BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481568
Length=1249
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26930.1 | Symbols: ATCDPMEK, PDE277, ISPE, CDPMEK | 4-(cyti... 1905 0.0
> AT2G26930.1 | Symbols: ATCDPMEK, PDE277, ISPE, CDPMEK | 4-(cytidine
5'-phospho)-2-C-methyl-D-erithritol kinase | chr2:11491707-11494266
REVERSE LENGTH=1311
Length=1311
Score = 1905 bits (1031), Expect = 0.0
Identities = 1159/1221 (95%), Gaps = 7/1221 (1%)
Strand=Plus/Plus
Query 1 AAAAATCAGGTAGGAAG--A-AACAACAATGGCAACGGCTTCTCCTCCATTTAtctcaac 57
|||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 10 AAAAATAAGGTAGGAAGAAACAACAACAATGGCAACGGCTTCTCCTCCATTTATCTCAAC 69
Query 58 tctcaacttcactcactcttctttcaaaaatacttcttcttcttcattttctccgaagct 117
||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 70 TCTCAGCTTCACTCACTCTTCTTTCAAAACTTCTTCTTCTTCTTCATTTTCTCCGAAGCT 129
Query 118 tcttcGACCCCTTTTGAGCTTTTCCGTCAAAGCTTCCAGAAAGCAAGTAGAGATAGTGTT 177
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 TCTTCGACCCCTCTTAAGCTTTTCCGTCAAAGCTTCCAGAAAGCAAGTAGAGATAGTGTT 189
Query 178 TGATCCTGATGAGAGGCTTAATAAGATTGGTGATGATGTTGACAAAGAAGCTCCTTTGTC 237
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 190 TGATCCTGATGAGAGGCTTAATAAGATAGGTGATGATGTTGACAAAGAAGCTCCTTTGTC 249
Query 238 TAGGCTTAAGCTCTTCTCACCTTGCAAGATCAATGTTTTCTTGAGGATAACCGGAAAGCG 297
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 250 CAGGCTTAAGCTCTTCTCACCTTGCAAGATCAATGTTTTCTTGAGGATCACCGGAAAGCG 309
Query 298 AGAAGATGGGTTTCATGATTTAGCCTCATTGTTTCATGTGATTAGCTTAGGAGATACTAT 357
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 310 AGAAGATGGGTTTCATGATTTAGCCTCTTTGTTTCATGTGATTAGCTTAGGAGACACTAT 369
Query 358 TAAATTCTCATTGTCGCCATCAAAATCCAAAGATCGTCTT-TCTACTAACGTTCAAGGAG 416
||||||||||||||| |||||||| || ||||||||| || |||||||||||||||||||
Sbjct 370 TAAATTCTCATTGTCACCATCAAAGTCTAAAGATCGT-TTGTCTACTAACGTTCAAGGAG 428
Query 417 TCCCTGTTGATGGCAGAAATCTGATTATAAAAGCACTTAACCTTTACAGGAAGAAAACTG 476
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 TCCCTGTTGATGGGAGAAATCTGATTATAAAAGCACTTAACCTTTACAGGAAGAAAACTG 488
Query 477 GTAGTGACAGATTCTTCTGGATTCATTTAGACAAGAAGGTGCCTACCGGGGCTGGACTCG 536
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 489 GTAGTAACAGATTCTTCTGGATTCATTTAGATAAGAAGGTGCCTACCGGGGCTGGACTCG 548
Query 537 GTGGTGGAAGTAGTAATGCTGCAACTGCACTTTGGGCGGCAAATCAGCTCAATGGAGGTC 596
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 549 GTGGTGGAAGTAGTAATGCTGCAACTGCACTCTGGGCGGCAAATGAGCTCAATGGAGGTC 608
Query 597 TTGTCACTGAGAAGGAACTCCAGGATTGGTCAAGTGAAATTGGGTCAGATATTCCTTTCT 656
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 TTGTCACTGAGAACGAACTCCAGGATTGGTCAAGTGAAATTGGGTCAGATATTCCTTTCT 668
Query 657 TCTTTTCACATGGAGCTGCCTATTGTACCGGGAGAGGTGAGATTGTCCAAGACCTTCTTC 716
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 669 TCTTCTCGCATGGAGCTGCCTATTGTACCGGGAGAGGTGAGATTGTCCAAGACCTTCCTC 728
Query 717 CTCCTTTTCCTCTCGATCTTCCGATGGTACTCATAAAGCCCCGAGAAGCATGTTCCACTG 776
| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 729 CACCTTTTCCTCTTGATCTTCCGATGGTGCTCATAAAGCCCCGAGAAGCATGTTCCACTG 788
Query 777 CTGAAGTTTACAAACGTCTTAGTCTAGATCAGACGAGTAACATTAATCCCTTGACATTAC 836
|||||||||||||||||||| || ||||||||||||| || |||||||||||||||||||
Sbjct 789 CTGAAGTTTACAAACGTCTTCGTTTAGATCAGACGAGCAATATTAATCCCTTGACATTAC 848
Query 837 TAGAGAATGTGACCAACAGTGGTGTATCTCAAAGCATTTGCGTAAACGATTTGGAACCGC 896
||||||||||||||| || |||||| ||||||||||| ||||||||||||||||||||||
Sbjct 849 TAGAGAATGTGACCAGCAATGGTGTGTCTCAAAGCATATGCGTAAACGATTTGGAACCGC 908
Query 897 CAGCGTTTTCAGTTCTCCCGTCTCTAAAACGCTTGAAGCAACGAATAATAGCATCTGGGC 956
|||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| |
Sbjct 909 CAGCGTTTTCAGTTCTTCCATCTCTAAAACGCTTGAAGCAACGGATAATAGCATCTGGAC 968
Query 957 GCGGGGAATATGATGCCGTATTTATGTCTGGGAGTGGAAGCACAATTGTCGGTATCGGTT 1016
| |||||||| ||||| || ||||||||||||||||||||||| ||| ||||||| ||||
Sbjct 969 GTGGGGAATACGATGCTGTGTTTATGTCTGGGAGTGGAAGCACTATTATCGGTATTGGTT 1028
Query 1017 CACCAGATCCTCCGCAATTTATATACGATGATGAAGAATACAAGAACGTGTTCTTGTCTG 1076
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1029 CACCAGATCCTCCTCAATTTATATATGATGATGAAGAATACAAGAACGTGTTCTTGTCTG 1088
Query 1077 AAGCCAACTTTATGACTCGGGAGGCTAATGAATGGTACAAAGAACCTGCTTCTGCAAATG 1136
|||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 AAGCAAACTTTATGACGCGTGAGGCTAATGAATGGTACAAAGAACCTGCTTCTGCAAATG 1148
Query 1137 CTACTACCTCATCCTCTGAATCTCGCATGGATTTCCAATGAGATGTGACAAAGATGTAAT 1196
|||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1149 CTACTACCTCATCCGCCGAATCTCGCATGGATTTCCAATGAGATGTTACAAACATGTAAT 1208
Query 1197 TTTTAGA--GGATTGATTTGA 1215
|||| || ||||||||||||
Sbjct 1209 TTTTTGAAAGGATTGATTTGA 1229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61395266535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5