BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481571
Length=714
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26970.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 1055 0.0
> AT2G26970.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr2:11509721-11511914 REVERSE
LENGTH=867
Length=867
Score = 1055 bits (571), Expect = 0.0
Identities = 670/717 (93%), Gaps = 9/717 (1%)
Strand=Plus/Plus
Query 1 AAAAGAATGAACAAACTCTCCAACGCTTTCTCTCTCCTAGCTTTCGCCGATGAAGATGCT 60
|||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 6 AAAAAAATGAACAAACTCTCCAACGCTTTCTCTGTCCTGGCTTTCGCCGATGAAGATGCT 65
Query 61 CCAATGGCTTCTTCTTCTTCTTCCACTGAGAAACAAGAAGAAAGAGTAAATGGGTCACTT 120
||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 66 CCAATGG---CTTCTTCTTCTTCCACTGGGAAACAAGAAGAAAGTGTAAATGGGTCACTT 122
Query 121 GAGGATGGAGATTACAAGCAACCACTTGTTTGGATTGACTTGGAAATGACTGG-TCTAAA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 123 GAGGATGGAGATTACAAGCAACCACTTGTTTGGATTGACTTGGAAATGACTGGAT-TAAA 181
Query 180 TGTTGAAGTTGACAGGATATTGGAGATTGCTTGTATAATTACTGATGGAAATTTAAC-CA 238
|||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| ||
Sbjct 182 TGTTGAAGTTGACAGGATATTGGAGATTGCATGTATAATTACTAATGGAGATTTAACACA 241
Query 239 AATCAGTGGAGGGTCCAGATTTGGTTGTACACCAAACTAAAGACTGTTTGGATAAAATGG 298
| |||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||
Sbjct 242 A-TCAGTGGAGGGTCCAGATTTAGTTGTACGTCAAACGAAAGACTGTTTGGATAAAATGG 300
Query 299 GTGAATGGTGTCAAACTCATCATGGAGATAGTGGGTTGACGAAGAAAGTGCTCCTTAGTA 358
||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 301 ATGACTGGTGTCAAACTCATCATGGAGCTAGTGGGTTGACGAAGAAAGTGCTCCTCAGTG 360
Query 359 CGATAAGTGAAAGGGAAGCTGAGCAAAAGGTCATTGAATTCGTAAAGAAGCATGTTGGTT 418
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 CGATAACTGAAAGGGAAGCTGAGCAAAAGGTCATCGAATTCGTAAAGAAGCATGTTGGTT 420
Query 419 CTGAAAATCCACT-TCTAGCTGGAAACTCAGTCTATGTTGATTTCCTTTTCTTAAAGAAG 477
| | ||||||||| | |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 421 CCGGAAATCCACTGT-TAGCTGGAAACTCAGTCTATGTCGATTTCCTTTTCTTAAAGAAA 479
Query 478 TACATGCCAGAATTAGCTGCCCTTTTCCCTCATATACTTGTCGACGTCAGTAGCGTCAAG 537
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 480 TACATGCCAGAATTAGCTGCCCTTTTCCCTCATATACTCGTCGATGTCAGTAGCGTCAAG 539
Query 538 GCTCTATGCTCCCGATGGTTCCCCATAGAGAAAAGGAGAGCTCCTGCAAAGAAAAACAAC 597
||| ||||| ||||||||||||||||||||| ||||| ||||||||| |||||||||||
Sbjct 540 GCTTTATGCGCCCGATGGTTCCCCATAGAGAGAAGGAAAGCTCCTGCCAAGAAAAACAAT 599
Query 598 CACAGAGCCATGGATGATATAAGAGAAAGCATAAAGGAACTTAAGTACTACAAGAAAACA 657
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 600 CACAGAGCCATGGATGATATAAGAGAAAGTATAAAGGAGCTTAAGTACTACAAGAAAACA 659
Query 658 ATATTCAAAGCAAGGAGATGAGTGGAGTTAGGTCCTGCAATATGCTTGCTTATTAGT 714
||||||||||| ||||||||||||||||| ||| ||||||||||||| |||| ||||
Sbjct 660 ATATTCAAAGCTAGGAGATGAGTGGAGTTGGGTACTGCAATATGCTTACTTACTAGT 716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34611327283
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5