BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481569
Length=873
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26940.1 | Symbols: | C2H2-type zinc finger family protein ... 1083 0.0
> AT2G26940.1 | Symbols: | C2H2-type zinc finger family protein
| chr2:11496518-11497378 REVERSE LENGTH=861
Length=861
Score = 1083 bits (586), Expect = 0.0
Identities = 790/880 (90%), Gaps = 47/880 (5%)
Strand=Plus/Plus
Query 1 ATGAAGAGAACAAGAGACCTTTATGATGATGATGATTCTTCTTCTTCATCGGAATCTGAA 60
||||||||||||||||||||||||| | |||||| |||||||||||||||||||||
Sbjct 1 ATGAAGAGAACAAGAGACCTTTATG--G-TGATGA---ATCTTCTTCATCGGAATCTGAA 54
Query 61 GAGTTTCACC-GGACAAAACTCCGGGTTAAGGTGAAGTTACCGGAAGAAAGAAGTGAAGA 119
|||||||||| ||| |||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 55 GAGTTTCACCGGGA-AAAAATCCGGGTGAAGGTGAAGTTACCGGAAGAAAGAAGTGAAGA 113
Query 120 TGAAGATGAGTCTCCTCAGCCGCTGAGGAAGCACTTTTGTGTGATTTGTGAGAAGCAGTT 179
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 114 TGAAGATGAGTCTCCTCAGCCTCAGAGGAAGCACTTTTGTGTGATTTGTGAGAAGCAGTT 173
Query 180 TAGCTCTGGTAAGGCTTATGGTGGTCACGTGAGGATCCACTCCACCGAGTACAATATCAa 239
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 174 TAGCTCTGGTAAGGCTTATGGTGGTCACGTGAGGATCCACTCCATTGAGTACAATAACAA 233
Query 240 aggaaagatgaagaagacga-g--gatgaagatcatgaagaagaaga-ga-aa-gattgg 293
|||||||||||||||| || | ||||||| | | ||||||||||| || || ||||||
Sbjct 234 GGGAAAGATGAAGAAGATGAAGAAGATGAAGTTGAAGAAGAAGAAGAAGAGAAAGATTGG 293
Query 294 tttgttgaagaaagagaaggagaaagagatagatCTGATTAGGGCTGACGTGGAAGGTAA 353
|||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 294 TTTGGTGAAGAAAGAGAAGGAGAAAGAGATAGATCTGGCTAGGACTGACGTGGAAGGTAA 353
Query 354 GATTAGGTGTTGTCTTTGTGGAAAAGAGTTTCAAACAATGCACTCTTTGTTTGGACATAT 413
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 354 GATTAGGTGTTGTCTTTGTGGAAAAGAGTTTCAAACAATGCACTCTTTGTTTGGTCATAT 413
Query 414 GAGGAGACATCCTGACCGGAGTTGGAAAGGGATACGACCTCCTCCTCCACCGGAGAAGTT 473
|||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||
Sbjct 414 GAGGAGACATCCTGACCGGACTTGGAAAGGGATACGACCTCCTCCACCATCGGAGAAGTT 473
Query 474 CAATCTAAGCTACGGtg-atgatgatgat-gttgatgatgatgaggatga-g--gatgcg 528
||||||||||||| || ||||||||| | | |||||| ||||||||||| | |||| |
Sbjct 474 CAATCTAAGCTACT-TGGATGATGATG-TCGATGATGAAGATGAGGATGATGATGATGTG 531
Query 529 atgagtagatccatcatgatgagtgatgatgtacccgaggatgTTCAAGAAGCTGCTTGC 588
|||||||||||||| ||||||||||||| | ||||||||||||||| | ||||||||||
Sbjct 532 ATGAGTAGATCCATGATGATGAGTGATG-T--ACCCGAGGATGTTCAGGGAGCTGCTTGC 588
Query 589 ATTCTAATGATGCTCTCTTACGCTTCAAGCAATTATTGGGCTGGGATAAAGAAAGCTATG 648
||||||||||||||||||||||||||||| ||||| |||||||||||| || | |
Sbjct 589 ATTCTAATGATGCTCTCTTACGCTTCAAGAAATTACTGGGCTGGGATA--GA--G----G 640
Query 649 GAATCACCCAAATCCGAGGTAAGAAGTCCGAGTTGCTACAAAGATGACAAAGGAAAAGAT 708
||||||| |||||||||||||||||| |||||| |||||||||||| |||||||||||
Sbjct 641 -AATCACCAAAATCCGAGGTAAGAAGTTCGAGTTTCTACAAAGATGATGAAGGAAAAGAT 699
Query 709 GAAGTTTTAGGTGATGGT-GGAATGGATGATAAGAAGAGTTTAATTGTAGATATGAA--T 765
|||| ||||| ||| || ||| ||||||| |||||| |||| |||||||||||||| |
Sbjct 700 AAAGTATTAGGAGATAGTAGGA-TGGATGAAAAGAAGGGTTTGATTGTAGATATGAAGAT 758
Query 766 A----T--AAA-G-A--TGAAGGTGAATAGTCCTCGAGATGAAGATAAGAGGTCATTAGG 815
| | ||| | | ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 759 AAAGATGGAAATGGAAGTGAAGGTGAATAGTCCTCGAGATGAAGCTAAGAGGTCATTAGG 818
Query 816 GTTTGATCTCAATCAGCCTCCTTACCATGAAGATCATCCT 855
||||||||||||||||||||||||||||||||||||||||
Sbjct 819 GTTTGATCTCAATCAGCCTCCTTACCATGAAGATCATCCT 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42598556656
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5