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 796 TGCCTGTTGTCGAGGCTACAAGTTTTGTATCACCAAAGTGGGTTCCCCAGCTTGCAGATG 855
Query 826 CAAAGGATGTAATGGATGCAGTAAATACTTTAGATGGGGCTCGATTGCCCGTTCTGACAC 885
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 856 CAAAGGATGTAATGGATGCAGTAAATACTTTAGATGGGGCTCGATTACCGGTTCTGACAC 915
Query 886 CGAATCTAAAAGGCTTTGAAGCAGCTGTCTCTGCAGGTGCTAAGGAAGTTGCAATCTTTG 945
||||||||||||||||| |||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 916 CGAATCTAAAAGGCTTTCAAGCGGCTGTATCTGCAGGTGCAAAGGAAGTTGCAATCTTTG 975
Query 946 CATCGGCTTCTGAGTCATTCTCCTTGTCAAATATTAACTGTACCATCGAAGAGAGTCTCT 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 CATCGGCTTCTGAGTCATTCTCCTTGTCAAATATTAACTGTACCATCGAAGAGAGTCTCT 1035
Query 1006 TGAGATATCGTGCTGTTGCCACTGCCGCAAAGGAGCATTCGGTTCCAGTCCGTGGGTATG 1065
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1036 TGAGATATCGTGTTGTTGCCACTGCTGCAAAGGAGCATTCGGTTCCAGTCCGTGGGTATG 1095
Query 1066 TATCTTGCGTTGTGGGGTGTCCAGTAGAGGGAGCC-GTTCCACCCTCAAAAGTGGCTTAT 1124
|||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||
Sbjct 1096 TATCTTGCGTTGTGGGGTGTCCAGTAGAGGGA-CCTGTTCTACCCTCAAAAGTGGCTTAT 1154
Query 1125 GTTGTGAAAGAACTCTATGATATGGGCTGCTTTGAGATTTCTCTGGGTGATACAATTGGA 1184
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1155 GTTGTGAAAGAACTCTATGACATGGGCTGCTTTGAGATTTCTCTGGGTGATACAATTGGA 1214
Query 1185 ATCGGCACTCCTGGTTCTGTGGTTCCAATGCTTGAAGCCGTGATGGCAGTTGTGCCAGCC 1244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1215 ATCGGCACTCCTGGTTCTGTGGTTCCAATGCTTGAAGCCGTGATGGCAGTTGTGCCAGCG 1274
Query 1245 GACAAGCTGGCTGTTCACTTCCATGACACATATGGGCAAGCTCTTGCAAATATATTGGTG 1304
|||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct 1275 GACAAGCTGGCTGTTCACTTCCATGATACCTATGGGCAAGCTCTTGCAAACATATTGGTG 1334
Query 1305 TCTCTCCAAATGGGAATAAGCATAGTAGACTCATCAATTGCTGGATTAGGCGGCTGCCCA 1364
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1335 TCTCTCCAGATGGGAATAAGCATAGTAGACTCATCAATTGCCGGATTAGGCGGCTGCCCA 1394
Query 1365 TATGCAAAAGGAGCTTCAGGAAATGTAGCCACAGAAGATGTGGTTTACATGTTGAACGGT 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 TATGCAAAAGGAGCTTCAGGAAATGTAGCCACAGAAGATGTGGTTTACATGTTGAACGGT 1454
Query 1425 TTAGGCGTCCAGACCAATGTCGACTTGGGAAAGCTTATAGCTGCTGGAGATTTCATCAGC 1484
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1455 TTAGGCGTCCACACCAATGTCGACTTGGGAAAGCTTATAGCTGCTGGAGATTTCATCAGC 1514
Query 1485 AAGCATCTCGGCCGTCCCAATGGTTCAAAGGCTGCCGTTGCCCTCAACCGTCGGATCACA 1544
||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1515 AAGCATCTCGGTCGTCCCAATGGTTCGAAGGCTGCCGTTGCCCTCAACCGTCGTATCACA 1574
Query 1545 GCTGATGCCTCCAAGATATGAGTTTTATTA 1574
||||||||||||||||||||||||||||||
Sbjct 1575 GCTGATGCCTCCAAGATATGAGTTTTATTA 1604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77760644205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5